IslandPath Analysis: Borrelia burgdorferi B31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 28.42   STD DEV: 3.85
Borrelia burgdorferi B31, complete genome - 1..910724
851 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
111	 31.65	0	109675..111042	-	455	15594457	-	BB0111	-	replicative DNA helicase (dnaB)
112	 27.78	0	111046..111567	-	173	15594458	rplI	BB0112	-	50S ribosomal protein L9
113	 29.21	0	111585..111875	-	96	15594459	rpsR	BB0113	-	30S ribosomal protein S18
114	 30.22	0	111889..112338	-	149	15594460	-	BB0114	-	single-stranded DNA-binding protein (ssb)
115	 29.29	0	112350..112769	-	139	15594461	rpsF	BB0115	-	30S ribosomal protein S6
116	 32.17	0	112909..114633	-	574	15594462	-	BB0116	-	PTS system, maltose and glucose-specific IIABC component (malX)
117	 28.92	0	114807..115508	+	233	15594463	-	BB0117	-	hemolysin III (yplQ)
118	 27.17	0	115505..116818	-	437	15594464	-	BB0118	-	zinc protease, putative
119	 29.29	0	116825..117763	-	312	15595197	cdsA	BB0119	-	phosphatidate cytidylyltransferase
120	 28.72	0	117678..118370	-	230	15594465	-	BB0120	-	hypothetical protein
121	 28.65	0	118375..118929	-	184	15594466	-	BB0121	-	ribosome releasing factor (frr)
122	 31.07	0	118964..119803	-	279	15594467	tsf	BB0122	-	elongation factor Ts
123	 31.42	0	119807..120589	-	260	15594468	rpsB	BB0123	-	30S ribosomal protein S2
124	 22.58	-1	120804..121082	-	92	15594469	-	BB0124	-	hypothetical protein
125	 29.88	0	121101..121823	-	240	15594470	-	BB0125	-	hypothetical protein
126	 26.47	0	121880..122491	-	203	15594471	-	BB0126	-	hypothetical protein
127	 30.93	0	122491..124152	-	553	15594472	rpsA	BB0127	-	30S ribosomal protein S1
128	 29.28	0	124149..124814	-	221	15594473	-	BB0128	-	cytidylate kinase (cmk-1)
129	 26.80	0	124798..125547	-	249	15594474	-	BB0129	-	hypothetical protein
130	 24.09	-1	125534..126301	-	255	15594475	-	BB0130	-	hypothetical protein
131	 36.98	+2	126316..127413	-	365	15594476	recA	BB0131	-	recombinase A
132	 28.12	0	127427..130132	-	901	15594477	-	BB0132	-	fused transcript cleavage factor/uncharacterized domain-containing protein
133	 29.42	0	130170..131114	-	314	15594478	-	BB0133	-	hypothetical protein
134	 26.54	0	131277..132425	+	382	15594479	-	BB0134	-	hypothetical protein
135	 28.17	0	132472..133845	-	457	15594480	hisS	BB0135	-	histidyl-tRNA synthetase
136	 28.73	0	133975..135864	+	629	15594481	-	BB0136	-	penicillin-binding protein (pbp-1)
137	 30.85	0	135874..137766	-	630	15594482	-	BB0137	-	long-chain-fatty-acid CoA ligase
138	 16.19	-2	137880..138089	-	69	15594483	-	BB0138	-	hypothetical protein
139	 27.95	0	138434..138823	-	129	15594484	-	BB0139	-	hypothetical protein
140	 30.95	0	138850..141960	-	1036	15594485	-	BB0140	-	acriflavine resistance protein (acrB)
141	 30.93	0	141979..142935	-	318	15594486	-	BB0141	-	membrane fusion protein (mtrC)
142	 27.29	0	142944..144266	-	440	15594487	-	BB0142	-	hypothetical protein
143	 21.99	-1	144307..144597	+	96	15594488	-	BB0143	-	alpha-hemolysin (hlyA)
144	 32.88	+1	144586..145458	-	290	15594489	-	BB0144	-	glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein (proX)
145	 28.00	0	145471..146370	-	299	15594490	-	BB0145	-	glycine betaine, L-proline ABC transporter, permease protein (proW)
146	 27.88	0	146377..147495	-	372	15594491	-	BB0146	-	glycine betaine, L-proline ABC transporter, ATP-binding protein (proV)
147	 36.70	+2	147649..148659	-	336	15594492	-	BB0147	-	flagellin
148	 18.75	-2	148710..148805	+	31	15594493	-	BB0148	-	hypothetical protein
149	 29.83	0	148786..150783	-	665	15594494	fliD	BB0149	-	flagellar hook-associated protein FliD
150	 13.98	-2	150805..150897	-	30	15594495	-	BB0150	-	hypothetical protein
151	 34.08	+1	150974..152179	+	401	15594496	-	BB0151	-	N-acetylglucosamine-6-phosphate deacetylase (nagA)
152	 31.10	0	152206..153012	+	268	15594497	nagB	BB0152	-	glucosamine-6-phosphate deaminase
153	 31.01	0	153075..153719	-	214	15594498	-	BB0153	-	superoxide dismutase (sodA)
154	 33.15	+1	153701..156400	-	899	15594499	-	BB0154	-	preprotein translocase subunit SecA
155	 25.42	0	156462..157598	+	378	15594500	-	BB0155	-	hypothetical protein
156	 22.53	-1	157627..158061	+	144	15594501	-	BB0156	-	hypothetical protein
157	 24.46	-1	158058..158474	+	138	15594502	-	BB0157	-	hypothetical protein
158	 26.92	0	158628..159344	+	238	15594503	-	BB0158	-	antigen, S2, putative
159	 25.78	0	159368..160042	+	224	15594504	-	BB0159	-	hypothetical protein
160	 23.95	-1	160090..161208	+	372	15594505	-	BB0160	-	alanine racemase (alr)
161	 25.65	0	161200..162864	-	554	15594506	-	BB0161	-	hypothetical protein
162	 29.76	0	162878..163045	+	55	15594507	-	BB0162	-	hypothetical protein
163	 26.76	0	163072..164820	-	582	15594508	-	BB0163	-	hypothetical protein
164	 26.33	0	164901..165914	-	337	15594509	-	BB0164	-	Na+/Ca+ exchange protein, putative
165	 28.35	0	165915..167759	-	614	15594510	-	BB0165	-	hypothetical protein
166	 28.40	0	167879..169399	-	506	15594511	-	BB0166	-	4-alpha-glucanotransferase (malQ)
167	 27.01	0	169539..170708	+	389	15594512	-	BB0167	-	outer membrane protein (tpn50)
168	 28.84	0	170720..171097	-	125	15594513	-	BB0168	-	dnaK suppressor, putative
169	 31.14	0	171212..171484	+	90	15594514	infA	BB0169	-	translation initiation factor IF-1
170	 26.79	0	171532..173580	-	682	15594515	-	BB0170	-	hypothetical protein
171	 29.42	0	173529..174116	-	195	15594516	-	BB0171	-	hypothetical protein
172	 26.03	0	174098..175138	-	346	15594517	-	BB0172	-	hypothetical protein
173	 28.75	0	175081..176106	-	341	15594518	-	BB0173	-	hypothetical protein
174	 26.05	0	176069..176974	-	301	15594519	-	BB0174	-	hypothetical protein
175	 29.00	0	176978..177853	-	291	15594520	-	BB0175	-	hypothetical protein
176	 36.39	+2	177868..178881	-	337	15594521	-	BB0176	-	methanol dehydrogenase regulator (moxR)
177	 24.08	-1	178917..179543	-	208	15594522	-	BB0177	-	glucose inhibited division protein B (gidB)
178	 33.97	+1	179540..181423	-	627	15594523	-	BB0178	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
179	 29.46	0	181408..182802	-	464	15594524	trmE	BB0179	-	tRNA modification GTPase TrmE
180	 26.06	0	182886..183380	+	164	15594525	-	BB0180	-	flagellar protein, putative
181	 31.69	0	183392..185275	+	627	15594526	flgK	BB0181	-	flagellar hook-associated protein FlgK
182	 32.94	+1	185278..186552	+	424	15594527	-	BB0182	-	flagellar hook-associated protein FlgL
183	 27.99	0	186554..186946	+	130	15594528	-	BB0183	-	flagellar assembly protein FliW
184	 21.95	-1	186949..187194	+	81	15594529	-	BB0184	-	carbon storage regulator (csrA)
185	 26.15	0	187178..187831	-	217	15594530	-	BB0185	-	hypothetical protein
186	 28.50	0	187824..188237	-	137	15594531	-	BB0186	-	hypothetical protein
187	 27.97	0	188234..188494	-	86	15594532	-	BB0187	-	hypothetical protein
188	 31.03	0	188708..189055	-	115	15594533	rplT	BB0188	-	50S ribosomal protein L20
189	 26.37	0	189076..189276	-	66	15594534	rpmI	BB0189	-	50S ribosomal protein L35
190	 31.73	0	189299..189859	-	186	15594535	infC	BB0190	-	translation initiation factor IF-3
191	 18.75	-2	189949..190044	+	31	15594536	-	BB0191	-	hypothetical protein
192	 22.17	-1	190064..190717	+	217	15594537	-	BB0192	-	hypothetical protein
193	 21.32	-1	190719..191459	+	246	15594538	-	BB0193	-	hypothetical protein
194	 28.02	0	191518..192327	-	269	15594539	-	BB0194	-	hypothetical protein
195	 29.82	0	192324..193463	-	379	15594540	-	BB0195	-	cell division control protein 27, putative
196	 29.61	0	193800..194873	+	357	15594541	prfA	BB0196	-	peptide chain release factor 1
197	 26.71	0	194876..195736	+	286	15594542	-	BB0197	-	protoporphyrinogen oxidase, putative
198	 29.94	0	195693..197696	+	667	15594543	-	BB0198	-	guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (spoT)
199	 21.24	-1	197686..199950	+	754	15594544	-	BB0199	-	hypothetical protein
200	 30.35	0	199965..201035	-	356	15594545	-	BB0200	-	D-alanine--D-alanine ligase (ddlA)
201	 30.39	0	201052..202578	-	508	15594546	-	BB0201	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (murE)
202	 28.73	0	202850..204088	+	412	15594547	-	BB0202	-	hemolysin, putative
203	 28.31	0	204137..205072	+	311	15594548	-	BB0203	-	lambda CII stability-governing protein (hflK)
204	 30.14	0	205073..206044	+	323	15594549	-	BB0204	-	lambda CII stability-governing protein (hflC)
205	 25.86	0	206529..208106	+	525	15594550	-	BB0205	-	hypothetical protein
206	 26.49	0	208084..208653	-	189	15594551	-	BB0206	-	hypothetical protein
207	 28.32	0	208706..209542	+	278	15594552	-	BB0207	-	UTP--glucose-1-phosphate uridylyltransferase (gtaB)
208	 22.28	-1	209529..211274	+	581	15594553	-	BB0208	-	hypothetical protein
209	 28.91	0	211301..212068	+	255	15594554	-	BB0209	-	hypothetical protein
210	 29.88	0	212061..215420	+	1119	15594555	-	BB0210	-	surface-located membrane protein 1 (lmp1)
28.42	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.