IslandPath Analysis: Borrelia burgdorferi B31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 28.42   STD DEV: 3.85
Borrelia burgdorferi B31, complete genome - 1..910724
851 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
541	 31.05	0	552007..552225	+	72	15594886	-	BB0541	-	hypothetical protein
542	 24.18	-1	552440..553018	+	192	15594887	-	BB0542	-	hypothetical protein
543	 31.81	0	553133..553789	+	218	15594888	-	BB0543	-	hypothetical protein
544	 30.47	0	553992..555212	+	406	15594889	-	BB0544	-	phosphoribosylpyrophosphate synthetase
545	 27.99	0	555216..556580	+	454	15594890	-	BB0545	-	xylulokinase (xylB)
546	 28.11	0	556563..557423	-	286	15594891	-	BB0546	-	hypothetical protein
547	 23.79	-1	557407..558024	-	205	15594892	coaE	BB0547	-	dephospho-CoA kinase
548	 28.09	0	558006..560732	-	908	15594893	-	BB0548	-	DNA polymerase I (polA)
549	 20.05	-2	560729..561127	-	132	15594894	-	BB0549	-	hypothetical protein
550	 26.71	0	561117..561554	-	145	15594895	-	BB0550	-	flagellar protein (flaJ)
551	 27.36	0	561563..561964	-	133	15594896	-	BB0551	-	chemotaxis response regulator (cheY-1)
552	 28.85	0	562185..564167	+	660	15594897	-	BB0552	-	DNA ligase (lig)
553	 23.49	-1	564188..565681	-	497	15594898	-	BB0553	-	hypothetical protein
554	 25.78	0	565943..567823	+	626	15594899	-	BB0554	-	hypothetical protein
555	 25.64	0	567810..568277	+	155	15594900	-	BB0555	-	hypothetical protein
556	 22.76	-1	568270..569139	+	289	15594901	-	BB0556	-	hypothetical protein
557	 36.40	+2	569278..569538	+	86	15594902	-	BB0557	-	phosphocarrier protein HPr (ptsH-2)
558	 32.93	+1	569559..571280	+	573	15594903	-	BB0558	-	phosphoenolpyruvate-protein phosphatase (ptsI)
559	 33.16	+1	571283..571852	+	189	15594904	-	BB0559	-	glucose-specific PTS system component
560	 27.85	0	571890..573842	-	650	15594905	-	BB0560	-	heat shock protein 90
561	 30.25	0	573853..575247	+	464	15594906	-	BB0561	-	6-phosphogluconate dehydrogenase
562	 27.81	0	575274..575816	-	180	15594907	-	BB0562	-	hypothetical protein
563	 35.16	+1	575981..576526	-	181	15594908	-	BB0563	-	hypothetical protein
564	 25.74	0	576582..577187	-	201	15594909	-	BB0564	-	hypothetical protein
565	 29.83	0	577395..577937	+	180	15594910	-	BB0565	-	purine-binding chemotaxis protein (cheW-2)
566	 26.28	0	577950..578261	+	103	15594911	-	BB0566	-	hypothetical protein
567	 32.35	+1	578277..580421	+	714	15594912	-	BB0567	-	chemotaxis histidine kinase (cheA-1)
568	 30.57	0	580486..581643	+	385	15594913	-	BB0568	-	protein-glutamate methylesterase (cheB-2)
569	 25.83	0	581645..583417	+	590	15594914	-	BB0569	-	hypothetical protein
570	 36.27	+2	583458..583832	+	124	15594915	-	BB0570	-	chemotaxis response regulator (cheY-2)
571	 26.67	0	584191..584880	-	229	15594916	pyrH	BB0571	-	uridylate kinase
572	 25.72	0	585080..586156	+	358	15594917	-	BB0572	-	glycosyl transferase (lgtD)
573	 29.77	0	586212..587024	+	270	15594918	-	BB0573	-	ABC transporter, ATP-binding protein
574	 21.60	-1	587031..587882	+	283	15594919	-	BB0574	-	hypothetical protein
575	 32.33	+1	588066..589667	+	533	15594920	-	BB0575	-	CTP synthetase
576	 22.77	-1	589684..590232	-	182	15594921	-	BB0576	-	hypothetical protein
577	 29.42	0	590348..590935	+	195	15594922	-	BB0577	-	hypothetical protein
578	 30.77	0	591188..592357	+	389	15594923	-	BB0578	-	methyl-accepting chemotaxis protein (mcp-1)
579	 30.84	0	592446..595931	+	1161	15594924	dnaE	BB0579	-	DNA polymerase III subunit alpha
580	 27.29	0	595943..596521	+	192	15594925	-	BB0580	-	hypothetical protein
581	 30.81	0	596531..598591	+	686	15594926	-	BB0581	-	DNA recombinase (recG)
582	 27.12	0	598588..599376	-	262	15594927	-	BB0582	-	carboxypeptidase, putative
583	 28.89	0	599495..600844	+	449	15594928	-	BB0583	-	hypothetical protein
584	 27.69	0	600998..602344	+	448	15594929	-	BB0584	-	hypothetical protein
585	 28.69	0	602374..603729	+	451	15594930	-	BB0585	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD)
586	 24.71	0	603726..604769	-	347	15594931	-	BB0586	-	femA protein (femA)
587	 29.48	0	604779..606983	-	734	15594932	metG	BB0587	-	methionyl-tRNA synthetase
588	 30.70	0	607138..607935	+	265	15594933	-	BB0588	-	pfs protein (pfs-2)
589	 31.35	0	608020..609078	+	352	15594934	-	BB0589	-	phosphate acetyltransferase (pta)
590	 24.94	0	609061..609906	-	281	15594935	ksgA	BB0590	-	dimethyladenosine transferase
591	 23.50	-1	609943..611193	-	416	15594936	-	BB0591	-	competence locus E, putative
592	 24.51	-1	611309..612022	+	237	15594937	-	BB0592	-	hypothetical protein
593	 32.35	+1	612048..613985	+	645	15594938	-	BB0593	-	long-chain-fatty-acid CoA ligase
594	 28.55	0	614014..615789	-	591	15594939	argS	BB0594	-	arginyl-tRNA synthetase
595	 24.40	-1	615764..616390	-	208	15594940	-	BB0595	-	hypothetical protein
596	 28.35	0	616412..618559	-	715	15594941	-	BB0596	-	methyl-accepting chemotaxis protein (mcp-2)
597	 26.36	0	618828..621035	+	735	15594942	-	BB0597	-	methyl-accepting chemotaxis protein (mcp-3)
598	 28.49	0	621045..621953	-	302	15594943	-	BB0598	-	UDP-N-acetylmuramate dehydrogenase (murB)
599	 29.52	0	622005..623447	+	480	15594944	-	BB0599	-	cysteinyl-tRNA synthetase (cysS)
600	 25.18	0	623451..625007	+	518	15594945	-	BB0600	-	hypothetical protein
601	 34.21	+1	625007..626260	+	417	15594946	-	BB0601	-	serine hydroxymethyltransferase (glyA)
602	 26.03	0	626286..627038	+	250	15594947	-	BB0602	-	chaperonin, putative
603	 33.39	+1	627092..628948	-	618	15594948	-	BB0603	-	membrane-associated protein p66
604	 33.20	+1	629196..630698	-	500	15594949	-	BB0604	-	L-lactate permease (lctP)
605	 27.34	0	630769..631986	+	405	15594950	-	BB0605	-	serine-type D-Ala-D-Ala carboxypeptidase (dacA)
606	 32.52	+1	631991..632482	+	163	15594951	-	BB0606	-	chemoreceptor glutamine deamidase CheD
607	 28.03	0	632485..634464	+	659	15594952	-	BB0607	-	rep helicase, single-stranded DNA-dependent ATPase (rep)
608	 30.12	0	634581..636011	+	476	15594953	-	BB0608	-	aminoacyl-histidine dipeptidase (pepD)
609	 12.61	-2	636024..636134	-	36	15594954	-	BB0609	-	hypothetical protein
610	 27.25	0	636593..637957	+	454	15594955	tig	BB0610	-	trigger factor
611	 33.67	+1	637963..638556	+	197	15594956	-	BB0611	-	ATP-dependent Clp protease proteolytic component (clpP-1)
612	 32.79	+1	638580..639872	+	430	15594957	clpX	BB0612	-	ATP-dependent protease ATP-binding subunit
613	 30.59	0	639808..642249	+	813	15594958	-	BB0613	-	ATP-dependent protease LA (lon-2)
614	 34.64	+1	642289..642441	+	50	15594959	-	BB0614	-	hypothetical protein
615	 33.02	+1	642500..643129	-	209	15594960	rpsD	BB0615	-	30S ribosomal protein S4
616	 26.92	0	643295..644650	-	451	15594961	-	BB0616	-	hypothetical protein
617	 20.87	-1	644772..645140	+	122	15594962	-	BB0617	-	hypothetical protein
618	 27.74	0	645137..645601	-	154	15594963	-	BB0618	-	cytidine deaminase (cdd)
619	 30.01	0	645689..646681	+	330	15594964	-	BB0619	-	hypothetical protein
620	 26.26	0	646659..648326	-	555	15594965	-	BB0620	-	beta-glucosidase, putative
621	 31.89	0	648553..649107	+	184	15594966	-	BB0621	-	4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein (thiJ)
622	 28.99	0	649170..650411	-	413	15594967	-	BB0622	-	acetate kinase (ackA)
623	 26.91	0	650413..653790	-	1125	15594968	-	BB0623	-	transcription-repair coupling factor (mfd)
624	 26.58	0	653887..654849	+	320	15594969	-	BB0624	-	hypothetical protein
625	 29.37	0	654809..656902	+	697	15594970	-	BB0625	-	N-acetylmuramoyl-L-alanine amidase, putative
626	 26.56	0	656998..657543	-	181	15594971	-	BB0626	-	hypothetical protein
627	 30.27	0	657546..658817	-	423	15594972	-	BB0627	-	putative aminopeptidase 2
628	 27.69	0	658898..659623	+	241	15594973	-	BB0628	-	hypothetical protein
629	 32.96	+1	659644..661524	-	626	15594974	-	BB0629	-	PTS system, fructose-specific IIABC component (fruA-2)
630	 31.39	0	661606..662529	+	307	15594975	-	BB0630	-	1-phosphofructokinase (fruK)
631	 30.48	0	662603..662917	-	104	15594976	-	BB0631	-	hypothetical protein
632	 24.28	-1	663179..665011	-	610	15594977	-	BB0632	-	exodeoxyribonuclease V, alpha chain (recD)
633	 23.70	-1	665008..668517	-	1169	15594978	-	BB0633	-	exodeoxyribonuclease V, beta chain (recB)
634	 23.05	-1	668848..671763	-	971	15594979	-	BB0634	-	exodeoxyribonuclease V, gamma chain (recC)
635	 28.84	0	671767..673212	-	481	15594980	-	BB0635	-	nicotinate phosphoribosyltransferase
636	 28.67	0	673342..674778	+	478	15594981	-	BB0636	-	glucose-6-phosphate 1-dehydrogenase
637	 29.85	0	675029..676378	+	449	15594982	-	BB0637	-	Na+/H+ antiporter (nhaC-1)
638	 30.96	0	676472..677860	+	462	15594983	-	BB0638	-	Na+/H+ antiporter (nhaC-2)
639	 26.93	0	677892..678938	-	348	15594984	-	BB0639	-	spermidine/putrescine ABC transporter, spermidine/putrescine-binding periplasmic protein (potD)
640	 27.40	0	678959..679750	-	263	15594985	-	BB0640	-	spermidine/putrescine ABC transporter, permease protein (potC)
28.42	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.