IslandPath Analysis: Borrelia burgdorferi B31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 28.42   STD DEV: 3.85
Borrelia burgdorferi B31, complete genome - 1..910724
851 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
448	 27.17	0	469390..469665	-	91	15594793	-	BB0448	-	phosphocarrier protein HPr (ptsH-1)
449	 24.83	0	469678..469971	-	97	15594794	-	BB0449	-	hypothetical protein
450	 25.40	0	469961..471220	-	419	15594795	-	BB0450	-	RNA polymerase sigma-54 factor (ntrA)
451	 26.03	0	471223..471756	-	177	15594796	-	BB0451	-	chromate transport protein, putative
452	 24.40	-1	471771..472475	-	234	15594797	-	BB0452	-	hypothetical protein
453	 27.16	0	472566..473408	+	280	15594798	-	BB0453	-	hypothetical protein
454	 25.35	0	473405..474556	-	383	15594799	-	BB0454	-	lipopolysaccharide biosynthesis-related protein
455	 23.13	-1	474613..475602	+	329	15594800	-	BB0455	-	hypothetical protein
456	 24.09	-1	475606..476211	+	201	15594801	-	BB0456	-	hypothetical protein
457	 27.15	0	476263..478074	-	603	15594802	-	BB0457	-	excinuclease ABC, subunit C (uvrC)
458	 28.96	0	478139..479716	+	525	15594803	-	BB0458	-	hypothetical protein
459	 26.01	0	479709..481019	+	436	15594804	-	BB0459	-	hypothetical protein
460	 23.53	-1	481344..482057	-	237	15594805	-	BB0460	-	hypothetical protein
461	 29.71	0	482600..484282	+	560	15594806	-	BB0461	-	DNA polymerase III subunits gamma and tau
462	 29.43	0	484254..484586	+	110	15594807	-	BB0462	-	hypothetical protein
463	 32.16	0	484757..485266	+	169	15594808	-	BB0463	-	nucleoside-diphosphate kinase (ndk)
464	 26.70	0	485550..486077	+	175	15594809	-	BB0464	-	hypothetical protein
465	 28.02	0	486074..486769	+	231	15594810	-	BB0465	-	hypothetical protein
466	 32.85	+1	486705..487538	+	277	15594811	-	BB0466	-	ABC transporter, ATP-binding protein
467	 24.35	-1	487535..488224	+	229	15594812	-	BB0467	-	hypothetical protein
468	 28.25	0	488226..488972	+	248	15594813	-	BB0468	-	hypothetical protein
469	 23.98	-1	488983..489495	+	170	15594814	lspA	BB0469	-	signal peptidase II
470	 22.81	-1	489492..489719	+	75	15594815	-	BB0470	-	hypothetical protein
471	 28.59	0	489733..490554	+	273	15594816	-	BB0471	-	hypothetical protein
472	 34.69	+1	490599..491927	+	442	15594817	-	BB0472	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
473	 28.21	0	492588..493952	+	454	15594818	-	BB0473	-	hypothetical protein
474	 20.59	-2	493991..494092	+	33	15594819	-	BB0474	-	hypothetical protein
475	 24.17	-1	494150..494542	-	130	15594820	-	BB0475	-	hypothetical protein
476	 35.95	+1	495033..496217	+	394	161511078	-	BB0476	-	elongation factor Tu
477	 33.65	+1	496268..496579	+	103	15594822	rpsJ	BB0477	-	30S ribosomal protein S10
478	 37.20	+2	496615..497235	+	206	15594823	rplC	BB0478	-	50S ribosomal protein L3
479	 31.90	0	497245..497874	+	209	15594824	rplD	BB0479	-	50S ribosomal protein L4
480	 30.45	0	497880..498191	+	103	15594825	rplW	BB0480	-	50S ribosomal protein L23
481	 35.49	+1	498213..499046	+	277	15594826	rplB	BB0481	-	50S ribosomal protein L2
482	 34.41	+1	499056..499334	+	92	15594827	rpsS	BB0482	-	30S ribosomal protein S19
483	 34.99	+1	499341..499703	+	120	15594828	rplV	BB0483	-	50S ribosomal protein L22
484	 32.20	0	499707..500588	+	293	15594829	rpsC	BB0484	-	30S ribosomal protein S3
485	 39.09	+2	500593..501009	+	138	15594830	rplP	BB0485	-	50S ribosomal protein L16
486	 27.36	0	501012..501212	+	66	15594831	-	BB0486	-	50S ribosomal protein L29
487	 26.67	0	501215..501469	+	84	15594832	rpsQ	BB0487	-	30S ribosomal protein S17
488	 36.04	+1	501497..501865	+	122	161511077	rplN	BB0488	-	50S ribosomal protein L14
489	 30.72	0	501880..502185	+	101	15594834	rplX	BB0489	-	50S ribosomal protein L24
490	 32.42	+1	502191..502739	+	182	15594835	rplE	BB0490	-	50S ribosomal protein L5
491	 31.18	0	502756..502941	+	61	161511076	rpsN	BB0491	-	30S ribosomal protein S14
492	 28.57	0	502951..503349	+	132	15594837	rpsH	BB0492	-	30S ribosomal protein S8
493	 32.78	+1	503366..503908	+	180	15594838	rplF	BB0493	-	50S ribosomal protein L6
494	 29.17	0	503926..504285	+	119	15594839	rplR	BB0494	-	50S ribosomal protein L18
495	 36.95	+2	504298..504795	+	165	15594840	rpsE	BB0495	-	30S ribosomal protein S5
496	 23.53	-1	504799..505104	+	101	15594841	-	BB0496	-	ribosomal protein L30 (rpmD)
497	 32.19	0	505104..505541	+	145	15594842	rplO	BB0497	-	50S ribosomal protein L15
498	 30.11	0	505554..506858	+	434	15594843	secY	BB0498	-	preprotein translocase subunit SecY
499	 23.33	-1	506865..506984	+	39	15594844	rpmJ	BB0499	-	50S ribosomal protein L36
500	 32.28	+1	507002..507379	+	125	15594845	rpsM	BB0500	-	30S ribosomal protein S13
501	 35.31	+1	507394..507798	+	134	15594846	-	BB0501	-	30S ribosomal protein S11
502	 30.92	0	507811..508848	+	345	15594847	-	BB0502	-	DNA-directed RNA polymerase subunit alpha
503	 29.84	0	508870..509241	+	123	15594848	rplQ	BB0503	-	50S ribosomal protein L17
504	 33.72	+1	509314..510846	+	510	15594849	-	BB0504	-	phosphodiesterase
505	 29.15	0	510836..511624	+	262	15594850	-	BB0505	-	hypothetical protein
506	 25.25	0	511605..512396	+	263	15594851	-	BB0506	-	hemolysin (tlyA)
507	 22.75	-1	512393..513148	-	251	15594852	-	BB0507	-	hypothetical protein
508	 28.42	0	513226..514527	+	433	15594853	engA	BB0508	-	GTP-binding protein EngA
509	 27.62	0	514524..515783	+	419	15594854	-	BB0509	-	hypothetical protein
510	 29.22	0	515780..515998	+	72	15594855	-	BB0510	-	hypothetical protein
511	 27.34	0	516090..516473	+	127	15594856	-	BB0511	-	hypothetical protein
512	 26.10	0	516493..522993	+	2166	15594857	-	BB0512	-	hypothetical protein
513	 31.32	0	522990..524576	+	528	15594858	pheS	BB0513	-	phenylalanyl-tRNA synthetase subunit alpha
514	 28.22	0	524554..526254	+	566	15594859	pheT	BB0514	-	phenylalanyl-tRNA synthetase subunit beta
515	 32.42	+1	526325..527305	+	326	15594860	-	BB0515	-	thioredoxin reductase (trxB)
516	 26.78	0	527361..528047	-	228	15594861	-	BB0516	-	rRNA methylase (yacO)
517	 32.05	0	528104..529198	-	364	15594862	-	BB0517	-	heat shock protein (dnaJ-1)
518	 35.27	+1	529198..531105	-	635	15594863	dnaK	BB0518	-	molecular chaperone DnaK
519	 25.53	0	531129..531692	-	187	15594864	-	BB0519	-	grpE protein (grpE)
520	 17.95	-2	531851..531967	-	38	15594865	-	BB0520	-	hypothetical protein
521	 28.70	0	532069..532521	+	150	15594866	-	BB0521	-	hypothetical protein
522	 28.40	0	532938..533606	+	222	15594867	-	BB0522	-	NH(3)-dependent NAD+ synthetase
523	 30.11	0	533980..534072	+	30	15594868	-	BB0523	-	hypothetical protein
524	 28.07	0	534301..535155	+	284	15594869	-	BB0524	-	inositol monophosphatase
525	 26.24	0	535178..535600	-	140	15594870	-	BB0525	-	hypothetical protein
526	 25.71	0	535704..537527	+	607	15594871	-	BB0526	-	hypothetical protein
527	 26.74	0	537520..538308	+	262	15594872	-	BB0527	-	pantothenate kinase
528	 26.48	0	538328..539275	-	315	15594873	-	BB0528	-	aldose reductase, putative
529	 17.95	-2	539256..539372	+	38	15594874	-	BB0529	-	hypothetical protein
530	 29.82	0	539367..540020	-	217	15594875	-	BB0530	-	hypothetical protein
531	 27.48	0	540159..540773	-	204	15594876	-	BB0531	-	hypothetical protein
532	 25.34	0	541182..542069	-	295	15594877	-	BB0532	-	hypothetical protein
533	 31.76	0	542263..543024	+	253	15594878	-	BB0533	-	phnP protein (phnP)
534	 31.12	0	543049..543816	+	255	15594879	-	BB0534	-	exodeoxyribonuclease III (exoA)
535	 23.64	-1	543832..544605	+	257	15594880	-	BB0535	-	hypothetical protein
536	 27.19	0	544586..547387	+	933	15594881	-	BB0536	-	zinc protease, putative
537	 27.75	0	547846..548490	-	214	15594882	-	BB0537	-	hypothetical protein
538	 27.82	0	548487..548885	-	132	15594883	-	BB0538	-	hypothetical protein
539	 30.62	0	548920..549618	-	232	15594884	-	BB0539	-	hypothetical protein
540	 35.25	+1	549642..551723	-	693	15594885	-	BB0540	-	elongation factor G
541	 31.05	0	552007..552225	+	72	15594886	-	BB0541	-	hypothetical protein
542	 24.18	-1	552440..553018	+	192	15594887	-	BB0542	-	hypothetical protein
543	 31.81	0	553133..553789	+	218	15594888	-	BB0543	-	hypothetical protein
544	 30.47	0	553992..555212	+	406	15594889	-	BB0544	-	phosphoribosylpyrophosphate synthetase
545	 27.99	0	555216..556580	+	454	15594890	-	BB0545	-	xylulokinase (xylB)
546	 28.11	0	556563..557423	-	286	15594891	-	BB0546	-	hypothetical protein
547	 23.79	-1	557407..558024	-	205	15594892	coaE	BB0547	-	dephospho-CoA kinase
28.42	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.