IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
437	 40.77	+1	527794..529098	-	434	118476215	hemL	BALH_0464	-	glutamate-1-semialdehyde aminotransferase
438	 35.50	0	529220..530233	+	337	118476216	drrA	BALH_0465	-	daunorubicin resistance, ATP-binding protein
439	 32.84	0	530208..531017	+	269	118476217	-	BALH_0466	-	daunorubicin resistance ABC transporter, permease component
440	 36.06	0	531001..531807	+	268	118476218	-	BALH_0467	-	ABC transporter permease
441	 37.63	0	532320..532784	+	154	118476219	bcp	BALH_0468	-	hypothetical protein
442	 38.16	0	533077..533511	+	144	118476220	perR	BALH_0469	-	peroxide operon regulator
443	 38.68	0	540989..541717	+	242	118476221	-	BALH_0472	-	hypothetical protein
444	 37.62	0	541791..542303	+	170	118476222	-	BALH_0473	-	MutT/NUDIX family protein
445	 38.74	0	542730..542951	+	73	118476223	-	BALH_0474	-	hypothetical protein
446	 33.33	0	543244..543426	-	60	118476224	-	BALH_0475	-	hypothetical protein
447	 27.31	-2	543619..544581	+	320	118476225	-	BALH_0476	-	hypothetical protein
448	 31.24	-1	544592..545881	+	429	118476226	-	BALH_0477	-	hypothetical protein
449	 27.05	-2	545904..546731	+	275	118476227	-	BALH_0478	-	nitroreductase
450	 25.08	-2	546724..548370	+	548	118476228	-	BALH_0479	-	ABC transporter, ATP-binding and permease component
451	 29.88	-1	548367..549380	+	337	118476229	-	BALH_0480	-	hypothetical protein
452	 26.84	-2	549555..550016	+	153	118476230	-	BALH_0481	-	hypothetical protein
453	 34.10	0	551040..551825	+	261	118476231	mrcA	BALH_0482	-	penicillin-binding protein 1A
454	 33.03	0	552007..552663	+	218	118476232	bdbD	BALH_0483	-	thiol-disulfide oxidoreductase
455	 30.53	-1	553132..554700	+	522	118476233	-	BALH_0484	-	transposase
456	 39.20	+1	554949..556091	+	380	118476234	-	BALH_0485	-	iron-sulfur cluster-binding protein
457	 35.59	0	556136..557023	+	295	118476235	-	BALH_0486	-	hypothetical protein
458	 32.92	0	557082..557570	+	162	118476236	cspR	BALH_0487	-	RNA methyltransferase
459	 30.19	-1	557698..559767	+	689	118476237	-	BALH_0488	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
460	 37.39	0	560159..562054	+	631	118476238	prkA	BALH_0489	-	serine protein kinase
461	 36.31	0	562500..563675	+	391	118476239	-	BALH_0490	-	hypothetical protein
462	 31.95	-1	563763..567155	+	1130	118476240	-	BALH_0491	-	internalin protein
463	 32.34	0	567598..568098	+	166	118476241	-	BALH_0492	-	acetyltransferase
464	 36.17	0	568304..569923	-	539	118476242	opuD	BALH_0494	-	glycine betaine transporter
465	 34.75	0	570123..573020	+	965	118476243	colA	BALH_0495	-	collagenase ColA
466	 32.24	-1	573267..573815	+	182	118476244	-	BALH_0496	-	hypothetical protein
467	 38.22	0	573828..575402	+	524	118476245	-	BALH_0497	-	SPFH domain-containing protein/band 7 family protein
468	 34.24	0	575639..577615	+	658	118476246	cheW	BALH_0498	-	methyl-accepting chemotaxis protein
469	 34.51	0	577767..579377	+	536	118476247	citS	BALH_0499	-	sensor histidine kinase
470	 36.51	0	579377..580069	+	230	118476248	-	BALH_0500	-	response regulator
471	 37.93	0	580112..581416	-	434	118476249	citN	BALH_0501	-	citrate transporter
472	 31.76	-1	581668..581922	+	84	118476250	-	BALH_0502	-	hypothetical protein
473	 33.33	0	582057..582560	+	167	118476251	-	BALH_0503	-	hypothetical protein
474	 35.86	0	582850..583719	+	289	118476252	-	BALH_0504	-	ankyrin repeat-containing protein
475	 35.63	0	584278..584844	+	188	118476253	glpP	BALH_0505	-	glycerol-3-phosphate responsive antiterminator
476	 36.52	0	584808..585938	+	376	118476254	-	BALH_0506	-	glycerol-3-phosphate ABC transporter, ATP-binding protein
477	 33.12	0	585938..586870	+	310	118476255	-	BALH_0507	-	glycerol-3-phosphate ABC transporter, permease component
478	 34.43	0	586867..587688	+	273	118476256	-	BALH_0508	-	glycerol-3-phosphate ABC transporter, permease component
479	 36.31	0	587710..589086	+	458	118476257	-	BALH_0509	-	ABC transporter, glycerol-3-phosphate periplasmic binding protein
480	 35.18	0	589503..590207	+	234	118476258	pphA	BALH_0510	-	serine/threonine protein phosphatase
481	 34.62	0	590330..591028	+	232	118476259	llrF	BALH_0511	-	response regulator
482	 34.77	0	591025..592275	+	416	118476260	-	BALH_0512	-	sensor histidine kinase
483	 33.94	0	592481..593302	+	273	118476261	-	BALH_0513	-	hypothetical protein
484	 35.33	0	593310..594062	+	250	118476262	-	BALH_0514	-	hypothetical protein
485	 35.00	0	594277..596259	+	660	118476263	mcpA	BALH_0515	-	methyl-accepting chemotaxis protein
486	 33.81	0	596278..597942	+	554	118476264	-	BALH_0516	-	sensory histidine kinase DcuS
487	 32.20	-1	597939..598646	+	235	118476265	-	BALH_0517	-	response regulator
488	 36.60	0	598769..600115	+	448	118476266	maeN	BALH_0519	-	Na+/malate symporter
489	 38.25	0	600175..601374	+	399	118476267	sfcA	BALH_0520	-	malate dehydrogenase
490	 35.24	0	601672..602196	-	174	118476268	-	BALH_0521	-	hypothetical protein
491	 35.91	0	602312..603283	-	323	118476269	-	BALH_0522	-	DMT family permease
492	 35.12	0	603359..604759	+	466	118476270	-	BALH_0523	-	GntR family transcriptional regulator
493	 34.11	0	604793..605305	-	170	118476271	-	BALH_0524	-	acetyltransferase
494	 33.06	0	605597..607060	-	487	118476272	-	BALH_0525	-	sensor histidine kinase
495	 33.77	0	607126..607809	-	227	118476273	llrF	BALH_0526	-	response regulator
496	 36.43	0	608610..609158	-	182	118476274	-	BALH_0527	-	acetyltransferase
497	 34.16	0	609346..610188	-	280	118476275	fdhD	BALH_0528	-	formate dehydrogenase accessory protein
498	 39.45	+1	610432..613392	+	986	118476276	fdhF	BALH_0529	-	formate dehydrogenase, alpha subunit
499	 37.68	0	613405..613887	+	160	118476277	-	BALH_0530	-	hypothetical protein
500	 33.01	0	614031..615914	+	627	118476278	glpQ	BALH_0531	-	glycerophosphodiester phosphodiesterase
501	 39.15	+1	616283..617416	+	377	118476279	ald	BALH_0532	-	L-alanine dehydrogenase
502	 37.08	0	617520..618935	+	471	118476280	-	BALH_0534	-	amino acid permease
503	 34.92	0	619203..619580	+	125	118476281	-	BALH_0535	-	ArsR family transcriptional regulator
504	 36.46	0	619605..621971	+	788	118476282	-	BALH_0536	-	cation-transporting ATPase, P-type
505	 36.48	0	622377..623840	-	487	118476283	pncB	BALH_0537	-	nicotinate phosphoribosyltransferase
506	 30.32	-1	624040..625299	+	419	118476284	nprR	BALH_0538	-	transcriptional activator
507	 37.92	0	625608..627308	+	566	118476285	nprE	BALH_0539	-	thermolysin
508	 35.70	0	627369..627917	-	182	118476286	-	BALH_0540	-	hypothetical protein
509	 33.72	0	628313..628834	+	173	118476287	-	BALH_0541	-	hypothetical protein
510	 34.80	0	628850..629122	+	90	118476288	-	BALH_0542	-	hypothetical protein
511	 33.10	0	629171..630433	-	420	118476289	-	BALH_0543	-	vancomycin b-type resistance protein
512	 33.33	0	630668..631822	-	384	118476290	lytR	BALH_0544	-	LytR family transcriptional regulator
513	 35.88	0	631945..633123	-	392	118476291	nupC	BALH_0545	-	nucleoside permease
514	 36.18	0	633215..633601	+	128	118476292	gloA	BALH_0546	-	lactoylglutathione lyase
515	 34.87	0	633709..635007	+	432	118476293	-	BALH_0547	-	hypothetical protein
516	 38.74	0	635160..636602	+	480	118476294	aspA	BALH_0548	-	aspartate ammonia-lyase
517	 35.56	0	636642..638261	-	539	118476295	lldP	BALH_0549	-	L-lactate permease
518	 32.99	0	639095..639382	+	95	118476296	-	BALH_0550	-	ArsR family transcriptional regulator
519	 34.89	0	639791..641140	-	449	118476297	ptr	BALH_0551	-	POT family peptide transport protein
520	 33.75	0	641522..642487	-	321	118476298	fecB	BALH_0552	-	iron(III) dicitrate ABC transporter, periplasmic protein
521	 37.93	0	642642..643664	+	340	118476299	fecC	BALH_0554	-	iron compound ABC transporter, permease component
522	 38.90	0	643661..644719	+	352	118476300	fecD	BALH_0555	-	iron(III) dicitrate ABC transporter, permease component
523	 37.68	0	644726..645553	+	275	118476301	fecE	BALH_0556	-	iron(III) dicitrate ABC transporter, ATP-binding protein
524	 34.43	0	645586..646317	-	243	118476302	-	BALH_0557	-	SAM-dependent methyltransferase
525	 36.69	0	646531..647721	+	396	162382785	kbl	BALH_0558	-	2-amino-3-ketobutyrate coenzyme A ligase
526	 38.77	0	647757..648731	+	324	118476304	-	BALH_0559	-	L-threonine 3-dehydrogenase
527	 39.68	+1	648768..649208	+	146	118476305	-	BALH_0560	-	MutT/NUDIX family protein
528	 35.51	0	649247..651127	-	626	118476306	-	BALH_0561	-	hypothetical protein
529	 34.63	0	651131..652132	-	333	118476307	norQ	BALH_0562	-	nitric-oxide reductase
530	 34.58	0	652152..653681	-	509	118476308	cls	BALH_0563	-	cardiolipin synthetase
531	 48.21	+2	653983..654318	+	111	118476309	-	BALH_0564	-	hypothetical protein
532	 35.38	0	654679..656388	+	569	118476310	-	BALH_0565	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
533	 36.91	0	656420..657817	-	465	118476311	arcD	BALH_0566	-	arginine/ornithine antiporter
534	 33.90	0	658270..658980	+	236	118476312	-	BALH_0567	-	GntR family transcriptional regulator
535	 38.17	0	659118..660545	+	475	118476313	treP	BALH_0568	-	PTS system, trehalose-specific IIBC component
536	 34.53	0	660553..662220	+	555	118476314	treC	BALH_0569	-	trehalose-6-phosphate hydrolase
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.