IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.66   STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
803	 36.49	0	984227..985462	+	411	118476581	-	BALH_0856	-	hypothetical protein
804	 29.97	-1	985475..985771	+	98	118476582	-	BALH_0857	-	hypothetical protein
805	 37.25	0	986436..986741	+	101	118476583	-	BALH_0858	-	hypothetical protein
806	 35.18	0	987085..988491	-	468	118476584	-	BALH_0859	-	carboxylic ester hydrolase
807	 32.99	0	988915..989499	+	194	118476585	-	BALH_0860	-	hypothetical protein
808	 37.12	0	989617..990171	+	184	118476586	-	BALH_0861	-	membrane spanning protein
809	 35.22	0	990535..992391	-	618	118476587	-	BALH_0862	-	nucleotide sugar epimerase
810	 31.62	-1	992450..993034	-	194	118476588	-	BALH_0863	-	TetR family transcriptional regulator
811	 33.71	0	993435..993701	-	88	118476589	-	BALH_0864	-	hypothetical protein
812	 32.16	-1	994085..994594	+	169	118476590	-	BALH_0865	-	MarR family transcriptional regulator
813	 41.58	+1	994578..995171	+	197	118476591	-	BALH_0866	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
814	 29.87	-1	996549..997184	+	211	118476592	vanZ	BALH_0867	-	teicoplanin resistance protein
815	 31.13	-1	997314..997949	+	211	118476593	-	BALH_0868	-	hypothetical protein
816	 32.42	0	998183..998836	+	217	118476594	-	BALH_0869	-	hypothetical protein
817	 39.66	+1	998951..999961	-	336	118476595	-	BALH_0870	-	dihydroxyacetone kinase
818	 30.21	-1	999969..1000544	-	191	118476596	-	BALH_0871	-	TetR family transcriptional regulator
819	 42.24	+1	1000714..1002465	+	583	118476597	-	BALH_0872	-	dihydroxyacetone kinase
820	 31.46	-1	1002540..1003181	-	213	118476598	-	BALH_0873	-	acyl carrier protein phosphodiesterase
821	 34.31	0	1003386..1003898	+	170	118476599	-	BALH_0874	-	BadM/Rrf2 family transcriptional regulator
822	 43.72	+2	1004078..1004260	+	60	118476600	-	BALH_0875	-	dihydroxyacetone kinase
823	 31.71	-1	1005186..1006358	+	390	118476601	-	BALH_0876	-	response regulator
824	 28.07	-2	1007143..1008282	+	379	118476602	-	BALH_0877	-	HD domain-containing protein
825	 36.52	0	1008947..1009228	+	93	118476603	-	BALH_0878	-	hypothetical protein
826	 37.39	0	1011506..1013257	+	583	118476604	-	BALH_0879	-	S-layer protein
827	 33.64	0	1013386..1013712	+	108	118476605	-	BALH_0880	-	PadR family transcriptional regulator
828	 33.99	0	1013726..1014337	+	203	118476606	-	BALH_0881	-	hypothetical protein
829	 32.03	-1	1015378..1015839	-	153	118476607	-	BALH_0882	-	lipoprotein
830	 34.62	0	1016053..1016442	+	129	118476608	-	BALH_0883	-	hypothetical protein
831	 35.71	0	1016484..1016693	+	69	118476609	-	BALH_0884	-	hypothetical protein
832	 40.08	+1	1016769..1017020	+	83	118476610	-	BALH_0885	-	hypothetical protein
833	 32.84	0	1017203..1017403	-	66	118476611	-	BALH_0886	-	hypothetical protein
834	 28.32	-2	1017601..1017939	+	112	118476612	-	BALH_0887	-	anti-sigma B factor antagonist
835	 33.13	0	1017946..1018428	+	160	118476613	-	BALH_0888	-	serine-protein kinase RsbW
836	 36.16	0	1018391..1019167	+	258	118476614	-	BALH_0889	-	RNA polymerase sigma factor SigB
837	 34.37	0	1019194..1019676	+	160	118476615	-	BALH_0890	-	hypothetical protein
838	 32.20	-1	1019844..1020986	+	380	118476616	-	BALH_0891	-	sigma factor sigB regulation protein
839	 31.93	-1	1021025..1021882	-	285	118476617	-	BALH_0892	-	chemotaxis protein methyltransferase
840	 32.26	-1	1021899..1024589	-	896	118476618	-	BALH_0893	-	sensor histidine kinase
841	 27.78	-2	1024795..1025046	-	83	118476619	-	BALH_0894	-	hypothetical protein
842	 37.85	0	1025432..1025962	+	176	118476620	-	BALH_0895	-	hypothetical protein
843	 32.35	0	1026115..1026318	+	67	118476621	-	BALH_0896	-	hypothetical protein
844	 39.25	+1	1026452..1026772	+	106	118476622	-	BALH_0897	-	hypothetical protein
845	 40.89	+1	1027285..1028277	-	330	118476623	-	BALH_0898	-	NADPH:quinone reductase (quinone oxidoreductase)
846	 32.59	0	1028892..1030109	+	405	118476624	-	BALH_0899	-	sensor histidine kinase
847	 30.15	-1	1030084..1030743	+	219	118476625	-	BALH_0900	-	DNA-binding response regulator
848	 38.81	0	1032593..1032793	-	66	118476626	-	BALH_0901	-	hypothetical protein
849	 41.14	+1	1032946..1034187	+	413	118476627	-	BALH_0903	-	DNA repair exonuclease
850	 39.32	+1	1034184..1037108	+	974	118476628	-	BALH_0904	-	hypothetical protein
851	 37.25	0	1037150..1038094	+	314	118476629	-	BALH_0905	-	3'-5' exoribonuclease YhaM
852	 37.11	0	1038653..1039579	+	308	118476630	-	BALH_0906	-	hypothetical protein
853	 28.83	-2	1039602..1040090	+	162	118476631	-	BALH_0907	-	hypothetical protein
854	 30.21	-1	1040241..1040624	+	127	118476632	-	BALH_0908	-	hypothetical protein
855	 32.95	0	1040719..1040976	+	85	118476633	-	BALH_0909	-	hypothetical protein
856	 38.73	0	1041503..1042447	+	314	118476634	-	BALH_0910	-	glyoxalase family protein
857	 37.26	0	1042477..1043469	+	330	118476635	-	BALH_0911	-	glyoxalase family protein
858	 31.15	-1	1043675..1044820	+	381	118476636	-	BALH_0912	-	response regulator aspartate phosphatase
859	 45.53	+2	1044820..1045065	+	81	118476637	-	BALH_0913	-	hypothetical protein
860	 41.21	+1	1045301..1046176	+	291	118476638	-	BALH_0914	-	alpha/beta hydrolase fold family lipase
861	 35.24	0	1046593..1047483	+	296	118476639	-	BALH_0915	-	hypothetical protein
862	 39.04	+1	1048389..1048949	+	186	118476640	glpP	BALH_0916	-	glycerol uptake operon antiterminator regulatory protein
863	 40.14	+1	1049163..1049999	+	278	118476641	glpF	BALH_0917	-	glycerol uptake facilitator protein
864	 40.17	+1	1050013..1051503	+	496	118476642	glpK	BALH_0918	-	glycerol kinase
865	 40.77	+1	1051598..1053319	+	573	118476643	-	BALH_0919	-	glycerol-3-phosphate dehydrogenase
866	 27.66	-2	1054091..1054513	+	140	118476644	-	BALH_0920	-	hypothetical protein
867	 36.07	0	1054773..1055138	-	121	118476645	-	BALH_0921	-	hypothetical protein
868	 33.52	0	1055462..1055995	+	177	118476646	-	BALH_0922	-	RNA polymerase factor sigma C
869	 36.13	0	1056415..1057665	+	416	118476647	-	BALH_0923	-	cell cycle protein FtsW
870	 39.92	+1	1057723..1058208	-	161	118476648	-	BALH_0924	-	MarR family transcriptional regulator
871	 42.13	+1	1058612..1058827	-	71	118476649	-	BALH_0925	-	hypothetical protein
872	 39.37	+1	1059020..1060411	+	463	118476650	tetB	BALH_0927	-	major facilitator family transporter metal-tetracycline/H(+) antiporter
873	 39.26	+1	1060434..1061885	+	483	118476651	-	BALH_0929	-	permease, general substrate transporter
874	 39.94	+1	1062442..1064772	-	776	118476652	-	BALH_0930	-	ATP-dependent DNA helicase UvrD
875	 34.38	0	1065232..1066095	-	287	118476653	prsA	BALH_0931	-	peptidylprolyl isomerase
876	 35.63	0	1066822..1067169	+	115	118476654	-	BALH_0932	-	hypothetical protein
877	 35.48	0	1067175..1067732	-	185	118476655	-	BALH_0933	-	transcriptional regulator Hpr
878	 36.18	0	1068031..1068522	-	163	118476656	-	BALH_0934	-	hypothetical protein
879	 35.94	0	1068579..1069076	-	165	118476657	-	BALH_0935	-	HIT family protein
880	 37.63	0	1069576..1070319	+	247	118476658	ecsA	BALH_0936	-	ABC transporter, ATP-binding protein
881	 37.05	0	1070312..1071523	+	403	118476659	ecsB	BALH_0937	-	ABC transporter, permease component
882	 40.82	+1	1071537..1072244	+	235	118476660	ecsC	BALH_0938	-	ecsC-like protein
883	 36.20	0	1072560..1073153	+	197	118476661	-	BALH_0939	-	TetR family transcriptional regulator
884	 37.37	0	1073863..1075323	+	486	118476662	-	BALH_0940	-	hypothetical protein
885	 37.83	0	1075873..1076139	+	88	118476663	-	BALH_0941	-	hypothetical protein
886	 36.69	0	1076926..1077462	+	178	118476664	-	BALH_0942	-	TetR family transcriptional regulator
887	 33.62	0	1077788..1083427	+	1879	118476665	-	BALH_0943	-	collagen adhesion protein
888	 32.22	-1	1084210..1085106	+	298	118476666	-	BALH_0944	-	hypothetical protein
889	 34.27	0	1085333..1085653	+	106	118476667	-	BALH_0945	-	hypothetical protein
890	 37.74	0	1085729..1086205	+	158	118476668	-	BALH_0946	-	hypothetical protein
891	 38.59	0	1086189..1087616	+	475	118476669	-	BALH_0947	-	hypothetical protein
892	 40.08	+1	1087782..1088285	-	167	118476670	-	BALH_0948	-	hypothetical protein
893	 38.99	0	1088302..1090530	+	742	118476671	pbpF	BALH_0949	-	penicillin-binding protein 1
894	 39.87	+1	1090686..1091756	+	356	118476672	hemE	BALH_0950	-	uroporphyrinogen decarboxylase
895	 37.39	0	1091771..1092706	+	311	118476673	hemH	BALH_0951	-	ferrochelatase
896	 42.33	+1	1092726..1094147	+	473	118476674	-	BALH_0952	-	protoporphyrinogen oxidase
897	 35.89	0	1094187..1095557	-	456	118476675	-	BALH_0953	-	hypothetical protein
898	 37.43	0	1095781..1098147	+	788	118476676	-	BALH_0954	-	endonuclease/exonuclease/phosphatase
899	 33.83	0	1098566..1099378	+	270	118476677	pip	BALH_0955	-	proline iminopeptidase
900	 35.62	0	1099439..1100311	-	290	118476678	-	BALH_0956	-	hypothetical protein
901	 34.78	0	1100664..1101077	+	137	118476679	-	BALH_0957	-	penicillinase repressor
902	 32.87	0	1101080..1103029	+	649	118476680	-	BALH_0958	-	methicillin resistance protein
35.66	MEAN

3.36	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.