IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3910	 34.63	0	4337839..4338531	-	230	118479688	-	BALH_4122	-	DNA-binding response regulator
3911	 40.00	+1	4338874..4339068	+	64	118479689	-	BALH_4123	-	hypothetical protein
3912	 34.14	0	4339108..4340352	-	414	118479690	-	BALH_4124	-	SAM-dependent methyltransferase
3913	 36.45	0	4340397..4342256	-	619	118479691	-	BALH_4125	-	Na+/H+ antiporter
3914	 35.49	0	4342498..4342821	+	107	118479692	-	BALH_4126	-	heme-degrading monooxygenase IsdG
3915	 33.59	0	4342887..4343651	-	254	118479693	-	BALH_4127	-	sortase B. cysteine peptidase. MEROPS family C60B
3916	 36.65	0	4343683..4344465	-	260	118479694	fhuC	BALH_4128	-	ferrichrome ABC transporter, ATP-binding protein
3917	 37.70	0	4344443..4345426	-	327	118479695	fhuB	BALH_4129	-	iron compound ABC transporter, permease component
3918	 34.69	0	4345454..4346335	-	293	118479696	fatB	BALH_4130	-	iron compound ABC transporter, iron compound-binding protein
3919	 34.42	0	4346405..4349266	-	953	118479697	-	BALH_4131	-	NEAT family protein
3920	 34.05	0	4349288..4349989	-	233	118479698	-	BALH_4132	-	hypothetical protein
3921	 35.34	0	4350488..4351930	-	480	118479699	brnQ	BALH_4133	-	branched-chain amino acid transport system II carrier protein
3922	 38.12	0	4352287..4352976	-	229	118479700	-	BALH_4134	-	pseudouridylate synthase
3923	 39.01	0	4353172..4355532	-	786	118479701	-	BALH_4135	-	recombination and DNA strand exchange inhibitor protein
3924	 37.86	0	4355552..4357273	-	573	118479702	-	BALH_4136	-	hypothetical protein
3925	 33.52	0	4357326..4357865	-	179	118479703	cvpA	BALH_4137	-	colicin V production protein
3926	 38.95	0	4357867..4358151	-	94	118479704	-	BALH_4138	-	hypothetical protein
3927	 38.56	0	4358183..4359196	+	337	118479705	rnhC	BALH_4139	-	ribonuclease HIII
3928	 40.66	+1	4360098..4361489	-	463	162382772	asnC	BALH_4140	-	asparaginyl-tRNA synthetase
3929	 39.78	+1	4362008..4364428	-	806	118479707	pheT	BALH_4141	-	phenylalanyl-tRNA synthetase subunit beta
3930	 39.90	+1	4364447..4365481	-	344	162382771	pheS	BALH_4142	-	phenylalanyl-tRNA synthetase subunit alpha
3931	 38.60	0	4365802..4366599	-	265	118479709	spoU	BALH_4143	-	23S rRNA methyltransferase
3932	 32.88	0	4366673..4366891	+	72	118479710	sspI	BALH_4144	-	small acid-soluble spore protein SspI
3933	 36.92	0	4366968..4367609	+	213	118479711	yqfF	BALH_4145	-	metal-dependent phosphohydrolase
3934	 33.06	0	4367737..4368459	+	240	118479712	-	BALH_4146	-	CAAX amino protease
3935	 30.37	-1	4368499..4369206	+	235	118479713	-	BALH_4147	-	CAAX amino terminal protease family protein
3936	 32.99	0	4370695..4371273	+	192	118479714	-	BALH_4149	-	hypothetical protein
3937	 29.13	-1	4371224..4371889	+	221	118479715	-	BALH_4150	-	hypothetical protein
3938	 37.78	0	4371909..4373708	-	599	118479716	emrB	BALH_4152	-	multidrug resistance protein B
3939	 37.61	0	4373721..4374398	-	225	118479717	emrA	BALH_4153	-	multidrug resistance protein A
3940	 36.08	0	4374672..4375289	+	205	118479718	-	BALH_4154	-	TetR family transcriptional regulator
3941	 40.82	+1	4375330..4376424	-	364	118479719	-	BALH_4155	-	M42 family deblocking aminopeptidase
3942	 31.97	-1	4376485..4376997	-	170	118479720	-	BALH_4156	-	hypothetical protein
3943	 38.66	0	4377447..4377803	-	118	118479721	rplT	BALH_4157	-	50S ribosomal protein L20
3944	 39.80	+1	4377841..4378041	-	66	118479722	rpmI	BALH_4158	-	50S ribosomal protein L35
3945	 38.78	0	4378063..4378650	-	195	118479723	infC	BALH_4159	-	translation initiation factor IF-3
3946	 38.74	0	4378960..4380900	-	646	118479724	thrS	BALH_4160	-	threonyl-tRNA synthetase
3947	 31.97	-1	4381205..4382086	-	293	118479725	-	BALH_4161	-	hypothetical protein
3948	 36.85	0	4382367..4383305	-	312	118479726	dnaI	BALH_4162	-	primosomal protein DnaI
3949	 38.66	0	4383339..4384745	-	468	118479727	dnaB	BALH_4163	-	replicative DNA helicase loader DnaB
3950	 36.52	0	4384873..4385343	-	156	118479728	-	BALH_4164	-	transcriptional regulator NrdR
3951	 41.98	+1	4385620..4386012	-	130	118479729	speD	BALH_4165	-	S-adenosylmethionine decarboxylase proenzyme
3952	 37.32	0	4386393..4387421	-	342	118479730	gap	BALH_4166	-	glyceraldehyde-3-phosphate dehydrogenase
3953	 35.76	0	4387531..4388148	-	205	118479731	coaE	BALH_4167	-	dephospho-CoA kinase
3954	 36.18	0	4388185..4388817	-	210	118479732	-	BALH_4169	-	hypothetical protein
3955	 38.39	0	4388890..4389720	-	276	118479733	mutM	BALH_4170	-	formamidopyrimidine-DNA glycosylase
3956	 36.51	0	4389733..4392408	-	891	118479734	polA	BALH_4171	-	DNA polymerase I
3957	 35.37	0	4392653..4394416	-	587	118479735	phoR	BALH_4172	-	PAS/PAC sensor signal transduction histidine kinase
3958	 35.97	0	4394409..4395128	-	239	118479736	phoP	BALH_4173	-	alkaline phosphatase synthesis response regulator
3959	 36.71	0	4395285..4395521	-	78	118479737	-	BALH_4174	-	hypothetical protein
3960	 34.81	0	4395810..4396283	-	157	118479738	-	BALH_4175	-	MaoC family protein
3961	 39.94	+1	4396500..4397438	-	312	118479739	mdh	BALH_4176	-	malate dehydrogenase
3962	 38.53	0	4397458..4398765	-	435	118479740	citC	BALH_4177	-	isocitrate dehydrogenase
3963	 36.81	0	4398911..4400059	-	382	118479741	citZ	BALH_4178	-	methylcitrate synthase
3964	 38.31	0	4400447..4400908	-	153	118479742	-	BALH_4179	-	hypothetical protein
3965	 37.00	0	4401471..4402589	+	372	118479743	-	BALH_4180	-	permease
3966	 40.77	+1	4403774..4405576	-	600	118479744	pykA	BALH_4181	-	pyruvate kinase
3967	 39.69	+1	4405585..4406544	-	319	118479745	pfk	BALH_4182	-	6-phosphofructokinase
3968	 39.38	+1	4406673..4407647	-	324	118479746	accA	BALH_4183	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
3969	 40.34	+1	4407635..4408504	-	289	118479747	accD	BALH_4184	-	acetyl-CoA carboxylase subunit beta
3970	 34.73	0	4408690..4409334	-	214	118479748	gntR	BALH_4185	-	GntR family transcriptional regulator
3971	 40.46	+1	4409349..4410653	-	434	118479749	mdh	BALH_4186	-	malate dehydrogenase
3972	 37.57	0	4410691..4414017	-	1108	118479750	dnaE	BALH_4187	-	DNA polymerase III DnaE
3973	 35.02	0	4414060..4414473	+	137	118479751	-	BALH_4188	-	hypothetical protein
3974	 34.10	0	4414449..4414973	+	174	118479752	-	BALH_4189	-	hypothetical protein
3975	 36.57	0	4415025..4416014	-	329	118479753	-	BALH_4190	-	DHH family phosphoesterase
3976	 33.12	0	4416864..4417805	-	313	118479754	-	BALH_4191	-	hypothetical protein
3977	 36.76	0	4418426..4419739	-	437	118479755	-	BALH_4192	-	CBS domain-containing protein
3978	 33.88	0	4419963..4420145	+	60	118479756	-	BALH_4193	-	hypothetical protein
3979	 36.11	0	4420186..4420869	-	227	118479757	-	BALH_4194	-	metal-dependent hydrolase
3980	 39.25	+1	4421019..4422116	+	365	118479758	pepQ	BALH_4195	-	Mername-AA019 peptidase
3981	 29.41	-1	4422145..4422501	-	118	118479759	-	BALH_4196	-	hypothetical protein
3982	 31.52	-1	4422990..4423817	+	275	118479760	-	BALH_4197	-	hypothetical protein
3983	 32.56	0	4424102..4425142	-	346	118479761	-	BALH_4198	-	hypothetical protein
3984	 35.29	0	4425081..4425590	-	169	118479762	-	BALH_4199	-	ECF subfamily RNA polymerase sigma factor
3985	 36.52	0	4425712..4426056	-	114	118479763	-	BALH_4200	-	hypothetical protein
3986	 33.08	0	4426059..4426847	-	262	118479764	-	BALH_4201	-	acetyltransferase
3987	 33.04	0	4426844..4427188	-	114	118479765	-	BALH_4202	-	hypothetical protein
3988	 28.76	-2	4427738..4428043	+	101	118479766	-	BALH_4203	-	transcriptional regulator
3989	 40.21	+1	4428517..4429650	-	377	118479767	ald	BALH_4204	-	L-alanine dehydrogenase
3990	 37.37	0	4429864..4430655	-	263	162382770	fabG	BALH_4205	-	3-ketoacyl-(acyl-carrier-protein) reductase
3991	 34.31	0	4430749..4431261	+	170	118479769	uspA	BALH_4206	-	universal stress protein
3992	 32.33	0	4431303..4431998	-	231	118479770	-	BALH_4207	-	hypothetical protein
3993	 33.33	0	4432070..4432273	+	67	118479771	-	BALH_4208	-	hypothetical protein
3994	 38.52	0	4432904..4434292	-	462	118479772	argH	BALH_4209	-	argininosuccinate lyase
3995	 37.94	0	4434289..4435524	-	411	118479773	argG	BALH_4210	-	argininosuccinate synthase
3996	 35.02	0	4435565..4435978	+	137	118479774	-	BALH_4211	-	hypothetical protein
3997	 32.88	0	4437059..4437721	+	220	118479775	-	BALH_4212	-	hypothetical protein
3998	 37.07	0	4437754..4438635	-	293	118479776	-	BALH_4213	-	protein EcsC
3999	 32.64	0	4438755..4439189	+	144	118479777	-	BALH_4214	-	MutT/Nudix family protein
4000	 40.70	+1	4439213..4440406	-	397	118479778	ackA	BALH_4215	-	acetate kinase
4001	 35.45	0	4440706..4441698	-	330	118479779	-	BALH_4216	-	adenine-specific DNA methyltransferase
4002	 39.72	+1	4441892..4442392	-	166	118479780	tpx	BALH_4217	-	thiol peroxidase (atypical 2-Cys peroxiredoxin)
4003	 37.63	0	4442527..4442922	-	131	118479781	-	BALH_4218	-	hypothetical protein
4004	 35.52	0	4442935..4443573	-	212	118479782	-	BALH_4219	-	hypothetical protein
4005	 35.04	0	4443764..4444582	+	272	118479783	ppnK	BALH_4220	-	inorganic polyphosphate/ATP-NAD kinase
4006	 38.96	0	4444817..4446433	-	538	118479784	-	BALH_4221	-	metal-dependent hydrolase
4007	 37.73	0	4446455..4446886	-	143	118479785	-	BALH_4222	-	PhnB protein
4008	 39.80	+1	4446989..4448581	-	530	118479786	acsA	BALH_4223	-	acetate--CoA ligase
4009	 42.93	+2	4448833..4449030	-	65	118479787	-	BALH_4224	-	small, acid-soluble spore protein
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.