IslandPath Analysis: Borrelia burgdorferi B31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 28.42   STD DEV: 3.85
Borrelia burgdorferi B31, complete genome - 1..910724
851 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
351	 26.39	0	359513..361081	-	522	15594696	-	BB0351	-	hypothetical protein
352	 22.05	-1	361188..362321	+	377	15594697	-	BB0352	-	hypothetical protein
353	 23.22	-1	362318..364117	-	599	15594698	-	BB0353	-	hypothetical protein
354	 22.09	-1	364130..365170	-	346	15594699	-	BB0354	-	hypothetical protein
355	 28.02	0	365115..365603	-	162	15594700	-	BB0355	-	transcription factor, putative
356	 21.82	-1	365643..366137	-	164	15594701	-	BB0356	-	hypothetical protein
357	 30.11	0	366144..366236	-	30	15594702	-	BB0357	-	hypothetical protein
358	 28.01	0	366229..366960	-	243	15594703	-	BB0358	-	hypothetical protein
359	 29.20	0	366964..368391	-	475	15594704	-	BB0359	-	carboxyl-terminal protease (CTP)
360	 24.65	0	368456..368881	+	141	15594705	-	BB0360	-	hypothetical protein
361	 27.91	0	368885..370027	+	380	15594706	-	BB0361	-	ATP-binding protein (ylxH-2)
362	 32.02	0	370027..371013	+	328	15594707	-	BB0362	-	prolipoprotein diacylglyceryl transferase
363	 24.29	-1	371034..373046	+	670	15594708	-	BB0363	-	periplasmic protein
364	 34.91	+1	373140..373520	+	126	15594709	mgsA	BB0364	-	methylglyoxal synthase
365	 29.91	0	373567..374151	-	194	15594710	-	BB0365	-	lipoprotein LA7
366	 32.53	+1	374277..375653	+	458	15594711	-	BB0366	-	putative aminopeptidase 1
367	 24.01	-1	375661..375939	+	92	15594712	-	BB0367	-	hypothetical protein
368	 28.85	0	375961..377052	-	363	15594713	gpsA	BB0368	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
369	 27.44	0	377039..379330	-	763	15594714	-	BB0369	-	ATP-dependent Clp protease, subunit A (clpA)
370	 30.05	0	379341..380558	-	405	15594715	-	BB0370	-	tyrosyl-tRNA synthetase (tyrS)
371	 33.63	+1	380555..381892	-	445	15594716	-	BB0371	-	glycyl-tRNA synthetase
372	 31.50	0	381910..383382	-	490	15594717	gltX	BB0372	-	glutamyl-tRNA synthetase
373	 22.66	-1	383395..384162	-	255	15594718	-	BB0373	-	hypothetical protein
374	 26.58	0	384287..385426	+	379	15594719	-	BB0374	-	hypothetical protein
375	 28.57	0	385449..386162	+	237	15594720	-	BB0375	-	pfs protein (pfs-1)
376	 33.16	+1	386159..387337	+	392	15594721	-	BB0376	-	S-adenosylmethionine synthetase
377	 30.59	0	387334..387807	+	157	161511080	-	BB0377	-	S-ribosylhomocysteinase
378	 26.24	0	387818..388480	-	220	15594723	-	BB0378	-	hypothetical protein
379	 27.11	0	388507..388956	-	149	15594724	-	BB0379	-	protein kinase C1 inhibitor (pkcI)
380	 30.70	0	388977..390341	-	454	15594725	-	BB0380	-	Mg2+ transport protein (mgtE)
381	 28.50	0	390392..391819	-	475	15594726	-	BB0381	-	hypothetical protein
382	 32.26	0	391932..392957	-	341	15594727	-	BB0382	-	basic membrane protein B (bmpB)
383	 33.14	+1	393044..394063	-	339	15594728	-	BB0383	-	basic membrane protein A (bmpA)
384	 30.04	0	394105..395166	-	353	15594729	-	BB0384	-	basic membrane protein C (bmpC)
385	 32.13	0	395481..396563	-	360	15594730	-	BB0385	-	basic membrane protein D (bmpD)
386	 32.70	+1	396604..397077	-	157	15594731	-	BB0386	-	30S ribosomal protein S7
387	 38.13	+2	397102..397476	-	124	15594732	rpsL	BB0387	-	30S ribosomal protein S12
388	 33.36	+1	397544..401677	-	1377	15594733	-	BB0388	-	DNA-directed RNA polymerase subunit beta'
389	 34.03	+1	401693..405160	-	1155	15594734	rpoB	BB0389	-	DNA-directed RNA polymerase subunit beta
390	 38.40	+2	405243..405617	-	124	15594735	rplL	BB0390	-	50S ribosomal protein L7/L12
391	 30.18	0	405688..406194	-	168	15594736	rplJ	BB0391	-	50S ribosomal protein L10
392	 30.40	0	406181..406861	-	226	15594737	rplA	BB0392	-	50S ribosomal protein L1
393	 36.81	+2	406861..407292	-	143	15594738	rplK	BB0393	-	50S ribosomal protein L11
394	 32.25	0	407344..407898	-	184	15594739	-	BB0394	-	transcription antitermination factor (nusG)
395	 30.99	0	407922..408092	-	56	15594740	secE	BB0395	-	preprotein translocase subunit SecE
396	 30.00	0	408201..408380	-	59	15594741	rpmG	BB0396	-	50S ribosomal protein L33
397	 27.56	0	408554..409402	-	282	15594742	-	BB0397	-	hypothetical protein
398	 26.07	0	409416..410447	-	343	15594743	-	BB0398	-	hypothetical protein
399	 21.82	-1	410787..411446	+	219	15594744	-	BB0399	-	hypothetical protein
400	 29.27	0	411456..413006	-	516	15594745	-	BB0400	-	hypothetical protein
401	 24.69	0	413113..414315	+	400	15594746	-	BB0401	-	glutamate transporter, putative
402	 33.27	+1	414327..415793	-	488	15594747	-	BB0402	-	prolyl-tRNA synthetase
403	 24.34	-1	415846..416523	-	225	15594748	-	BB0403	-	hypothetical protein
404	 20.62	-2	416689..417105	+	138	15594749	-	BB0404	-	hypothetical protein
405	 35.13	+1	417102..417713	+	203	15594750	-	BB0405	-	hypothetical protein
406	 28.92	0	417724..418335	+	203	15594751	-	BB0406	-	hypothetical protein
407	 29.31	0	418388..419506	-	372	15594752	-	BB0407	-	mannose-6-phosphate isomerase (manA)
408	 35.62	+1	419503..421380	-	625	15594753	-	BB0408	-	PTS system, fructose-specific IIABC component (fruA-1)
409	 27.46	0	421554..422183	+	209	15594754	-	BB0409	-	hypothetical protein
410	 23.33	-1	422180..422299	+	39	15594755	-	BB0410	-	hypothetical protein
411	 25.17	0	422471..423058	+	195	15594756	-	BB0411	-	endonuclease precursor (nucA)
412	 23.59	-1	423055..423834	+	259	15594757	-	BB0412	-	hypothetical protein
413	 24.36	-1	423822..424445	-	207	15594758	-	BB0413	-	hypothetical protein
414	 24.48	-1	424694..425551	+	285	15594759	-	BB0414	-	chemotaxis protein methyltransferase (cheR-2)
415	 29.34	0	425584..426711	+	375	15594760	-	BB0415	-	protein-glutamate methylesterase (cheB-1)
416	 28.48	0	426736..427950	+	404	15594761	-	BB0416	-	pheromone shutdown protein (traB)
417	 28.46	0	427987..428622	+	211	15594762	-	BB0417	-	adenylate kinase (adk)
418	 30.71	0	428646..429674	+	342	15594763	-	BB0418	-	hypothetical protein
419	 30.95	0	429693..430616	-	307	15594764	-	BB0419	-	response regulatory protein (rrp-1)
420	 25.98	0	430619..435103	-	1494	15594765	-	BB0420	-	sensory transduction histidine kinase, putative
421	 26.55	0	441713..442552	-	279	15594766	-	BB0421	-	hydrolase
422	 31.19	0	442688..443248	-	186	15594767	-	BB0422	-	3-methyladenine DNA glycosylase (mag)
423	 35.40	+1	443763..444053	-	96	15594768	-	BB0423	-	hypothetical protein
424	 31.33	0	444150..444299	+	49	15594769	-	BB0424	-	hypothetical protein
425	 23.66	-1	446113..446205	-	30	15594770	-	BB0425	-	hypothetical protein
426	 30.50	0	446327..446890	-	187	15594771	-	BB0426	-	hypothetical protein
427	 31.44	0	446969..447760	-	263	15594772	-	BB0427	-	hypothetical protein
428	 26.73	0	447855..448172	+	105	15594773	-	BB0428	-	hypothetical protein
429	 30.26	0	448202..448591	-	129	15594774	-	BB0429	-	hypothetical protein
430	 24.26	-1	448705..449310	+	201	15594775	-	BB0430	-	proline dipeptidase (pepQ)
431	 27.22	0	449419..450171	+	250	15594776	-	BB0431	-	hypothetical protein
432	 21.99	-1	450174..450887	+	237	15594777	-	BB0432	-	hypothetical protein
433	 20.20	-2	450972..451070	-	32	15594778	-	BB0433	-	hypothetical protein
434	 26.95	0	451139..451921	-	260	15594779	-	BB0434	-	stage 0 sporulation protein J (spo0J)
435	 30.91	0	452040..454472	-	810	15594780	-	BB0435	-	DNA gyrase, subunit A (gyrA)
436	 32.08	0	454484..456403	-	639	15594781	-	BB0436	-	DNA gyrase, subunit B (gyrB)
437	 27.79	0	456576..458036	+	486	15594782	-	BB0437	-	chromosomal replication initiator protein (dnaA)
438	 25.65	0	458277..459434	+	385	15594783	-	BB0438	-	DNA polymerase III, subunit beta (dnaN)
439	 25.67	0	459525..459824	+	99	15594784	-	BB0439	-	hypothetical protein
440	 32.69	+1	459916..460071	+	51	15594785	rpmH	BB0440	-	50S ribosomal protein L34
441	 27.50	0	460052..460411	+	119	15594786	-	BB0441	-	ribonuclease P protein component (rnpA)
442	 27.16	0	460398..462032	+	544	15594787	-	BB0442	-	putative inner membrane protein translocase component YidC
443	 29.77	0	462045..462773	+	242	15594788	-	BB0443	-	spoIIIJ-associtated protein (jag)
444	 31.27	0	462819..463886	+	355	15594789	-	BB0444	-	nucleotide sugar epimerase
445	 32.78	+1	464053..465132	+	359	15594790	-	BB0445	-	fructose-bisphosphate aldolase
446	 28.51	0	465518..467278	-	586	161511079	aspS	BB0446	-	aspartyl-tRNA synthetase
447	 29.82	0	467282..469387	-	701	15594792	-	BB0447	-	Na+/H+ antiporter (napA)
448	 27.17	0	469390..469665	-	91	15594793	-	BB0448	-	phosphocarrier protein HPr (ptsH-1)
449	 24.83	0	469678..469971	-	97	15594794	-	BB0449	-	hypothetical protein
450	 25.40	0	469961..471220	-	419	15594795	-	BB0450	-	RNA polymerase sigma-54 factor (ntrA)
28.42	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.