IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
370	 36.76	0	451171..452484	-	437	118476148	-	BALH_0395	-	type I phosphodiesterase/nucleotide pyrophosphatase family protein
371	 36.13	0	453279..454709	+	476	162382786	proS	BALH_0396	-	prolyl-tRNA synthetase
372	 50.27	+2	454826..455764	-	312	118476150	-	BALH_0397	-	pentapeptide repeat-containing protein
373	 35.15	0	455968..456846	+	292	118476151	-	BALH_0398	-	ROK family protein
374	 36.36	0	456975..457568	+	197	118476152	terD	BALH_0399	-	TerD family tellurium resistance protein
375	 37.90	0	457589..458179	+	196	118476153	terD	BALH_0400	-	TerD family tellurium resistance protein
376	 39.03	+1	458260..458838	+	192	118476154	terD	BALH_0401	-	TerD family tellurium resistance protein
377	 34.47	0	458912..459703	+	263	118476155	-	BALH_0402	-	TerC family integral membrane protein
378	 34.62	0	459812..461443	+	543	118476156	-	BALH_0403	-	hypothetical protein
379	 34.26	0	461462..462544	+	360	118476157	-	BALH_0404	-	tellurite resistance protein
380	 38.25	0	462580..465246	-	888	118476158	pacL	BALH_0405	-	cation-transporting ATPase A, P type
381	 32.89	0	465434..465658	-	74	118476159	-	BALH_0406	-	hypothetical protein
382	 37.14	0	465772..466296	+	174	118476160	-	BALH_0407	-	protein tyrosine phosphatase
383	 35.08	0	466350..466865	+	171	118476161	-	BALH_0408	-	hypothetical protein
384	 36.55	0	466872..467741	+	289	118476162	rbn	BALH_0409	-	ribonuclease BN
385	 36.97	0	467927..469852	-	641	118476163	-	BALH_0410	-	cation-transporting ATPase, P-type
386	 35.02	0	470123..471073	+	316	118476164	-	BALH_0411	-	DMT family permease
387	 37.00	0	471194..471874	+	226	118476165	-	BALH_0412	-	hypothetical protein
388	 32.03	-1	472131..472667	+	178	118476166	sipS	BALH_0413	-	signal peptidase I
389	 32.94	0	472710..475472	-	920	118476167	-	BALH_0414	-	hypothetical protein
390	 36.52	0	475948..476544	+	198	118476168	-	BALH_0415	-	DedA family protein
391	 38.00	0	476553..476981	-	142	118476169	-	BALH_0416	-	DMT family permease
392	 36.93	0	477439..477855	-	138	118476170	-	BALH_0417	-	general stress protein 26
393	 37.18	0	478025..479089	+	354	118476171	-	BALH_0418	-	calcium/proton antiporter
394	 35.34	0	479171..479968	+	265	118476172	-	BALH_0419	-	hypothetical protein
395	 37.68	0	480003..481130	-	375	118476173	-	BALH_0420	-	radical SAM superfamily oxidoreductase
396	 27.32	-2	481344..481526	+	60	118476174	-	BALH_0421	-	hypothetical protein
397	 39.73	+1	481675..483252	+	525	118476175	fumA	BALH_0422	-	fumarase
398	 34.71	0	483361..484161	+	266	118476176	-	BALH_0423	-	polysaccharide deacetylase
399	 35.39	0	484209..485084	+	291	118476177	alkA	BALH_0424	-	DNA-3-methyladenine glycosylase II
400	 37.32	0	485095..486474	+	459	118476178	trmA	BALH_0425	-	tRNA (uracil-5-)-methyltransferase
401	 34.53	0	486516..487268	+	250	118476179	truA	BALH_0426	-	tRNA pseudouridine synthase A
402	 34.19	0	487608..489011	-	467	118476180	rocR	BALH_0427	-	arginine utilization regulatory protein
403	 35.69	0	489286..489540	+	84	118476181	-	BALH_0428	-	hypothetical protein
404	 37.05	0	489589..491067	+	492	118476182	rocE	BALH_0430	-	amino acid permease
405	 39.15	+1	491115..492437	+	440	118476183	argE	BALH_0431	-	acetylornithine deacetylase
406	 35.63	0	492537..493232	-	231	118476184	-	BALH_0432	-	transcriptional regulator
407	 33.33	0	493208..493522	-	104	118476185	-	BALH_0433	-	hypothetical protein
408	 34.97	0	493320..493931	+	203	118476186	-	BALH_0434	-	hypothetical protein
409	 33.04	0	494227..494568	-	113	118476187	-	BALH_0435	-	hypothetical protein
410	 35.27	0	494745..495674	-	309	118476188	glsA	BALH_0436	-	glutaminase
411	 38.29	0	495981..497492	+	503	118476189	nagE	BALH_0438	-	PTS system, N-acetylglucosamine-specific IIBC component
412	 34.36	0	497719..498984	+	421	118476190	pbpX	BALH_0439	-	penicillin-binding protein
413	 30.10	-1	499222..499623	+	133	118476191	-	BALH_0440	-	hypothetical protein
414	 40.33	+1	499592..499834	+	80	118476192	-	BALH_0441	-	hypothetical protein
415	 35.70	0	499791..501395	+	534	118476193	-	BALH_0442	-	glycosyltransferase, involved in cell wall biogenesis
416	 35.18	0	501385..502629	+	414	118476194	wecC	BALH_0443	-	UDP-glucose/GDP-mannose dehydrogenase family protein
417	 36.75	0	502626..503591	+	321	118476195	galE	BALH_0444	-	UDP-glucose 4-epimerase
418	 37.83	0	503572..505128	+	518	118476196	-	BALH_0445	-	glycosyltransferase, involved in cell wall biogenesis
419	 36.07	0	505453..507717	+	754	118476197	pflB	BALH_0446	-	formate acetyltransferase
420	 33.88	0	507787..508518	+	243	118476198	pflA	BALH_0447	-	formate acetyltransferase activating enzyme
421	 34.28	0	508931..510097	+	388	118476199	ugtP	BALH_0448	-	diacylglycerol glucosyltransferase
422	 34.77	0	510691..511248	-	185	118476200	-	BALH_0449	-	hypothetical protein
423	 37.93	0	511490..512620	-	376	118476201	hutI	BALH_0450	-	imidazolonepropionase
424	 37.14	0	512761..513705	-	314	118476202	-	BALH_0451	-	NAD-dependent epimerase/dehydratase family protein
425	 31.12	-1	513748..514560	+	270	118476203	recX	BALH_0452	-	recombination regulator RecX
426	 34.91	0	514570..514887	+	105	118476204	-	BALH_0453	-	transcriptional regulator
427	 34.83	0	515422..515688	+	88	118476205	-	BALH_0454	-	hypothetical protein
428	 37.61	0	515713..516693	-	326	118476206	-	BALH_0455	-	hypothetical protein
429	 37.16	0	516843..517940	+	365	118476207	mutY	BALH_0456	-	A/G-specific DNA-adenine glycosylase
430	 33.78	0	518128..518352	-	74	118476208	-	BALH_0457	-	hypothetical protein
431	 37.46	0	518444..518758	+	104	118476209	-	BALH_0458	-	small acid-soluble protein gamma type
432	 31.80	-1	518947..519207	+	86	118476210	-	BALH_0459	-	hypothetical protein
433	 33.71	0	519450..519980	+	176	118476211	-	BALH_0460	-	hypothetical protein
434	 36.46	0	520035..521795	+	586	118476212	-	BALH_0461	-	ABC transporter, ATP-binding and permease component
435	 33.61	0	521810..522898	-	362	118476213	-	BALH_0462	-	hypothetical protein
436	 38.38	0	523159..527595	-	1478	118476214	gltB	BALH_0463	-	glutamate synthase (NADPH) large subunit / glutamate synthase (ferredoxin)
437	 40.77	+1	527794..529098	-	434	118476215	hemL	BALH_0464	-	glutamate-1-semialdehyde aminotransferase
438	 35.50	0	529220..530233	+	337	118476216	drrA	BALH_0465	-	daunorubicin resistance, ATP-binding protein
439	 32.84	0	530208..531017	+	269	118476217	-	BALH_0466	-	daunorubicin resistance ABC transporter, permease component
440	 36.06	0	531001..531807	+	268	118476218	-	BALH_0467	-	ABC transporter permease
441	 37.63	0	532320..532784	+	154	118476219	bcp	BALH_0468	-	hypothetical protein
442	 38.16	0	533077..533511	+	144	118476220	perR	BALH_0469	-	peroxide operon regulator
443	 38.68	0	540989..541717	+	242	118476221	-	BALH_0472	-	hypothetical protein
444	 37.62	0	541791..542303	+	170	118476222	-	BALH_0473	-	MutT/NUDIX family protein
445	 38.74	0	542730..542951	+	73	118476223	-	BALH_0474	-	hypothetical protein
446	 33.33	0	543244..543426	-	60	118476224	-	BALH_0475	-	hypothetical protein
447	 27.31	-2	543619..544581	+	320	118476225	-	BALH_0476	-	hypothetical protein
448	 31.24	-1	544592..545881	+	429	118476226	-	BALH_0477	-	hypothetical protein
449	 27.05	-2	545904..546731	+	275	118476227	-	BALH_0478	-	nitroreductase
450	 25.08	-2	546724..548370	+	548	118476228	-	BALH_0479	-	ABC transporter, ATP-binding and permease component
451	 29.88	-1	548367..549380	+	337	118476229	-	BALH_0480	-	hypothetical protein
452	 26.84	-2	549555..550016	+	153	118476230	-	BALH_0481	-	hypothetical protein
453	 34.10	0	551040..551825	+	261	118476231	mrcA	BALH_0482	-	penicillin-binding protein 1A
454	 33.03	0	552007..552663	+	218	118476232	bdbD	BALH_0483	-	thiol-disulfide oxidoreductase
455	 30.53	-1	553132..554700	+	522	118476233	-	BALH_0484	-	transposase
456	 39.20	+1	554949..556091	+	380	118476234	-	BALH_0485	-	iron-sulfur cluster-binding protein
457	 35.59	0	556136..557023	+	295	118476235	-	BALH_0486	-	hypothetical protein
458	 32.92	0	557082..557570	+	162	118476236	cspR	BALH_0487	-	RNA methyltransferase
459	 30.19	-1	557698..559767	+	689	118476237	-	BALH_0488	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
460	 37.39	0	560159..562054	+	631	118476238	prkA	BALH_0489	-	serine protein kinase
461	 36.31	0	562500..563675	+	391	118476239	-	BALH_0490	-	hypothetical protein
462	 31.95	-1	563763..567155	+	1130	118476240	-	BALH_0491	-	internalin protein
463	 32.34	0	567598..568098	+	166	118476241	-	BALH_0492	-	acetyltransferase
464	 36.17	0	568304..569923	-	539	118476242	opuD	BALH_0494	-	glycine betaine transporter
465	 34.75	0	570123..573020	+	965	118476243	colA	BALH_0495	-	collagenase ColA
466	 32.24	-1	573267..573815	+	182	118476244	-	BALH_0496	-	hypothetical protein
467	 38.22	0	573828..575402	+	524	118476245	-	BALH_0497	-	SPFH domain-containing protein/band 7 family protein
468	 34.24	0	575639..577615	+	658	118476246	cheW	BALH_0498	-	methyl-accepting chemotaxis protein
469	 34.51	0	577767..579377	+	536	118476247	citS	BALH_0499	-	sensor histidine kinase
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.