IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
865	 40.77	+1	1051598..1053319	+	573	118476643	-	BALH_0919	-	glycerol-3-phosphate dehydrogenase
866	 27.66	-2	1054091..1054513	+	140	118476644	-	BALH_0920	-	hypothetical protein
867	 36.07	0	1054773..1055138	-	121	118476645	-	BALH_0921	-	hypothetical protein
868	 33.52	0	1055462..1055995	+	177	118476646	-	BALH_0922	-	RNA polymerase factor sigma C
869	 36.13	0	1056415..1057665	+	416	118476647	-	BALH_0923	-	cell cycle protein FtsW
870	 39.92	+1	1057723..1058208	-	161	118476648	-	BALH_0924	-	MarR family transcriptional regulator
871	 42.13	+1	1058612..1058827	-	71	118476649	-	BALH_0925	-	hypothetical protein
872	 39.37	+1	1059020..1060411	+	463	118476650	tetB	BALH_0927	-	major facilitator family transporter metal-tetracycline/H(+) antiporter
873	 39.26	+1	1060434..1061885	+	483	118476651	-	BALH_0929	-	permease, general substrate transporter
874	 39.94	+1	1062442..1064772	-	776	118476652	-	BALH_0930	-	ATP-dependent DNA helicase UvrD
875	 34.38	0	1065232..1066095	-	287	118476653	prsA	BALH_0931	-	peptidylprolyl isomerase
876	 35.63	0	1066822..1067169	+	115	118476654	-	BALH_0932	-	hypothetical protein
877	 35.48	0	1067175..1067732	-	185	118476655	-	BALH_0933	-	transcriptional regulator Hpr
878	 36.18	0	1068031..1068522	-	163	118476656	-	BALH_0934	-	hypothetical protein
879	 35.94	0	1068579..1069076	-	165	118476657	-	BALH_0935	-	HIT family protein
880	 37.63	0	1069576..1070319	+	247	118476658	ecsA	BALH_0936	-	ABC transporter, ATP-binding protein
881	 37.05	0	1070312..1071523	+	403	118476659	ecsB	BALH_0937	-	ABC transporter, permease component
882	 40.82	+1	1071537..1072244	+	235	118476660	ecsC	BALH_0938	-	ecsC-like protein
883	 36.20	0	1072560..1073153	+	197	118476661	-	BALH_0939	-	TetR family transcriptional regulator
884	 37.37	0	1073863..1075323	+	486	118476662	-	BALH_0940	-	hypothetical protein
885	 37.83	0	1075873..1076139	+	88	118476663	-	BALH_0941	-	hypothetical protein
886	 36.69	0	1076926..1077462	+	178	118476664	-	BALH_0942	-	TetR family transcriptional regulator
887	 33.62	0	1077788..1083427	+	1879	118476665	-	BALH_0943	-	collagen adhesion protein
888	 32.22	-1	1084210..1085106	+	298	118476666	-	BALH_0944	-	hypothetical protein
889	 34.27	0	1085333..1085653	+	106	118476667	-	BALH_0945	-	hypothetical protein
890	 37.74	0	1085729..1086205	+	158	118476668	-	BALH_0946	-	hypothetical protein
891	 38.59	0	1086189..1087616	+	475	118476669	-	BALH_0947	-	hypothetical protein
892	 40.08	+1	1087782..1088285	-	167	118476670	-	BALH_0948	-	hypothetical protein
893	 38.99	0	1088302..1090530	+	742	118476671	pbpF	BALH_0949	-	penicillin-binding protein 1
894	 39.87	+1	1090686..1091756	+	356	118476672	hemE	BALH_0950	-	uroporphyrinogen decarboxylase
895	 37.39	0	1091771..1092706	+	311	118476673	hemH	BALH_0951	-	ferrochelatase
896	 42.33	+1	1092726..1094147	+	473	118476674	-	BALH_0952	-	protoporphyrinogen oxidase
897	 35.89	0	1094187..1095557	-	456	118476675	-	BALH_0953	-	hypothetical protein
898	 37.43	0	1095781..1098147	+	788	118476676	-	BALH_0954	-	endonuclease/exonuclease/phosphatase
899	 33.83	0	1098566..1099378	+	270	118476677	pip	BALH_0955	-	proline iminopeptidase
900	 35.62	0	1099439..1100311	-	290	118476678	-	BALH_0956	-	hypothetical protein
901	 34.78	0	1100664..1101077	+	137	118476679	-	BALH_0957	-	penicillinase repressor
902	 32.87	0	1101080..1103029	+	649	118476680	-	BALH_0958	-	methicillin resistance protein
903	 31.66	-1	1103279..1103875	+	198	118476681	-	BALH_0959	-	TetR family transcriptional regulator
904	 38.08	0	1104400..1107135	+	911	118476682	-	BALH_0960	-	hypothetical protein
905	 30.42	-1	1107319..1108038	-	239	118476683	-	BALH_0961	-	hypothetical protein
906	 25.63	-2	1109332..1110525	-	397	118476684	-	BALH_0962	-	hypothetical protein
907	 35.37	0	1110590..1111327	-	245	118476685	-	BALH_0963	-	hypothetical protein
908	 34.93	0	1112049..1112549	-	166	118476686	-	BALH_0964	-	hypothetical protein
909	 36.94	0	1112642..1113583	-	313	118476687	-	BALH_0965	-	DeoR family transcriptional regulator
910	 38.41	0	1113712..1114794	+	360	118476688	-	BALH_0966	-	LacI family transcription regulator
911	 40.00	+1	1115142..1115876	+	244	118476689	-	BALH_0967	-	metal-dependant hydrolase
912	 35.96	0	1115886..1116875	+	329	118476690	-	BALH_0968	-	lipoate-protein ligase
913	 34.27	0	1117130..1117558	+	142	118476691	-	BALH_0969	-	lipoprotein
914	 40.31	+1	1117720..1119252	+	510	118476692	fadD	BALH_0970	-	acyl-CoA synthetase
915	 34.97	0	1119700..1120740	+	346	118476693	-	BALH_0971	-	iron transport-associated domain-containing protein
916	 35.41	0	1121105..1121683	+	192	118476694	wapA	BALH_0972	-	wall-associated protein
917	 40.62	+1	1121796..1122083	+	95	118476695	-	BALH_0973	-	cell wall-associated protein
918	 32.26	-1	1122337..1122801	+	154	118476696	-	BALH_0975	-	hypothetical protein
919	 31.67	-1	1123117..1123719	+	200	118476697	-	BALH_0976	-	hypothetical protein
920	 30.98	-1	1123980..1124828	+	282	118476698	-	BALH_0977	-	hypothetical protein
921	 32.55	0	1124893..1125405	+	170	118476699	-	BALH_0978	-	hypothetical protein
922	 35.59	0	1125729..1126259	+	176	118476700	-	BALH_0979	-	hypothetical protein
923	 30.77	-1	1126505..1127050	-	181	118476701	-	BALH_0980	-	TetR family transcriptional regulator
924	 40.97	+1	1127207..1128136	+	309	118476702	-	BALH_0981	-	dienelactone hydrolase family protein
925	 39.57	+1	1128283..1129389	+	368	118476703	-	BALH_0982	-	phosphoesterase
926	 30.23	-1	1129431..1129784	-	117	118476704	-	BALH_0983	-	hypothetical protein
927	 34.87	0	1130143..1131120	+	325	118476705	ydhJ	BALH_0984	-	HD domain-containing protein
928	 35.99	0	1131159..1132286	-	375	118476706	-	BALH_0985	-	sigma-M negative effector
929	 38.32	0	1132906..1133808	+	300	118476707	-	BALH_0986	-	AraC family transcriptional regulator
930	 34.19	0	1134055..1135797	-	580	118476708	mrsK	BALH_0987	-	sensor histidine kinase
931	 37.59	0	1135807..1136511	-	234	118476709	mrsR	BALH_0988	-	response regulator
932	 32.51	0	1136647..1137501	+	284	118476710	-	BALH_0989	-	CAAX amino terminal protease family protein
933	 36.37	0	1138122..1139438	+	438	118476711	-	BALH_0990	-	peptidase
934	 33.55	0	1139534..1140442	+	302	118476712	-	BALH_0991	-	DMT family permease
935	 37.20	0	1140520..1141191	+	223	118476713	-	BALH_0992	-	S-layer protein
936	 34.30	0	1141435..1142259	+	274	118476714	-	BALH_0993	-	S-layer protein
937	 38.36	0	1142719..1143375	+	218	118476715	-	BALH_0994	-	S-layer protein
938	 38.24	0	1143561..1145150	+	529	118476716	-	BALH_0995	-	malate synthase
939	 42.89	+2	1145165..1146451	+	428	118476717	-	BALH_0996	-	isocitrate lyase
940	 35.62	0	1146625..1147455	-	276	118476718	-	BALH_0997	-	trifolitoxin immunity protein
941	 38.24	0	1147765..1147968	+	67	118476719	cspA	BALH_0998	-	cold-shock DNA-binding protein family protein
942	 32.59	0	1148156..1148425	-	89	118476720	-	BALH_0999	-	hypothetical protein
943	 30.11	-1	1148654..1148839	-	61	118476721	-	BALH_1000	-	hypothetical protein
944	 33.16	0	1149121..1149702	+	193	118476722	comK	BALH_1001	-	competence transcription factor
945	 37.37	0	1149976..1150569	+	197	118476723	-	BALH_1003	-	hypothetical protein
946	 35.82	0	1150626..1151189	+	187	118476724	-	BALH_1004	-	signal peptidase I
947	 39.70	+1	1151306..1154821	+	1171	118476725	-	BALH_1005	-	DNA helicase/exodeoxyribonuclease V, subunit B
948	 39.69	+1	1154818..1158543	+	1241	118476726	-	BALH_1006	-	DNA helicase/exodeoxyribonuclease V, subunit A
949	 40.14	+1	1158550..1158843	+	97	118476727	-	BALH_1007	-	hypothetical protein
950	 39.56	+1	1158881..1159105	-	74	118476728	gerPF	BALH_1008	-	spore germination protein PF
951	 33.85	0	1159139..1159525	-	128	118476729	-	BALH_1009	-	spore germination protein PE
952	 40.51	+1	1159541..1159735	-	64	118476730	-	BALH_1010	-	spore germination protein PD
953	 33.66	0	1159742..1160356	-	204	118476731	-	BALH_1011	-	spore germination protein PC
954	 40.26	+1	1160645..1160875	-	76	118476732	-	BALH_1012	-	spore germination protein PA
955	 37.95	0	1160963..1161157	-	64	118476733	-	BALH_1013	-	stage 0 sporulation regulatory protein
956	 36.52	0	1161381..1162289	+	302	118476734	-	BALH_1014	-	fumarylacetoacetate hydrolase family protein
957	 40.39	+1	1162715..1163905	-	396	118476735	rocD	BALH_1015	-	ornithine--oxo-acid transaminase
958	 34.41	0	1164480..1165034	-	184	118476736	-	BALH_1016	-	hypothetical protein
959	 38.18	0	1165264..1167120	+	618	118476737	-	BALH_1017	-	asparagine synthetase, glutamine-hydrolyzing
960	 36.56	0	1167309..1168268	+	319	118476738	-	BALH_1018	-	ferrochelatase
961	 39.54	+1	1168328..1169794	+	488	118476739	-	BALH_1019	-	catalase
962	 43.80	+2	1170069..1171301	-	410	118476740	-	BALH_1020	-	ammonium transporter
963	 33.41	0	1171460..1172815	+	451	118476741	-	BALH_1021	-	alpha-amylase family protein
964	 23.62	-2	1173077..1173961	+	294	118476742	-	BALH_1022	-	transcriptional regulator
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.