IslandPath Analysis: Borrelia burgdorferi B31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 28.42   STD DEV: 3.85
Borrelia burgdorferi B31, complete genome - 1..910724
851 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
183	 27.99	0	186554..186946	+	130	15594528	-	BB0183	-	flagellar assembly protein FliW
184	 21.95	-1	186949..187194	+	81	15594529	-	BB0184	-	carbon storage regulator (csrA)
185	 26.15	0	187178..187831	-	217	15594530	-	BB0185	-	hypothetical protein
186	 28.50	0	187824..188237	-	137	15594531	-	BB0186	-	hypothetical protein
187	 27.97	0	188234..188494	-	86	15594532	-	BB0187	-	hypothetical protein
188	 31.03	0	188708..189055	-	115	15594533	rplT	BB0188	-	50S ribosomal protein L20
189	 26.37	0	189076..189276	-	66	15594534	rpmI	BB0189	-	50S ribosomal protein L35
190	 31.73	0	189299..189859	-	186	15594535	infC	BB0190	-	translation initiation factor IF-3
191	 18.75	-2	189949..190044	+	31	15594536	-	BB0191	-	hypothetical protein
192	 22.17	-1	190064..190717	+	217	15594537	-	BB0192	-	hypothetical protein
193	 21.32	-1	190719..191459	+	246	15594538	-	BB0193	-	hypothetical protein
194	 28.02	0	191518..192327	-	269	15594539	-	BB0194	-	hypothetical protein
195	 29.82	0	192324..193463	-	379	15594540	-	BB0195	-	cell division control protein 27, putative
196	 29.61	0	193800..194873	+	357	15594541	prfA	BB0196	-	peptide chain release factor 1
197	 26.71	0	194876..195736	+	286	15594542	-	BB0197	-	protoporphyrinogen oxidase, putative
198	 29.94	0	195693..197696	+	667	15594543	-	BB0198	-	guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (spoT)
199	 21.24	-1	197686..199950	+	754	15594544	-	BB0199	-	hypothetical protein
200	 30.35	0	199965..201035	-	356	15594545	-	BB0200	-	D-alanine--D-alanine ligase (ddlA)
201	 30.39	0	201052..202578	-	508	15594546	-	BB0201	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (murE)
202	 28.73	0	202850..204088	+	412	15594547	-	BB0202	-	hemolysin, putative
203	 28.31	0	204137..205072	+	311	15594548	-	BB0203	-	lambda CII stability-governing protein (hflK)
204	 30.14	0	205073..206044	+	323	15594549	-	BB0204	-	lambda CII stability-governing protein (hflC)
205	 25.86	0	206529..208106	+	525	15594550	-	BB0205	-	hypothetical protein
206	 26.49	0	208084..208653	-	189	15594551	-	BB0206	-	hypothetical protein
207	 28.32	0	208706..209542	+	278	15594552	-	BB0207	-	UTP--glucose-1-phosphate uridylyltransferase (gtaB)
208	 22.28	-1	209529..211274	+	581	15594553	-	BB0208	-	hypothetical protein
209	 28.91	0	211301..212068	+	255	15594554	-	BB0209	-	hypothetical protein
210	 29.88	0	212061..215420	+	1119	15594555	-	BB0210	-	surface-located membrane protein 1 (lmp1)
211	 27.22	0	215427..217259	+	610	15594556	-	BB0211	-	DNA mismatch repair protein (mutL)
212	 18.65	-2	217278..218312	+	344	15594557	-	BB0212	-	hypothetical protein
213	 25.23	0	218425..219078	-	217	15594558	-	BB0213	-	hypothetical protein
214	 32.82	+1	219056..219634	-	192	15594559	-	BB0214	-	translation elongation factor P (efp)
215	 28.71	0	219797..220639	+	280	15594560	-	BB0215	-	phosphate ABC transporter, periplasmic phosphate-binding protein (pstS)
216	 30.14	0	220729..221637	+	302	15594561	-	BB0216	-	phosphate ABC transporter, permease protein (pstC)
217	 28.88	0	222192..223178	+	328	15594562	-	BB0217	-	phosphate ABC transporter, permease protein (pstA)
218	 32.44	+1	223179..223961	+	260	15594563	-	BB0218	-	phosphate ABC transporter, ATP-binding protein (pstB)
219	 35.28	+1	223964..224785	-	273	15594564	-	BB0219	-	gufA protein
220	 32.83	+1	224826..226610	-	594	15594565	-	BB0220	-	alanyl-tRNA synthetase
221	 26.98	0	226610..227836	-	408	15594566	-	BB0221	-	flagellar motor switch protein (fliG-1)
222	 27.68	0	227814..228521	-	235	15594567	-	BB0222	-	glucose-6-phosphate 1-dehydrogenase, putative
223	 23.16	-1	228542..228895	-	117	15594568	-	BB0223	-	hypothetical protein
224	 25.96	0	228864..229148	-	94	15594569	-	BB0224	-	hypothetical protein
225	 28.17	0	229217..230224	+	335	15594570	-	BB0225	-	tRNA-dihydrouridine synthase A
226	 31.22	0	230214..231491	-	425	15594571	-	BB0226	-	seryl-tRNA synthetase
227	 24.07	-1	231621..232322	+	233	15594572	-	BB0227	-	hypothetical protein
228	 27.06	0	232338..235253	+	971	15594573	-	BB0228	-	hypothetical protein
229	 29.67	0	235289..235534	-	81	15594574	rpmE2	BB0229	-	50S ribosomal protein L31 type B
230	 31.98	0	235595..237142	-	515	15594575	rho	BB0230	-	transcription termination factor Rho
231	 28.43	0	237222..237629	-	135	15594576	-	BB0231	-	hypothetical protein
232	 31.80	0	237630..237956	-	108	15594577	-	BB0232	-	hbbU protein
233	 29.07	0	237969..238226	-	85	161511081	rpsT	BB0233	-	30S ribosomal protein S20
234	 20.17	-2	238301..239128	-	275	15594579	-	BB0234	-	hypothetical protein
235	 31.07	0	239144..240250	-	368	15594580	-	BB0235	-	translation-associated GTPase
236	 29.65	0	240283..242289	-	668	15594581	-	BB0236	-	hypothetical protein
237	 30.78	0	242438..244003	+	521	15594582	lnt	BB0237	-	apolipoprotein N-acyltransferase
238	 28.52	0	243943..244731	-	262	15594583	-	BB0238	-	hypothetical protein
239	 28.80	0	244777..245394	-	205	15594584	-	BB0239	-	deoxyguanosine/deoxyadenosine kinase(I) subunit 2 (dck)
240	 34.25	+1	245790..246554	+	254	15594585	-	BB0240	-	glycerol uptake facilitator (glpF)
241	 36.72	+2	246597..248102	+	501	15594586	-	BB0241	-	glycerol kinase (glpK)
242	 21.51	-1	248156..248434	+	92	15594587	-	BB0242	-	hypothetical protein
243	 30.11	0	248506..250089	+	527	15594588	-	BB0243	-	glycerol-3-phosphate dehydrogenase, anaerobic (glpA)
244	 29.49	0	250176..250670	-	164	15594589	-	BB0244	-	hypothetical protein
245	 30.09	0	250657..251211	-	184	15594590	-	BB0245	-	hypothetical protein
246	 31.19	0	251212..252237	-	341	15594591	-	BB0246	-	hypothetical protein
247	 23.60	-1	252434..253039	+	201	15594592	-	BB0247	-	hypothetical protein
248	 27.75	0	253159..254931	+	590	15594593	-	BB0248	-	oligoendopeptidase F (pepF)
249	 28.37	0	254945..255649	+	234	15594594	-	BB0249	-	phosphatidyltransferase
250	 25.04	0	255646..256260	+	204	15594595	-	BB0250	-	dedA protein (dedA)
251	 31.83	0	256463..258985	+	840	15594596	leuS	BB0251	-	leucyl-tRNA synthetase
252	 26.95	0	259000..261303	+	767	15594597	-	BB0252	-	hypothetical protein
253	 32.01	0	261292..263712	-	806	15594598	-	BB0253	-	ATP-dependent protease LA (lon-1)
254	 25.53	0	263988..266114	+	708	15594599	-	BB0254	-	single-stranded-DNA-specific exonuclease (recJ)
255	 28.74	0	266095..267051	+	318	15594600	-	BB0255	-	hypothetical protein
256	 27.62	0	267066..267275	+	69	15594601	rpsU	BB0256	-	30S ribosomal protein S21
257	 28.85	0	267313..269676	-	787	15594602	-	BB0257	-	cell division protein, putative
258	 24.97	0	269673..270473	-	266	15594603	uppP	BB0258	-	undecaprenyl pyrophosphate phosphatase
259	 26.65	0	270488..272701	-	737	15594604	-	BB0259	-	hypothetical protein
260	 25.64	0	272634..273647	-	337	15594605	-	BB0260	-	hypothetical protein
261	 24.95	0	273854..275236	+	460	15594606	-	BB0261	-	hypothetical protein
262	 27.19	0	275243..276496	-	417	15594607	-	BB0262	-	hypothetical protein
263	 25.25	0	276558..277064	+	168	15594608	-	BB0263	-	signal peptidase I (lepB-3)
264	 30.62	0	277090..278565	-	491	15594609	-	BB0264	-	heat shock protein 70 (dnaK-1)
265	 25.29	0	278537..279058	-	173	15594610	-	BB0265	-	hypothetical protein
266	 25.89	0	279078..279386	-	102	15594611	-	BB0266	-	hypothetical protein
267	 31.97	0	279407..281311	-	634	15594612	-	BB0267	-	hypothetical protein
268	 27.29	0	281314..281793	-	159	15594613	-	BB0268	-	hypothetical protein
269	 30.97	0	281800..282687	-	295	15594614	-	BB0269	-	ATP-binding protein (ylxH-1)
270	 29.13	0	282699..283865	-	388	15594615	-	BB0270	-	flagellar biosynthesis regulator FlhF
271	 32.86	+1	283869..285962	-	697	15594616	flhA	BB0271	-	flagellar biosynthesis protein FlhA
272	 30.74	0	285971..287089	-	372	15594617	flhB	BB0272	-	flagellar biosynthesis protein FlhB
273	 25.06	0	287089..287898	-	269	15594618	-	BB0273	-	flagellar biosynthesis protein (fliR)
274	 26.52	0	287910..288173	-	87	15594619	-	BB0274	-	flagellar biosynthesis protein (fliQ)
275	 29.93	0	288182..288946	-	254	15594620	fliP	BB0275	-	flagellar biosynthesis protein FliP
276	 25.52	0	288957..289583	-	208	15594621	-	BB0276	-	flagellar biosynthesis protein FliZ
277	 35.67	+1	289576..289917	-	113	15594622	-	BB0277	-	flagellar motor switch protein (fliN)
278	 33.52	+1	289963..291021	-	352	15594623	fliM	BB0278	-	flagellar motor switch protein FliM
279	 30.35	0	291059..291595	-	178	15594624	fliL	BB0279	-	flagellar basal body-associated protein FliL
280	 32.18	0	291644..292426	-	260	15594625	motB	BB0280	-	flagellar motor protein MotB
281	 34.48	+1	292426..293208	-	260	15594626	-	BB0281	-	flagellar motor rotation protein A (motA)
282	 29.78	0	293205..293429	-	74	15594627	-	BB0282	-	flagellar protein (flbD)
28.42	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.