IslandPath Analysis: Borrelia burgdorferi B31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 28.42   STD DEV: 3.85
Borrelia burgdorferi B31, complete genome - 1..910724
851 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
395	 30.99	0	407922..408092	-	56	15594740	secE	BB0395	-	preprotein translocase subunit SecE
396	 30.00	0	408201..408380	-	59	15594741	rpmG	BB0396	-	50S ribosomal protein L33
397	 27.56	0	408554..409402	-	282	15594742	-	BB0397	-	hypothetical protein
398	 26.07	0	409416..410447	-	343	15594743	-	BB0398	-	hypothetical protein
399	 21.82	-1	410787..411446	+	219	15594744	-	BB0399	-	hypothetical protein
400	 29.27	0	411456..413006	-	516	15594745	-	BB0400	-	hypothetical protein
401	 24.69	0	413113..414315	+	400	15594746	-	BB0401	-	glutamate transporter, putative
402	 33.27	+1	414327..415793	-	488	15594747	-	BB0402	-	prolyl-tRNA synthetase
403	 24.34	-1	415846..416523	-	225	15594748	-	BB0403	-	hypothetical protein
404	 20.62	-2	416689..417105	+	138	15594749	-	BB0404	-	hypothetical protein
405	 35.13	+1	417102..417713	+	203	15594750	-	BB0405	-	hypothetical protein
406	 28.92	0	417724..418335	+	203	15594751	-	BB0406	-	hypothetical protein
407	 29.31	0	418388..419506	-	372	15594752	-	BB0407	-	mannose-6-phosphate isomerase (manA)
408	 35.62	+1	419503..421380	-	625	15594753	-	BB0408	-	PTS system, fructose-specific IIABC component (fruA-1)
409	 27.46	0	421554..422183	+	209	15594754	-	BB0409	-	hypothetical protein
410	 23.33	-1	422180..422299	+	39	15594755	-	BB0410	-	hypothetical protein
411	 25.17	0	422471..423058	+	195	15594756	-	BB0411	-	endonuclease precursor (nucA)
412	 23.59	-1	423055..423834	+	259	15594757	-	BB0412	-	hypothetical protein
413	 24.36	-1	423822..424445	-	207	15594758	-	BB0413	-	hypothetical protein
414	 24.48	-1	424694..425551	+	285	15594759	-	BB0414	-	chemotaxis protein methyltransferase (cheR-2)
415	 29.34	0	425584..426711	+	375	15594760	-	BB0415	-	protein-glutamate methylesterase (cheB-1)
416	 28.48	0	426736..427950	+	404	15594761	-	BB0416	-	pheromone shutdown protein (traB)
417	 28.46	0	427987..428622	+	211	15594762	-	BB0417	-	adenylate kinase (adk)
418	 30.71	0	428646..429674	+	342	15594763	-	BB0418	-	hypothetical protein
419	 30.95	0	429693..430616	-	307	15594764	-	BB0419	-	response regulatory protein (rrp-1)
420	 25.98	0	430619..435103	-	1494	15594765	-	BB0420	-	sensory transduction histidine kinase, putative
421	 26.55	0	441713..442552	-	279	15594766	-	BB0421	-	hydrolase
422	 31.19	0	442688..443248	-	186	15594767	-	BB0422	-	3-methyladenine DNA glycosylase (mag)
423	 35.40	+1	443763..444053	-	96	15594768	-	BB0423	-	hypothetical protein
424	 31.33	0	444150..444299	+	49	15594769	-	BB0424	-	hypothetical protein
425	 23.66	-1	446113..446205	-	30	15594770	-	BB0425	-	hypothetical protein
426	 30.50	0	446327..446890	-	187	15594771	-	BB0426	-	hypothetical protein
427	 31.44	0	446969..447760	-	263	15594772	-	BB0427	-	hypothetical protein
428	 26.73	0	447855..448172	+	105	15594773	-	BB0428	-	hypothetical protein
429	 30.26	0	448202..448591	-	129	15594774	-	BB0429	-	hypothetical protein
430	 24.26	-1	448705..449310	+	201	15594775	-	BB0430	-	proline dipeptidase (pepQ)
431	 27.22	0	449419..450171	+	250	15594776	-	BB0431	-	hypothetical protein
432	 21.99	-1	450174..450887	+	237	15594777	-	BB0432	-	hypothetical protein
433	 20.20	-2	450972..451070	-	32	15594778	-	BB0433	-	hypothetical protein
434	 26.95	0	451139..451921	-	260	15594779	-	BB0434	-	stage 0 sporulation protein J (spo0J)
435	 30.91	0	452040..454472	-	810	15594780	-	BB0435	-	DNA gyrase, subunit A (gyrA)
436	 32.08	0	454484..456403	-	639	15594781	-	BB0436	-	DNA gyrase, subunit B (gyrB)
437	 27.79	0	456576..458036	+	486	15594782	-	BB0437	-	chromosomal replication initiator protein (dnaA)
438	 25.65	0	458277..459434	+	385	15594783	-	BB0438	-	DNA polymerase III, subunit beta (dnaN)
439	 25.67	0	459525..459824	+	99	15594784	-	BB0439	-	hypothetical protein
440	 32.69	+1	459916..460071	+	51	15594785	rpmH	BB0440	-	50S ribosomal protein L34
441	 27.50	0	460052..460411	+	119	15594786	-	BB0441	-	ribonuclease P protein component (rnpA)
442	 27.16	0	460398..462032	+	544	15594787	-	BB0442	-	putative inner membrane protein translocase component YidC
443	 29.77	0	462045..462773	+	242	15594788	-	BB0443	-	spoIIIJ-associtated protein (jag)
444	 31.27	0	462819..463886	+	355	15594789	-	BB0444	-	nucleotide sugar epimerase
445	 32.78	+1	464053..465132	+	359	15594790	-	BB0445	-	fructose-bisphosphate aldolase
446	 28.51	0	465518..467278	-	586	161511079	aspS	BB0446	-	aspartyl-tRNA synthetase
447	 29.82	0	467282..469387	-	701	15594792	-	BB0447	-	Na+/H+ antiporter (napA)
448	 27.17	0	469390..469665	-	91	15594793	-	BB0448	-	phosphocarrier protein HPr (ptsH-1)
449	 24.83	0	469678..469971	-	97	15594794	-	BB0449	-	hypothetical protein
450	 25.40	0	469961..471220	-	419	15594795	-	BB0450	-	RNA polymerase sigma-54 factor (ntrA)
451	 26.03	0	471223..471756	-	177	15594796	-	BB0451	-	chromate transport protein, putative
452	 24.40	-1	471771..472475	-	234	15594797	-	BB0452	-	hypothetical protein
453	 27.16	0	472566..473408	+	280	15594798	-	BB0453	-	hypothetical protein
454	 25.35	0	473405..474556	-	383	15594799	-	BB0454	-	lipopolysaccharide biosynthesis-related protein
455	 23.13	-1	474613..475602	+	329	15594800	-	BB0455	-	hypothetical protein
456	 24.09	-1	475606..476211	+	201	15594801	-	BB0456	-	hypothetical protein
457	 27.15	0	476263..478074	-	603	15594802	-	BB0457	-	excinuclease ABC, subunit C (uvrC)
458	 28.96	0	478139..479716	+	525	15594803	-	BB0458	-	hypothetical protein
459	 26.01	0	479709..481019	+	436	15594804	-	BB0459	-	hypothetical protein
460	 23.53	-1	481344..482057	-	237	15594805	-	BB0460	-	hypothetical protein
461	 29.71	0	482600..484282	+	560	15594806	-	BB0461	-	DNA polymerase III subunits gamma and tau
462	 29.43	0	484254..484586	+	110	15594807	-	BB0462	-	hypothetical protein
463	 32.16	0	484757..485266	+	169	15594808	-	BB0463	-	nucleoside-diphosphate kinase (ndk)
464	 26.70	0	485550..486077	+	175	15594809	-	BB0464	-	hypothetical protein
465	 28.02	0	486074..486769	+	231	15594810	-	BB0465	-	hypothetical protein
466	 32.85	+1	486705..487538	+	277	15594811	-	BB0466	-	ABC transporter, ATP-binding protein
467	 24.35	-1	487535..488224	+	229	15594812	-	BB0467	-	hypothetical protein
468	 28.25	0	488226..488972	+	248	15594813	-	BB0468	-	hypothetical protein
469	 23.98	-1	488983..489495	+	170	15594814	lspA	BB0469	-	signal peptidase II
470	 22.81	-1	489492..489719	+	75	15594815	-	BB0470	-	hypothetical protein
471	 28.59	0	489733..490554	+	273	15594816	-	BB0471	-	hypothetical protein
472	 34.69	+1	490599..491927	+	442	15594817	-	BB0472	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
473	 28.21	0	492588..493952	+	454	15594818	-	BB0473	-	hypothetical protein
474	 20.59	-2	493991..494092	+	33	15594819	-	BB0474	-	hypothetical protein
475	 24.17	-1	494150..494542	-	130	15594820	-	BB0475	-	hypothetical protein
476	 35.95	+1	495033..496217	+	394	161511078	-	BB0476	-	elongation factor Tu
477	 33.65	+1	496268..496579	+	103	15594822	rpsJ	BB0477	-	30S ribosomal protein S10
478	 37.20	+2	496615..497235	+	206	15594823	rplC	BB0478	-	50S ribosomal protein L3
479	 31.90	0	497245..497874	+	209	15594824	rplD	BB0479	-	50S ribosomal protein L4
480	 30.45	0	497880..498191	+	103	15594825	rplW	BB0480	-	50S ribosomal protein L23
481	 35.49	+1	498213..499046	+	277	15594826	rplB	BB0481	-	50S ribosomal protein L2
482	 34.41	+1	499056..499334	+	92	15594827	rpsS	BB0482	-	30S ribosomal protein S19
483	 34.99	+1	499341..499703	+	120	15594828	rplV	BB0483	-	50S ribosomal protein L22
484	 32.20	0	499707..500588	+	293	15594829	rpsC	BB0484	-	30S ribosomal protein S3
485	 39.09	+2	500593..501009	+	138	15594830	rplP	BB0485	-	50S ribosomal protein L16
486	 27.36	0	501012..501212	+	66	15594831	-	BB0486	-	50S ribosomal protein L29
487	 26.67	0	501215..501469	+	84	15594832	rpsQ	BB0487	-	30S ribosomal protein S17
488	 36.04	+1	501497..501865	+	122	161511077	rplN	BB0488	-	50S ribosomal protein L14
489	 30.72	0	501880..502185	+	101	15594834	rplX	BB0489	-	50S ribosomal protein L24
490	 32.42	+1	502191..502739	+	182	15594835	rplE	BB0490	-	50S ribosomal protein L5
491	 31.18	0	502756..502941	+	61	161511076	rpsN	BB0491	-	30S ribosomal protein S14
492	 28.57	0	502951..503349	+	132	15594837	rpsH	BB0492	-	30S ribosomal protein S8
493	 32.78	+1	503366..503908	+	180	15594838	rplF	BB0493	-	50S ribosomal protein L6
494	 29.17	0	503926..504285	+	119	15594839	rplR	BB0494	-	50S ribosomal protein L18
28.42	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.