IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.66   STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
761	 37.42	0	928825..930438	+	537	118476539	-	BALH_0810	-	N-acetylmuramoyl-L-alanine amidase
762	 40.88	+1	930571..931524	+	317	118476540	-	BALH_0811	-	methyltransferase
763	 38.68	0	931728..931970	-	80	118476541	-	BALH_0812	-	hypothetical protein
764	 39.70	+1	931988..933103	+	371	118476542	-	BALH_0813	-	proline racemase
765	 42.23	+1	933123..934100	+	325	118476543	-	BALH_0814	-	ornithine cyclodeaminase
766	 30.14	-1	934182..934463	-	93	118476544	-	BALH_0815	-	hypothetical protein
767	 35.41	0	934659..936245	+	528	118476545	oppA	BALH_0816	-	oligopeptide transporter, periplasmic-binding protein
768	 36.91	0	936301..937251	+	316	118476546	-	BALH_0817	-	oligopeptide ABC transporter, permease
769	 37.32	0	937258..938109	+	283	118476547	oppC	BALH_0818	-	oligopeptide ABC transporter, permease component
770	 41.64	+1	938118..939128	+	336	118476548	oppD	BALH_0819	-	oligopeptide ABC transporter, ATP-binding protein
771	 41.28	+1	939112..940092	+	326	118476549	oppF	BALH_0820	-	oligopeptide ABC transporter, ATP-binding protein
772	 36.99	0	940395..941378	+	327	118476550	-	BALH_0821	-	hypothetical protein
773	 30.47	-1	941542..943044	+	500	118476551	-	BALH_0822	-	ATP/GTP binding protein
774	 32.27	-1	943061..945310	+	749	118476552	-	BALH_0823	-	GTPase
775	 34.62	0	945318..945860	+	180	118476553	-	BALH_0824	-	hypothetical protein
776	 31.77	-1	945947..946459	+	170	118476554	-	BALH_0825	-	hypothetical protein
777	 34.75	0	946488..949742	+	1084	118476555	-	BALH_0827	-	hypothetical protein
778	 37.04	0	949703..950296	+	197	118476556	-	BALH_0828	-	hypothetical protein
779	 29.68	-1	950315..950779	+	154	118476557	-	BALH_0829	-	hypothetical protein
780	 43.37	+2	950856..952190	-	444	118476558	-	BALH_0830	-	major facilitator superfamily sugar transporter
781	 36.98	0	952410..953999	+	529	118476559	-	BALH_0831	-	sensor histidine kinase
782	 38.35	0	954019..954696	+	225	118476560	citT	BALH_0832	-	two-component response regulator
783	 43.46	+2	954624..955670	+	348	118476561	-	BALH_0833	-	hypothetical protein
784	 32.81	0	955788..956927	+	379	118476562	-	BALH_0834	-	hypothetical protein
785	 33.83	0	956891..959935	+	1014	118476563	-	BALH_0835	-	hypothetical protein
786	 33.84	0	959942..962332	+	796	118476564	-	BALH_0836	-	hypothetical protein
787	 35.13	0	962429..963376	+	315	118476565	-	BALH_0837	-	hypothetical protein
788	 34.12	0	963500..966034	+	844	118476566	-	BALH_0839	-	5-methylcytosine-specific restriction related protein
789	 36.32	0	966006..968447	+	813	118476567	-	BALH_0840	-	hypothetical protein
790	 31.32	-1	968707..969153	+	148	118476568	-	BALH_0841	-	hypothetical protein
791	 28.37	-2	969546..970331	+	261	118476569	-	BALH_0842	-	hypothetical protein
792	 33.48	0	970321..974322	+	1333	118476570	-	BALH_0843	-	type II restriction endonuclease
793	 47.15	+2	975280..976140	+	286	118476571	-	BALH_0844	-	DnaD domain-containing protein
794	 43.83	+2	976128..977423	+	431	118476572	-	BALH_0845	-	replicative DNA helicase
795	 35.37	0	977697..978482	-	261	118476573	-	BALH_0846	-	transcriptional regulator
796	 35.67	0	978699..979511	+	270	118476574	-	BALH_0847	-	hypothetical protein
797	 32.64	0	979754..980329	-	191	118476575	-	BALH_0848	-	TetR family transcriptional regulator
798	 37.13	0	980471..981946	+	491	118476576	-	BALH_0851	-	lincomycin resistance protein
799	 38.86	0	981988..982530	-	180	118476577	-	BALH_0852	-	hypothetical protein
800	 35.38	0	982987..983328	-	113	118476578	-	BALH_0853	-	PadR family transcriptional regulator
801	 30.62	-1	983421..983678	-	85	118476579	-	BALH_0854	-	transposase domain-containing protein
802	 28.35	-2	983836..984096	-	86	118476580	-	BALH_0855	-	hypothetical protein
803	 36.49	0	984227..985462	+	411	118476581	-	BALH_0856	-	hypothetical protein
804	 29.97	-1	985475..985771	+	98	118476582	-	BALH_0857	-	hypothetical protein
805	 37.25	0	986436..986741	+	101	118476583	-	BALH_0858	-	hypothetical protein
806	 35.18	0	987085..988491	-	468	118476584	-	BALH_0859	-	carboxylic ester hydrolase
807	 32.99	0	988915..989499	+	194	118476585	-	BALH_0860	-	hypothetical protein
808	 37.12	0	989617..990171	+	184	118476586	-	BALH_0861	-	membrane spanning protein
809	 35.22	0	990535..992391	-	618	118476587	-	BALH_0862	-	nucleotide sugar epimerase
810	 31.62	-1	992450..993034	-	194	118476588	-	BALH_0863	-	TetR family transcriptional regulator
811	 33.71	0	993435..993701	-	88	118476589	-	BALH_0864	-	hypothetical protein
812	 32.16	-1	994085..994594	+	169	118476590	-	BALH_0865	-	MarR family transcriptional regulator
813	 41.58	+1	994578..995171	+	197	118476591	-	BALH_0866	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
814	 29.87	-1	996549..997184	+	211	118476592	vanZ	BALH_0867	-	teicoplanin resistance protein
815	 31.13	-1	997314..997949	+	211	118476593	-	BALH_0868	-	hypothetical protein
816	 32.42	0	998183..998836	+	217	118476594	-	BALH_0869	-	hypothetical protein
817	 39.66	+1	998951..999961	-	336	118476595	-	BALH_0870	-	dihydroxyacetone kinase
818	 30.21	-1	999969..1000544	-	191	118476596	-	BALH_0871	-	TetR family transcriptional regulator
819	 42.24	+1	1000714..1002465	+	583	118476597	-	BALH_0872	-	dihydroxyacetone kinase
820	 31.46	-1	1002540..1003181	-	213	118476598	-	BALH_0873	-	acyl carrier protein phosphodiesterase
821	 34.31	0	1003386..1003898	+	170	118476599	-	BALH_0874	-	BadM/Rrf2 family transcriptional regulator
822	 43.72	+2	1004078..1004260	+	60	118476600	-	BALH_0875	-	dihydroxyacetone kinase
823	 31.71	-1	1005186..1006358	+	390	118476601	-	BALH_0876	-	response regulator
824	 28.07	-2	1007143..1008282	+	379	118476602	-	BALH_0877	-	HD domain-containing protein
825	 36.52	0	1008947..1009228	+	93	118476603	-	BALH_0878	-	hypothetical protein
826	 37.39	0	1011506..1013257	+	583	118476604	-	BALH_0879	-	S-layer protein
827	 33.64	0	1013386..1013712	+	108	118476605	-	BALH_0880	-	PadR family transcriptional regulator
828	 33.99	0	1013726..1014337	+	203	118476606	-	BALH_0881	-	hypothetical protein
829	 32.03	-1	1015378..1015839	-	153	118476607	-	BALH_0882	-	lipoprotein
830	 34.62	0	1016053..1016442	+	129	118476608	-	BALH_0883	-	hypothetical protein
831	 35.71	0	1016484..1016693	+	69	118476609	-	BALH_0884	-	hypothetical protein
832	 40.08	+1	1016769..1017020	+	83	118476610	-	BALH_0885	-	hypothetical protein
833	 32.84	0	1017203..1017403	-	66	118476611	-	BALH_0886	-	hypothetical protein
834	 28.32	-2	1017601..1017939	+	112	118476612	-	BALH_0887	-	anti-sigma B factor antagonist
835	 33.13	0	1017946..1018428	+	160	118476613	-	BALH_0888	-	serine-protein kinase RsbW
836	 36.16	0	1018391..1019167	+	258	118476614	-	BALH_0889	-	RNA polymerase sigma factor SigB
837	 34.37	0	1019194..1019676	+	160	118476615	-	BALH_0890	-	hypothetical protein
838	 32.20	-1	1019844..1020986	+	380	118476616	-	BALH_0891	-	sigma factor sigB regulation protein
839	 31.93	-1	1021025..1021882	-	285	118476617	-	BALH_0892	-	chemotaxis protein methyltransferase
840	 32.26	-1	1021899..1024589	-	896	118476618	-	BALH_0893	-	sensor histidine kinase
841	 27.78	-2	1024795..1025046	-	83	118476619	-	BALH_0894	-	hypothetical protein
842	 37.85	0	1025432..1025962	+	176	118476620	-	BALH_0895	-	hypothetical protein
843	 32.35	0	1026115..1026318	+	67	118476621	-	BALH_0896	-	hypothetical protein
844	 39.25	+1	1026452..1026772	+	106	118476622	-	BALH_0897	-	hypothetical protein
845	 40.89	+1	1027285..1028277	-	330	118476623	-	BALH_0898	-	NADPH:quinone reductase (quinone oxidoreductase)
846	 32.59	0	1028892..1030109	+	405	118476624	-	BALH_0899	-	sensor histidine kinase
847	 30.15	-1	1030084..1030743	+	219	118476625	-	BALH_0900	-	DNA-binding response regulator
848	 38.81	0	1032593..1032793	-	66	118476626	-	BALH_0901	-	hypothetical protein
849	 41.14	+1	1032946..1034187	+	413	118476627	-	BALH_0903	-	DNA repair exonuclease
850	 39.32	+1	1034184..1037108	+	974	118476628	-	BALH_0904	-	hypothetical protein
851	 37.25	0	1037150..1038094	+	314	118476629	-	BALH_0905	-	3'-5' exoribonuclease YhaM
852	 37.11	0	1038653..1039579	+	308	118476630	-	BALH_0906	-	hypothetical protein
853	 28.83	-2	1039602..1040090	+	162	118476631	-	BALH_0907	-	hypothetical protein
854	 30.21	-1	1040241..1040624	+	127	118476632	-	BALH_0908	-	hypothetical protein
855	 32.95	0	1040719..1040976	+	85	118476633	-	BALH_0909	-	hypothetical protein
856	 38.73	0	1041503..1042447	+	314	118476634	-	BALH_0910	-	glyoxalase family protein
857	 37.26	0	1042477..1043469	+	330	118476635	-	BALH_0911	-	glyoxalase family protein
858	 31.15	-1	1043675..1044820	+	381	118476636	-	BALH_0912	-	response regulator aspartate phosphatase
859	 45.53	+2	1044820..1045065	+	81	118476637	-	BALH_0913	-	hypothetical protein
860	 41.21	+1	1045301..1046176	+	291	118476638	-	BALH_0914	-	alpha/beta hydrolase fold family lipase
35.66	MEAN

3.36	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.