IslandPath Analysis: Borrelia burgdorferi B31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 28.42   STD DEV: 3.85
Borrelia burgdorferi B31, complete genome - 1..910724
851 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
514	 28.22	0	524554..526254	+	566	15594859	pheT	BB0514	-	phenylalanyl-tRNA synthetase subunit beta
515	 32.42	+1	526325..527305	+	326	15594860	-	BB0515	-	thioredoxin reductase (trxB)
516	 26.78	0	527361..528047	-	228	15594861	-	BB0516	-	rRNA methylase (yacO)
517	 32.05	0	528104..529198	-	364	15594862	-	BB0517	-	heat shock protein (dnaJ-1)
518	 35.27	+1	529198..531105	-	635	15594863	dnaK	BB0518	-	molecular chaperone DnaK
519	 25.53	0	531129..531692	-	187	15594864	-	BB0519	-	grpE protein (grpE)
520	 17.95	-2	531851..531967	-	38	15594865	-	BB0520	-	hypothetical protein
521	 28.70	0	532069..532521	+	150	15594866	-	BB0521	-	hypothetical protein
522	 28.40	0	532938..533606	+	222	15594867	-	BB0522	-	NH(3)-dependent NAD+ synthetase
523	 30.11	0	533980..534072	+	30	15594868	-	BB0523	-	hypothetical protein
524	 28.07	0	534301..535155	+	284	15594869	-	BB0524	-	inositol monophosphatase
525	 26.24	0	535178..535600	-	140	15594870	-	BB0525	-	hypothetical protein
526	 25.71	0	535704..537527	+	607	15594871	-	BB0526	-	hypothetical protein
527	 26.74	0	537520..538308	+	262	15594872	-	BB0527	-	pantothenate kinase
528	 26.48	0	538328..539275	-	315	15594873	-	BB0528	-	aldose reductase, putative
529	 17.95	-2	539256..539372	+	38	15594874	-	BB0529	-	hypothetical protein
530	 29.82	0	539367..540020	-	217	15594875	-	BB0530	-	hypothetical protein
531	 27.48	0	540159..540773	-	204	15594876	-	BB0531	-	hypothetical protein
532	 25.34	0	541182..542069	-	295	15594877	-	BB0532	-	hypothetical protein
533	 31.76	0	542263..543024	+	253	15594878	-	BB0533	-	phnP protein (phnP)
534	 31.12	0	543049..543816	+	255	15594879	-	BB0534	-	exodeoxyribonuclease III (exoA)
535	 23.64	-1	543832..544605	+	257	15594880	-	BB0535	-	hypothetical protein
536	 27.19	0	544586..547387	+	933	15594881	-	BB0536	-	zinc protease, putative
537	 27.75	0	547846..548490	-	214	15594882	-	BB0537	-	hypothetical protein
538	 27.82	0	548487..548885	-	132	15594883	-	BB0538	-	hypothetical protein
539	 30.62	0	548920..549618	-	232	15594884	-	BB0539	-	hypothetical protein
540	 35.25	+1	549642..551723	-	693	15594885	-	BB0540	-	elongation factor G
541	 31.05	0	552007..552225	+	72	15594886	-	BB0541	-	hypothetical protein
542	 24.18	-1	552440..553018	+	192	15594887	-	BB0542	-	hypothetical protein
543	 31.81	0	553133..553789	+	218	15594888	-	BB0543	-	hypothetical protein
544	 30.47	0	553992..555212	+	406	15594889	-	BB0544	-	phosphoribosylpyrophosphate synthetase
545	 27.99	0	555216..556580	+	454	15594890	-	BB0545	-	xylulokinase (xylB)
546	 28.11	0	556563..557423	-	286	15594891	-	BB0546	-	hypothetical protein
547	 23.79	-1	557407..558024	-	205	15594892	coaE	BB0547	-	dephospho-CoA kinase
548	 28.09	0	558006..560732	-	908	15594893	-	BB0548	-	DNA polymerase I (polA)
549	 20.05	-2	560729..561127	-	132	15594894	-	BB0549	-	hypothetical protein
550	 26.71	0	561117..561554	-	145	15594895	-	BB0550	-	flagellar protein (flaJ)
551	 27.36	0	561563..561964	-	133	15594896	-	BB0551	-	chemotaxis response regulator (cheY-1)
552	 28.85	0	562185..564167	+	660	15594897	-	BB0552	-	DNA ligase (lig)
553	 23.49	-1	564188..565681	-	497	15594898	-	BB0553	-	hypothetical protein
554	 25.78	0	565943..567823	+	626	15594899	-	BB0554	-	hypothetical protein
555	 25.64	0	567810..568277	+	155	15594900	-	BB0555	-	hypothetical protein
556	 22.76	-1	568270..569139	+	289	15594901	-	BB0556	-	hypothetical protein
557	 36.40	+2	569278..569538	+	86	15594902	-	BB0557	-	phosphocarrier protein HPr (ptsH-2)
558	 32.93	+1	569559..571280	+	573	15594903	-	BB0558	-	phosphoenolpyruvate-protein phosphatase (ptsI)
559	 33.16	+1	571283..571852	+	189	15594904	-	BB0559	-	glucose-specific PTS system component
560	 27.85	0	571890..573842	-	650	15594905	-	BB0560	-	heat shock protein 90
561	 30.25	0	573853..575247	+	464	15594906	-	BB0561	-	6-phosphogluconate dehydrogenase
562	 27.81	0	575274..575816	-	180	15594907	-	BB0562	-	hypothetical protein
563	 35.16	+1	575981..576526	-	181	15594908	-	BB0563	-	hypothetical protein
564	 25.74	0	576582..577187	-	201	15594909	-	BB0564	-	hypothetical protein
565	 29.83	0	577395..577937	+	180	15594910	-	BB0565	-	purine-binding chemotaxis protein (cheW-2)
566	 26.28	0	577950..578261	+	103	15594911	-	BB0566	-	hypothetical protein
567	 32.35	+1	578277..580421	+	714	15594912	-	BB0567	-	chemotaxis histidine kinase (cheA-1)
568	 30.57	0	580486..581643	+	385	15594913	-	BB0568	-	protein-glutamate methylesterase (cheB-2)
569	 25.83	0	581645..583417	+	590	15594914	-	BB0569	-	hypothetical protein
570	 36.27	+2	583458..583832	+	124	15594915	-	BB0570	-	chemotaxis response regulator (cheY-2)
571	 26.67	0	584191..584880	-	229	15594916	pyrH	BB0571	-	uridylate kinase
572	 25.72	0	585080..586156	+	358	15594917	-	BB0572	-	glycosyl transferase (lgtD)
573	 29.77	0	586212..587024	+	270	15594918	-	BB0573	-	ABC transporter, ATP-binding protein
574	 21.60	-1	587031..587882	+	283	15594919	-	BB0574	-	hypothetical protein
575	 32.33	+1	588066..589667	+	533	15594920	-	BB0575	-	CTP synthetase
576	 22.77	-1	589684..590232	-	182	15594921	-	BB0576	-	hypothetical protein
577	 29.42	0	590348..590935	+	195	15594922	-	BB0577	-	hypothetical protein
578	 30.77	0	591188..592357	+	389	15594923	-	BB0578	-	methyl-accepting chemotaxis protein (mcp-1)
579	 30.84	0	592446..595931	+	1161	15594924	dnaE	BB0579	-	DNA polymerase III subunit alpha
580	 27.29	0	595943..596521	+	192	15594925	-	BB0580	-	hypothetical protein
581	 30.81	0	596531..598591	+	686	15594926	-	BB0581	-	DNA recombinase (recG)
582	 27.12	0	598588..599376	-	262	15594927	-	BB0582	-	carboxypeptidase, putative
583	 28.89	0	599495..600844	+	449	15594928	-	BB0583	-	hypothetical protein
584	 27.69	0	600998..602344	+	448	15594929	-	BB0584	-	hypothetical protein
585	 28.69	0	602374..603729	+	451	15594930	-	BB0585	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD)
586	 24.71	0	603726..604769	-	347	15594931	-	BB0586	-	femA protein (femA)
587	 29.48	0	604779..606983	-	734	15594932	metG	BB0587	-	methionyl-tRNA synthetase
588	 30.70	0	607138..607935	+	265	15594933	-	BB0588	-	pfs protein (pfs-2)
589	 31.35	0	608020..609078	+	352	15594934	-	BB0589	-	phosphate acetyltransferase (pta)
590	 24.94	0	609061..609906	-	281	15594935	ksgA	BB0590	-	dimethyladenosine transferase
591	 23.50	-1	609943..611193	-	416	15594936	-	BB0591	-	competence locus E, putative
592	 24.51	-1	611309..612022	+	237	15594937	-	BB0592	-	hypothetical protein
593	 32.35	+1	612048..613985	+	645	15594938	-	BB0593	-	long-chain-fatty-acid CoA ligase
594	 28.55	0	614014..615789	-	591	15594939	argS	BB0594	-	arginyl-tRNA synthetase
595	 24.40	-1	615764..616390	-	208	15594940	-	BB0595	-	hypothetical protein
596	 28.35	0	616412..618559	-	715	15594941	-	BB0596	-	methyl-accepting chemotaxis protein (mcp-2)
597	 26.36	0	618828..621035	+	735	15594942	-	BB0597	-	methyl-accepting chemotaxis protein (mcp-3)
598	 28.49	0	621045..621953	-	302	15594943	-	BB0598	-	UDP-N-acetylmuramate dehydrogenase (murB)
599	 29.52	0	622005..623447	+	480	15594944	-	BB0599	-	cysteinyl-tRNA synthetase (cysS)
600	 25.18	0	623451..625007	+	518	15594945	-	BB0600	-	hypothetical protein
601	 34.21	+1	625007..626260	+	417	15594946	-	BB0601	-	serine hydroxymethyltransferase (glyA)
602	 26.03	0	626286..627038	+	250	15594947	-	BB0602	-	chaperonin, putative
603	 33.39	+1	627092..628948	-	618	15594948	-	BB0603	-	membrane-associated protein p66
604	 33.20	+1	629196..630698	-	500	15594949	-	BB0604	-	L-lactate permease (lctP)
605	 27.34	0	630769..631986	+	405	15594950	-	BB0605	-	serine-type D-Ala-D-Ala carboxypeptidase (dacA)
606	 32.52	+1	631991..632482	+	163	15594951	-	BB0606	-	chemoreceptor glutamine deamidase CheD
607	 28.03	0	632485..634464	+	659	15594952	-	BB0607	-	rep helicase, single-stranded DNA-dependent ATPase (rep)
608	 30.12	0	634581..636011	+	476	15594953	-	BB0608	-	aminoacyl-histidine dipeptidase (pepD)
609	 12.61	-2	636024..636134	-	36	15594954	-	BB0609	-	hypothetical protein
610	 27.25	0	636593..637957	+	454	15594955	tig	BB0610	-	trigger factor
611	 33.67	+1	637963..638556	+	197	15594956	-	BB0611	-	ATP-dependent Clp protease proteolytic component (clpP-1)
612	 32.79	+1	638580..639872	+	430	15594957	clpX	BB0612	-	ATP-dependent protease ATP-binding subunit
613	 30.59	0	639808..642249	+	813	15594958	-	BB0613	-	ATP-dependent protease LA (lon-2)
28.42	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.