IslandPath Analysis: Borrelia burgdorferi B31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 28.42   STD DEV: 3.85
Borrelia burgdorferi B31, complete genome - 1..910724
851 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
485	 39.09	+2	500593..501009	+	138	15594830	rplP	BB0485	-	50S ribosomal protein L16
486	 27.36	0	501012..501212	+	66	15594831	-	BB0486	-	50S ribosomal protein L29
487	 26.67	0	501215..501469	+	84	15594832	rpsQ	BB0487	-	30S ribosomal protein S17
488	 36.04	+1	501497..501865	+	122	161511077	rplN	BB0488	-	50S ribosomal protein L14
489	 30.72	0	501880..502185	+	101	15594834	rplX	BB0489	-	50S ribosomal protein L24
490	 32.42	+1	502191..502739	+	182	15594835	rplE	BB0490	-	50S ribosomal protein L5
491	 31.18	0	502756..502941	+	61	161511076	rpsN	BB0491	-	30S ribosomal protein S14
492	 28.57	0	502951..503349	+	132	15594837	rpsH	BB0492	-	30S ribosomal protein S8
493	 32.78	+1	503366..503908	+	180	15594838	rplF	BB0493	-	50S ribosomal protein L6
494	 29.17	0	503926..504285	+	119	15594839	rplR	BB0494	-	50S ribosomal protein L18
495	 36.95	+2	504298..504795	+	165	15594840	rpsE	BB0495	-	30S ribosomal protein S5
496	 23.53	-1	504799..505104	+	101	15594841	-	BB0496	-	ribosomal protein L30 (rpmD)
497	 32.19	0	505104..505541	+	145	15594842	rplO	BB0497	-	50S ribosomal protein L15
498	 30.11	0	505554..506858	+	434	15594843	secY	BB0498	-	preprotein translocase subunit SecY
499	 23.33	-1	506865..506984	+	39	15594844	rpmJ	BB0499	-	50S ribosomal protein L36
500	 32.28	+1	507002..507379	+	125	15594845	rpsM	BB0500	-	30S ribosomal protein S13
501	 35.31	+1	507394..507798	+	134	15594846	-	BB0501	-	30S ribosomal protein S11
502	 30.92	0	507811..508848	+	345	15594847	-	BB0502	-	DNA-directed RNA polymerase subunit alpha
503	 29.84	0	508870..509241	+	123	15594848	rplQ	BB0503	-	50S ribosomal protein L17
504	 33.72	+1	509314..510846	+	510	15594849	-	BB0504	-	phosphodiesterase
505	 29.15	0	510836..511624	+	262	15594850	-	BB0505	-	hypothetical protein
506	 25.25	0	511605..512396	+	263	15594851	-	BB0506	-	hemolysin (tlyA)
507	 22.75	-1	512393..513148	-	251	15594852	-	BB0507	-	hypothetical protein
508	 28.42	0	513226..514527	+	433	15594853	engA	BB0508	-	GTP-binding protein EngA
509	 27.62	0	514524..515783	+	419	15594854	-	BB0509	-	hypothetical protein
510	 29.22	0	515780..515998	+	72	15594855	-	BB0510	-	hypothetical protein
511	 27.34	0	516090..516473	+	127	15594856	-	BB0511	-	hypothetical protein
512	 26.10	0	516493..522993	+	2166	15594857	-	BB0512	-	hypothetical protein
513	 31.32	0	522990..524576	+	528	15594858	pheS	BB0513	-	phenylalanyl-tRNA synthetase subunit alpha
514	 28.22	0	524554..526254	+	566	15594859	pheT	BB0514	-	phenylalanyl-tRNA synthetase subunit beta
515	 32.42	+1	526325..527305	+	326	15594860	-	BB0515	-	thioredoxin reductase (trxB)
516	 26.78	0	527361..528047	-	228	15594861	-	BB0516	-	rRNA methylase (yacO)
517	 32.05	0	528104..529198	-	364	15594862	-	BB0517	-	heat shock protein (dnaJ-1)
518	 35.27	+1	529198..531105	-	635	15594863	dnaK	BB0518	-	molecular chaperone DnaK
519	 25.53	0	531129..531692	-	187	15594864	-	BB0519	-	grpE protein (grpE)
520	 17.95	-2	531851..531967	-	38	15594865	-	BB0520	-	hypothetical protein
521	 28.70	0	532069..532521	+	150	15594866	-	BB0521	-	hypothetical protein
522	 28.40	0	532938..533606	+	222	15594867	-	BB0522	-	NH(3)-dependent NAD+ synthetase
523	 30.11	0	533980..534072	+	30	15594868	-	BB0523	-	hypothetical protein
524	 28.07	0	534301..535155	+	284	15594869	-	BB0524	-	inositol monophosphatase
525	 26.24	0	535178..535600	-	140	15594870	-	BB0525	-	hypothetical protein
526	 25.71	0	535704..537527	+	607	15594871	-	BB0526	-	hypothetical protein
527	 26.74	0	537520..538308	+	262	15594872	-	BB0527	-	pantothenate kinase
528	 26.48	0	538328..539275	-	315	15594873	-	BB0528	-	aldose reductase, putative
529	 17.95	-2	539256..539372	+	38	15594874	-	BB0529	-	hypothetical protein
530	 29.82	0	539367..540020	-	217	15594875	-	BB0530	-	hypothetical protein
531	 27.48	0	540159..540773	-	204	15594876	-	BB0531	-	hypothetical protein
532	 25.34	0	541182..542069	-	295	15594877	-	BB0532	-	hypothetical protein
533	 31.76	0	542263..543024	+	253	15594878	-	BB0533	-	phnP protein (phnP)
534	 31.12	0	543049..543816	+	255	15594879	-	BB0534	-	exodeoxyribonuclease III (exoA)
535	 23.64	-1	543832..544605	+	257	15594880	-	BB0535	-	hypothetical protein
536	 27.19	0	544586..547387	+	933	15594881	-	BB0536	-	zinc protease, putative
537	 27.75	0	547846..548490	-	214	15594882	-	BB0537	-	hypothetical protein
538	 27.82	0	548487..548885	-	132	15594883	-	BB0538	-	hypothetical protein
539	 30.62	0	548920..549618	-	232	15594884	-	BB0539	-	hypothetical protein
540	 35.25	+1	549642..551723	-	693	15594885	-	BB0540	-	elongation factor G
541	 31.05	0	552007..552225	+	72	15594886	-	BB0541	-	hypothetical protein
542	 24.18	-1	552440..553018	+	192	15594887	-	BB0542	-	hypothetical protein
543	 31.81	0	553133..553789	+	218	15594888	-	BB0543	-	hypothetical protein
544	 30.47	0	553992..555212	+	406	15594889	-	BB0544	-	phosphoribosylpyrophosphate synthetase
545	 27.99	0	555216..556580	+	454	15594890	-	BB0545	-	xylulokinase (xylB)
546	 28.11	0	556563..557423	-	286	15594891	-	BB0546	-	hypothetical protein
547	 23.79	-1	557407..558024	-	205	15594892	coaE	BB0547	-	dephospho-CoA kinase
548	 28.09	0	558006..560732	-	908	15594893	-	BB0548	-	DNA polymerase I (polA)
549	 20.05	-2	560729..561127	-	132	15594894	-	BB0549	-	hypothetical protein
550	 26.71	0	561117..561554	-	145	15594895	-	BB0550	-	flagellar protein (flaJ)
551	 27.36	0	561563..561964	-	133	15594896	-	BB0551	-	chemotaxis response regulator (cheY-1)
552	 28.85	0	562185..564167	+	660	15594897	-	BB0552	-	DNA ligase (lig)
553	 23.49	-1	564188..565681	-	497	15594898	-	BB0553	-	hypothetical protein
554	 25.78	0	565943..567823	+	626	15594899	-	BB0554	-	hypothetical protein
555	 25.64	0	567810..568277	+	155	15594900	-	BB0555	-	hypothetical protein
556	 22.76	-1	568270..569139	+	289	15594901	-	BB0556	-	hypothetical protein
557	 36.40	+2	569278..569538	+	86	15594902	-	BB0557	-	phosphocarrier protein HPr (ptsH-2)
558	 32.93	+1	569559..571280	+	573	15594903	-	BB0558	-	phosphoenolpyruvate-protein phosphatase (ptsI)
559	 33.16	+1	571283..571852	+	189	15594904	-	BB0559	-	glucose-specific PTS system component
560	 27.85	0	571890..573842	-	650	15594905	-	BB0560	-	heat shock protein 90
561	 30.25	0	573853..575247	+	464	15594906	-	BB0561	-	6-phosphogluconate dehydrogenase
562	 27.81	0	575274..575816	-	180	15594907	-	BB0562	-	hypothetical protein
563	 35.16	+1	575981..576526	-	181	15594908	-	BB0563	-	hypothetical protein
564	 25.74	0	576582..577187	-	201	15594909	-	BB0564	-	hypothetical protein
565	 29.83	0	577395..577937	+	180	15594910	-	BB0565	-	purine-binding chemotaxis protein (cheW-2)
566	 26.28	0	577950..578261	+	103	15594911	-	BB0566	-	hypothetical protein
567	 32.35	+1	578277..580421	+	714	15594912	-	BB0567	-	chemotaxis histidine kinase (cheA-1)
568	 30.57	0	580486..581643	+	385	15594913	-	BB0568	-	protein-glutamate methylesterase (cheB-2)
569	 25.83	0	581645..583417	+	590	15594914	-	BB0569	-	hypothetical protein
570	 36.27	+2	583458..583832	+	124	15594915	-	BB0570	-	chemotaxis response regulator (cheY-2)
571	 26.67	0	584191..584880	-	229	15594916	pyrH	BB0571	-	uridylate kinase
572	 25.72	0	585080..586156	+	358	15594917	-	BB0572	-	glycosyl transferase (lgtD)
573	 29.77	0	586212..587024	+	270	15594918	-	BB0573	-	ABC transporter, ATP-binding protein
574	 21.60	-1	587031..587882	+	283	15594919	-	BB0574	-	hypothetical protein
575	 32.33	+1	588066..589667	+	533	15594920	-	BB0575	-	CTP synthetase
576	 22.77	-1	589684..590232	-	182	15594921	-	BB0576	-	hypothetical protein
577	 29.42	0	590348..590935	+	195	15594922	-	BB0577	-	hypothetical protein
578	 30.77	0	591188..592357	+	389	15594923	-	BB0578	-	methyl-accepting chemotaxis protein (mcp-1)
579	 30.84	0	592446..595931	+	1161	15594924	dnaE	BB0579	-	DNA polymerase III subunit alpha
580	 27.29	0	595943..596521	+	192	15594925	-	BB0580	-	hypothetical protein
581	 30.81	0	596531..598591	+	686	15594926	-	BB0581	-	DNA recombinase (recG)
582	 27.12	0	598588..599376	-	262	15594927	-	BB0582	-	carboxypeptidase, putative
583	 28.89	0	599495..600844	+	449	15594928	-	BB0583	-	hypothetical protein
584	 27.69	0	600998..602344	+	448	15594929	-	BB0584	-	hypothetical protein
28.42	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.