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IslandPath Analysis: Bacillus thuringiensis str. Al Hakam

Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).

A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36

Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
43	 37.32	0	52548..53501	+	317	118475821	prs	BALH_0045	-	ribose-phosphate pyrophosphokinase
44	 34.44	0	53502..54134	+	210	118475822	spoVC	BALH_0046	-	peptidyl-tRNA hydrolase
45	 32.89	0	54205..54429	+	74	118475823	-	BALH_0047	-	hypothetical protein
46	 35.62	0	54442..58065	+	1207	118475824	mfd	BALH_0048	-	transcription-repair coupling factor
47	 36.31	0	58201..58737	+	178	118475825	spoVT	BALH_0049	-	AbrB family transcriptional regulator
48	 35.08	0	58968..60569	+	533	118475826	spoVB	BALH_0051	-	stage V sporulation protein B
49	 37.10	0	60582..62042	+	486	118475827	mazG	BALH_0053	-	fused tetrapyrrole methylase domain/nucleotide pyrophosphohydrolase domain-containing protein
50	 34.27	0	62012..62332	+	106	118475828	hslR	BALH_0054	-	heat shock protein 15
51	 33.94	0	62373..62699	+	108	118475829	-	BALH_0055	-	hypothetical protein
52	 32.42	0	62696..63349	+	217	118475830	-	BALH_0056	-	hypothetical protein
53	 34.84	0	63307..63705	+	132	118475831	divIC	BALH_0057	-	cell division protein
54	 42.44	+2	63793..64275	+	160	118475832	-	BALH_0058	-	hypothetical protein
55	 36.97	0	64854..67325	+	823	118475833	spoIIE	BALH_0060	-	serine/threonine specific protein phosphatase
56	 36.52	0	67547..68989	+	480	118475834	mesJ	BALH_0061	-	cell cycle protein
57	 34.81	0	68986..69528	+	180	118475835	hpt	BALH_0062	-	hypoxanthine phosphoribosyltransferase
58	 40.17	+1	69614..71515	+	633	118475836	ftsH	BALH_0063	-	FtsH-2 peptidase
59	 38.02	0	71740..72528	+	262	118475837	-	BALH_0064	-	pantothenate kinase
60	 39.73	+1	72535..73410	+	291	118475838	hslO	BALH_0065	-	Hsp33-like chaperonin
61	 39.92	+1	73497..74438	+	313	118475839	cysK	BALH_0066	-	cysteine synthase
62	 38.39	0	74614..76056	+	480	118475840	pabB	BALH_0067	-	aminodeoxychorismate synthase, subunit I
63	 40.37	+1	76053..76649	+	198	118475841	pabA	BALH_0068	-	para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II
64	 35.40	0	76643..77515	+	290	118475842	pabC	BALH_0069	-	4-amino-4-deoxychorismate lyase
65	 39.37	+1	77457..78350	+	297	118475843	folP	BALH_0070	-	dihydropteroate synthase
66	 36.36	0	78351..78713	+	120	118475844	folB	BALH_0071	-	dihydroneopterin aldolase
67	 34.11	0	78710..79225	+	171	118475845	folK	BALH_0072	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase
68	 39.22	+1	79177..79380	+	67	118475846	-	BALH_0073	-	transcriptional regulator
69	 39.31	+1	79383..80402	+	339	118475847	-	BALH_0074	-	NifR3 family TIM-barrel protein
70	 36.80	0	80562..82061	+	499	118475848	lysS	BALH_0075	-	lysyl-tRNA synthetase
71	 33.33	0	93139..93600	+	153	118475849	ctsR	BALH_0078	-	transcriptional regulator
72	 36.01	0	93762..94322	+	186	118475850	-	BALH_0079	-	nucleotide excision repair protein
73	 34.87	0	94285..95391	+	368	118475851	karG	BALH_0080	-	ATP:guanido phosphotransferase
74	 39.08	+1	95414..97849	+	811	118475852	clpC	BALH_0081	-	negative regulator of genetic competence clpC/mecB
75	 39.43	+1	97946..99322	+	458	118475853	radA	BALH_0082	-	DNA repair protein RadA
76	 37.34	0	99326..100399	+	357	118475854	-	BALH_0083	-	DNA integrity scanning protein DisA
77	 34.86	0	100560..101669	+	369	118475855	-	BALH_0084	-	PilT domain-containing protein
78	 39.21	+1	101686..102366	+	226	118475856	ispD	BALH_0085	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
79	 37.74	0	102481..102957	+	158	118475857	ispF	BALH_0086	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
80	 37.16	0	103014..104504	+	496	118475858	gltX	BALH_0087	-	glutamyl-tRNA synthetase
81	 37.54	0	104935..105600	+	221	118475859	cysE	BALH_0088	-	serine O-acetyltransferase
82	 36.77	0	105581..106978	+	465	118475860	cysS	BALH_0089	-	cysteinyl-tRNA synthetase
83	 38.03	0	106963..107388	+	141	118475861	-	BALH_0090	-	hypothetical protein
84	 37.37	0	107385..108128	+	247	118475862	-	BALH_0091	-	tRNA/rRNA methyltransferase
85	 38.21	0	108132..108644	+	170	118475863	-	BALH_0092	-	hypothetical protein
86	 36.07	0	108712..109368	+	218	118475864	sigH	BALH_0093	-	RNA polymerase factor sigma-70
87	 37.45	0	109990..110523	+	177	118475865	nusG	BALH_0094	-	transcription antitermination protein NusG
88	 43.22	+2	110682..111116	+	144	118475866	rplK	BALH_0095	-	50S ribosomal protein L11
89	 41.15	+1	111207..111986	+	259	118475867	rplA	BALH_0096	-	50S ribosomal protein L1
90	 40.59	+1	112141..112719	+	192	118475868	rplJ	BALH_0097	-	50S ribosomal protein L10
91	 39.17	+1	112787..113146	+	119	118475869	rplL	BALH_0098	-	50S ribosomal protein L7/L12
92	 38.16	0	113181..113822	+	213	118475870	-	BALH_0099	-	16S rRNA m(2)G 1207 methyltransferase
93	 41.83	+1	114107..117649	+	1180	118475871	rpoB	BALH_0100	-	DNA-directed RNA polymerase subunit beta
94	 40.39	+1	117687..121298	+	1203	118475872	rpoC	BALH_0101	-	DNA-directed RNA polymerase subunit beta'
95	 36.88	0	121379..121660	+	93	118475873	-	BALH_0102	-	hypothetical protein
96	 40.43	+1	121775..122197	+	140	162382788	rpsL	BALH_0103	-	30S ribosomal protein S12
97	 42.46	+2	122227..122697	+	156	118475875	rpsG	BALH_0104	-	30S ribosomal protein S7
98	 42.52	+2	122884..124983	+	699	118475876	fusA	BALH_0105	-	elongation factor G
99	 43.94	+2	125101..126288	+	395	118475877	tuf	BALH_0106	-	elongation factor Tu
100	 39.16	+1	126687..126995	+	102	118475878	rpsJ	BALH_0107	-	30S ribosomal protein S10
101	 42.65	+2	127030..127662	+	210	118475879	rplC	BALH_0108	-	50S ribosomal protein L3
102	 41.99	+1	127688..128311	+	207	118475880	rplD	BALH_0109	-	50S ribosomal protein L4
103	 39.86	+1	128311..128601	+	96	118475881	rplW	BALH_0110	-	50S ribosomal protein L23
104	 42.48	+2	128630..129460	+	276	118475882	rplB	BALH_0111	-	50S ribosomal protein L2
105	 39.43	+1	129521..129799	+	92	118475883	rpsS	BALH_0112	-	30S ribosomal protein S19
106	 42.50	+2	129799..130158	+	119	118475884	rplV	BALH_0113	-	50S ribosomal protein L22
107	 40.91	+1	130162..130821	+	219	118475885	rpsC	BALH_0114	-	30S ribosomal protein S3
108	 42.13	+1	130769..131257	+	162	118475886	rplP	BALH_0115	-	50S ribosomal protein L16
109	 36.44	0	131223..131447	+	74	118475887	rpmC	BALH_0116	-	50S ribosomal protein L29
110	 39.02	0	131468..131731	+	87	118475888	rpsQ	BALH_0117	-	30S ribosomal protein S17
111	 42.28	+1	131775..132143	+	122	118475889	rplN	BALH_0118	-	50S ribosomal protein L14
112	 36.01	0	132158..132493	+	111	118475890	rplX	BALH_0119	-	50S ribosomal protein L24
113	 39.26	+1	132520..133059	+	179	118475891	rplE	BALH_0120	-	50S ribosomal protein L5
114	 38.71	0	133093..133278	+	61	118475892	rpsN	BALH_0121	-	30S ribosomal protein S14
115	 40.00	+1	133272..133706	+	144	118475893	rpsH	BALH_0122	-	30S ribosomal protein S8
116	 41.30	+1	133739..134278	+	179	118475894	rplF	BALH_0123	-	50S ribosomal protein L6
117	 41.13	+1	134301..134672	+	123	118475895	rplR	BALH_0124	-	50S ribosomal protein L18
118	 43.45	+2	134691..135194	+	167	118475896	rpsE	BALH_0125	-	30S ribosomal protein S5
119	 37.70	0	135208..135390	+	60	118475897	rpmD	BALH_0126	-	50S ribosomal protein L30
120	 42.18	+1	135424..135864	+	146	118475898	rplO	BALH_0127	-	50S ribosomal protein L15
121	 39.63	+1	135864..137165	+	433	118475899	secY	BALH_0128	-	preprotein translocase subunit SecY
122	 39.78	+1	137222..137872	+	216	118475900	adk	BALH_0129	-	adenylate kinase
123	 42.97	+2	137872..138618	+	248	118475901	map	BALH_0130	-	methionine aminopeptidase
124	 37.44	0	138687..138905	+	72	118475902	infA	BALH_0131	-	translation initiation factor IF-1
125	 41.80	+1	139076..139441	+	121	118475903	rpsM	BALH_0132	-	30S ribosomal protein S13
126	 43.08	+2	139466..139855	+	129	118475904	rpsK	BALH_0133	-	30S ribosomal protein S11
127	 38.94	0	140036..140980	+	314	118475905	rpoA	BALH_0134	-	DNA-directed RNA polymerase subunit alpha
128	 44.35	+2	141016..141378	+	120	118475906	rplQ	BALH_0135	-	50S ribosomal protein L17
129	 36.77	0	141422..142324	+	300	118475907	cbiO	BALH_0136	-	cobalt transporter ATP-binding subunit
130	 40.82	+1	142300..143181	+	293	118475908	cbiO	BALH_0137	-	cobalt transporter ATP-binding subunit
131	 35.72	0	143169..143963	+	264	118475909	cbiQ	BALH_0138	-	cobalt ABC transporter, permease component
132	 36.73	0	143927..144721	+	264	118475910	truA	BALH_0140	-	tRNA pseudouridine synthase A
133	 39.73	+1	144874..145311	+	145	118475911	rplM	BALH_0141	-	50S ribosomal protein L13
134	 44.02	+2	145333..145725	+	130	118475912	rpsI	BALH_0142	-	30S ribosomal protein S9
135	 35.71	0	146383..147096	+	237	118475913	cwlD	BALH_0143	-	N-acetylmuramoyl-L-alanine amidase
136	 39.24	+1	147208..148308	+	366	118475914	-	BALH_0144	-	iron-sulfur cluster assembly/repair protein ApbC
137	 35.76	0	148365..148982	-	205	118475915	gerD	BALH_0145	-	spore germination protein
138	 36.27	0	149122..149733	+	203	118475916	kbaA	BALH_0146	-	kinB signaling pathway activation protein
139	 36.08	0	149838..150602	-	254	118475917	cda	BALH_0147	-	xylanase/chitin deacetylase
140	 29.68	-1	150773..150991	+	72	118475918	-	BALH_0148	-	hypothetical protein
141	 39.55	+1	156963..158120	+	385	118475919	garK	BALH_0150	-	glycerate kinase
142	 37.92	0	158331..159224	+	297	118475920	rocF	BALH_0151	-	arginase
35.66	MEAN

3.36	STD DEV

Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.