IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4193	 43.00	+2	4638640..4639746	-	368	118479971	menC	BALH_4417	-	o-succinylbenzoate synthase
4194	 40.37	+1	4639747..4641195	-	482	118479972	menE	BALH_4418	-	O-succinylbenzoic acid--CoA ligase
4195	 43.96	+2	4641423..4642241	-	272	118479973	menB	BALH_4419	-	naphthoate synthase
4196	 41.21	+1	4642311..4643123	-	270	118479974	-	BALH_4420	-	alpha/beta fold family hydrolase
4197	 40.46	+1	4643120..4644874	-	584	118479975	menD	BALH_4421	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
4198	 38.21	0	4644871..4646265	-	464	118479976	menF	BALH_4422	-	menaquinone-specific isochorismate synthase
4199	 40.69	+1	4646394..4647413	+	339	118479977	menA	BALH_4423	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
4200	 38.66	0	4647523..4648254	+	243	118479978	-	BALH_4424	-	DnaK suppressor protein
4201	 39.30	+1	4648299..4648499	-	66	118479979	cspD	BALH_4425	-	cold-shock DNA-binding protein family protein
4202	 42.05	+1	4648817..4649608	+	263	118479980	-	BALH_4426	-	hypothetical protein
4203	 37.90	0	4649887..4650609	+	240	118479981	-	BALH_4427	-	lipase
4204	 37.53	0	4651036..4653444	-	802	118479982	glgP	BALH_4428	-	glycogen phosphorylase
4205	 37.41	0	4653463..4654959	-	498	118479983	glgA	BALH_4429	-	glycogen synthase
4206	 36.04	0	4655006..4656040	-	344	118479984	glgD	BALH_4430	-	glucose-1-phosphate adenylyltransferase
4207	 38.37	0	4656059..4657189	-	376	118479985	glgC	BALH_4431	-	glucose-1-phosphate adenylyltransferase
4208	 37.32	0	4657137..4659119	-	660	118479986	glgB	BALH_4432	-	glycogen branching enzyme
4209	 36.14	0	4659543..4660148	+	201	118479987	calY	BALH_4433	-	camelysin
4210	 37.00	0	4660181..4664404	+	1407	118479988	-	BALH_4434	-	peptidase Vpr
4211	 39.05	+1	4664576..4665520	-	314	118479989	ldh	BALH_4435	-	L-lactate dehydrogenase
4212	 35.26	0	4673333..4674112	+	259	118479990	mgtC	BALH_4437	-	MgtC/SapB family membrane protein
4213	 34.74	0	4674208..4675203	+	331	118479991	kch	BALH_4438	-	potassium channel protein
4214	 36.90	0	4675190..4675609	-	139	118479992	-	BALH_4439	-	hypothetical protein
4215	 37.62	0	4675711..4677063	-	450	118479993	pgi	BALH_4440	-	glucose-6-phosphate isomerase
4216	 36.39	0	4677684..4678043	-	119	118479994	-	BALH_4441	-	general stress protein 13
4217	 38.54	0	4678282..4679472	-	396	118479995	aspC	BALH_4442	-	hypothetical protein
4218	 35.11	0	4679469..4679975	-	168	118479996	-	BALH_4443	-	AsnC family transcriptional regulator
4219	 38.47	0	4680232..4681224	+	330	118479997	-	BALH_4444	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
4220	 36.79	0	4681334..4682173	+	279	118479998	-	BALH_4445	-	alpha/beta hydrolase fold protein
4221	 38.49	0	4682203..4682454	-	83	118479999	-	BALH_4446	-	hypothetical protein
4222	 37.58	0	4682572..4683726	+	384	118480000	patB	BALH_4447	-	aminotransferase, classes I and II
4223	 40.87	+1	4683860..4684456	-	198	118480001	sodC	BALH_4448	-	superoxide dismutase, Cu-Zn
4224	 37.10	0	4684468..4684653	-	61	118480002	-	BALH_4449	-	hypothetical protein
4225	 35.37	0	4684801..4685193	+	130	118480003	kapB	BALH_4450	-	kinase-associated protein B
4226	 37.34	0	4685235..4685858	-	207	118480004	kapD	BALH_4451	-	sporulation inhibitor KapD
4227	 37.08	0	4686139..4687473	+	444	118480005	arsB	BALH_4452	-	arsenical pump membrane protein
4228	 37.22	0	4688034..4688831	+	265	118480006	-	BALH_4453	-	DNA-7-methylguanine glycosylase
4229	 40.38	+1	4689179..4690555	+	458	118480007	glyS	BALH_4454	-	glycyl-tRNA synthetase
4230	 38.27	0	4690593..4690997	-	134	118480008	comA	BALH_4455	-	comA operon protein
4231	 31.72	-1	4691072..4691815	+	247	118480009	-	BALH_4456	-	hypothetical protein
4232	 39.90	+1	4691866..4692459	+	197	118480010	bioY	BALH_4457	-	biotin synthesis protein
4233	 37.15	0	4692505..4693395	-	296	118480011	gtaB	BALH_4458	-	UDP-glucose pyrophosphorylase
4234	 38.67	0	4693501..4695225	-	574	118480012	manB	BALH_4459	-	alpha-phosphoglucomutase
4235	 37.72	0	4695360..4695974	+	204	118480013	-	BALH_4460	-	hypothetical protein
4236	 39.73	+1	4696057..4697541	-	494	118480014	pepA	BALH_4461	-	leucyl aminopeptidase
4237	 37.42	0	4697687..4698346	-	219	118480015	-	BALH_4462	-	hypothetical protein
4238	 40.83	+1	4698714..4699220	-	168	118480016	-	BALH_4463	-	MutT/NUDIX family protein
4239	 39.03	+1	4699344..4700555	-	403	118480017	-	BALH_4464	-	pyridine nucleotide-disulphide oxidoreductase
4240	 39.36	+1	4701009..4702004	+	331	118480018	trxB	BALH_4465	-	thioredoxin-disulfide reductase
4241	 37.42	0	4702071..4712837	-	3588	118480019	-	BALH_4466	-	cell surface anchor
4242	 38.57	0	4713282..4713758	+	158	118480020	-	BALH_4467	-	hypothetical protein
4243	 37.98	0	4713934..4715181	+	415	118480021	-	BALH_4468	-	transporter
4244	 36.79	0	4715192..4716088	-	298	118480022	-	BALH_4469	-	hypothetical protein
4245	 38.96	0	4716159..4716620	+	153	118480023	-	BALH_4470	-	hypothetical protein
4246	 31.96	-1	4716649..4717011	-	120	118480024	-	BALH_4471	-	hypothetical protein
4247	 39.69	+1	4717231..4717623	-	130	118480025	-	BALH_4472	-	hypothetical protein
4248	 39.68	+1	4717626..4718492	-	288	118480026	dapF	BALH_4473	-	diaminopimelate epimerase
4249	 32.74	0	4718773..4719111	+	112	118480027	-	BALH_4474	-	hypothetical protein
4250	 39.78	+1	4719327..4720397	+	356	118480028	-	BALH_4475	-	pyridine nucleotide-disulphide oxidoreductase
4251	 36.67	0	4720856..4721515	+	219	118480029	-	BALH_4476	-	ABC transporter, ATP-binding protein
4252	 39.49	+1	4721436..4722296	+	286	118480030	-	BALH_4477	-	hypothetical protein
4253	 38.57	0	4722476..4722838	-	120	118480031	phnA	BALH_4478	-	alkylphosphonate utilization operon protein
4254	 33.96	0	4723053..4723850	-	265	118480032	-	BALH_4479	-	hypothetical protein
4255	 31.13	-1	4724248..4724883	-	211	118480033	-	BALH_4480	-	CAAX amino terminal protease
4256	 36.86	0	4724949..4725827	-	292	118480034	-	BALH_4481	-	nucleotidyltransferase domain-containing protein
4257	 36.83	0	4725796..4726167	-	123	118480035	-	BALH_4482	-	hypothetical protein
4258	 40.51	+1	4726311..4726547	+	78	118480036	nifU	BALH_4483	-	NifU-like domain-containing protein
4259	 32.58	0	4726816..4727079	+	87	118480037	-	BALH_4484	-	hypothetical protein
4260	 37.67	0	4727141..4728154	-	337	118480038	cotS	BALH_4485	-	spore coat protein
4261	 36.13	0	4728254..4728754	+	166	118480039	ltrC	BALH_4486	-	low temperature requirement C protein
4262	 38.75	0	4728775..4729254	-	159	118480040	-	BALH_4487	-	acetyltransferase
4263	 36.20	0	4729757..4732333	-	858	118480041	-	BALH_4489	-	ABC transporter, permease component
4264	 38.62	0	4732314..4733108	-	264	118480042	-	BALH_4490	-	ABC transporter, ATP binding protein
4265	 38.32	0	4733304..4733885	+	193	118480043	-	BALH_4491	-	NAD(P)H dehydrogenase (quinone)
4266	 39.61	+1	4734110..4734874	-	254	118480044	-	BALH_4492	-	HAD superfamily hydrolase
4267	 37.28	0	4734984..4735616	-	210	118480045	-	BALH_4493	-	transcriptional regulator
4268	 33.33	0	4735688..4736137	-	149	118480046	-	BALH_4494	-	hypothetical protein
4269	 41.26	+1	4736276..4737247	+	323	118480047	fbp	BALH_4495	-	fructose 1,6-bisphosphatase II
4270	 39.19	+1	4737259..4737531	+	90	118480048	-	BALH_4496	-	hypothetical protein
4271	 33.73	0	4737904..4738401	+	165	118480049	-	BALH_4497	-	hypothetical protein
4272	 37.15	0	4738886..4739461	+	191	118480050	-	BALH_4498	-	hypothetical protein
4273	 38.86	0	4739499..4740185	-	228	118480051	tipA	BALH_4499	-	transcriptional activator TipA
4274	 37.11	0	4740178..4741131	+	317	118480052	-	BALH_4500	-	membrane protein
4275	 32.02	-1	4741157..4741690	-	177	118480053	-	BALH_4501	-	hypothetical protein
4276	 37.30	0	4741734..4742288	+	184	118480054	gpmA	BALH_4502	-	phosphoglycerate mutase
4277	 37.50	0	4742363..4742842	+	159	118480055	-	BALH_4503	-	hypothetical protein
4278	 38.85	0	4742863..4743768	-	301	118480056	lipA	BALH_4504	-	lipoyl synthase
4279	 40.46	+1	4743853..4744932	+	359	118480057	-	BALH_4505	-	M24/M37 family peptidase
4280	 37.02	0	4744963..4745694	-	243	118480058	-	BALH_4506	-	hypothetical protein
4281	 38.61	0	4745749..4746051	-	100	118480059	-	BALH_4507	-	hypothetical protein
4282	 39.78	+1	4746117..4747373	-	418	118480060	ushA	BALH_4508	-	5'-nucleotidase
4283	 34.74	0	4747995..4748561	+	188	118480061	-	BALH_4509	-	PadR family transcriptional regulator
4284	 33.20	0	4748537..4749289	+	250	118480062	-	BALH_4510	-	antibiotic resistance protein
4285	 40.49	+1	4749645..4751042	-	465	118480063	sufB	BALH_4511	-	FeS assembly protein SufB
4286	 37.04	0	4751091..4751522	-	143	118480064	nifU	BALH_4512	-	NifU family protein
4287	 38.90	0	4751512..4752732	-	406	118480065	-	BALH_4513	-	cysteine desulfurase, aminotransferase class-V
4288	 41.38	+1	4752732..4754024	-	430	118480066	sufB	BALH_4514	-	FeS assembly protein SufB
4289	 39.19	+1	4754040..4754825	-	261	118480067	sufC	BALH_4515	-	iron regulated ABC transporter, ATP-binding protein
4290	 33.71	0	4755065..4755871	-	268	118480068	-	BALH_4516	-	ABC transporter, substrate-binding protein
4291	 32.85	0	4755944..4756765	-	273	118480069	-	BALH_4517	-	ABC transporter, substrate-binding protein
4292	 37.80	0	4756780..4757451	-	223	118480070	-	BALH_4518	-	ABC transporter, permease component
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.