IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3857	 34.67	0	4282564..4283160	-	198	118479635	engB	BALH_4062	-	GTPase EngB
3858	 38.78	0	4283157..4285541	-	794	118479636	lonA	BALH_4063	-	Lon-A peptidase
3859	 39.67	+1	4285671..4287344	-	557	118479637	lonB	BALH_4064	-	ATP-dependent protease LA
3860	 37.75	0	4287448..4288782	-	444	118479638	clpX	BALH_4065	-	ATP-dependent protease ATP-binding subunit
3861	 39.91	+1	4288972..4290249	-	425	118479639	tig	BALH_4066	-	trigger factor
3862	 34.13	0	4290559..4291557	-	332	118479640	-	BALH_4067	-	hypothetical protein
3863	 31.64	-1	4292291..4292704	-	137	118479641	-	BALH_4068	-	hypothetical protein
3864	 31.71	-1	4292860..4293474	+	204	118479642	-	BALH_4069	-	hypothetical protein
3865	 39.80	+1	4293559..4293759	-	66	118479643	-	BALH_4070	-	hypothetical protein
3866	 39.89	+1	4294850..4295383	-	177	118479644	-	BALH_4071	-	phosphoesterase
3867	 38.35	0	4295365..4295982	-	205	118479645	-	BALH_4072	-	hypothetical protein
3868	 41.06	+1	4295985..4296722	-	245	162382773	rph	BALH_4073	-	ribonuclease PH
3869	 37.14	0	4296852..4297901	-	349	118479647	gerM	BALH_4074	-	germination protein
3870	 38.30	0	4298032..4298856	-	274	118479648	murI	BALH_4075	-	glutamate racemase
3871	 34.02	0	4299052..4300506	-	484	118479649	bct	BALH_4076	-	tetracycline resistence protein, metal-tetracycline/H+ antiporter
3872	 38.38	0	4300735..4301427	+	230	118479650	-	BALH_4077	-	thiJ/PfpI family protein
3873	 30.64	-1	4301470..4302138	-	222	118479651	-	BALH_4078	-	TetR family transcriptional regulator
3874	 39.06	+1	4302265..4302927	-	220	118479652	-	BALH_4079	-	thiJ/PfpI family protein
3875	 34.38	0	4303068..4303355	-	95	118479653	-	BALH_4080	-	hypothetical protein
3876	 38.67	0	4303543..4303767	-	74	118479654	gerE	BALH_4081	-	germination protein
3877	 36.19	0	4303933..4305228	-	431	118479655	yieG	BALH_4082	-	xanthine/uracil permease family protein
3878	 39.29	+1	4305326..4306567	-	413	118479656	-	BALH_4083	-	deaminase
3879	 35.43	0	4307004..4307576	-	190	118479657	-	BALH_4084	-	DNA-binding protein
3880	 38.34	0	4307665..4308642	+	325	118479658	-	BALH_4086	-	hypothetical protein
3881	 36.49	0	4308786..4309451	+	221	118479659	aqpZ	BALH_4090	-	aquaporin Z
3882	 37.94	0	4309511..4309966	-	151	118479660	-	BALH_4091	-	BadM/Rrf2 family transcriptional regulator
3883	 33.50	0	4310061..4311281	-	406	118479661	-	BALH_4093	-	hypothetical protein
3884	 36.07	0	4311284..4312195	-	303	118479662	-	BALH_4094	-	ABC transporter, ATP-binding protein
3885	 36.23	0	4312513..4313340	+	275	118479663	-	BALH_4095	-	acid phosphatase
3886	 34.98	0	4313366..4314154	-	262	118479664	motB	BALH_4096	-	flagellar motor protein MotB
3887	 34.33	0	4314144..4314944	-	266	118479665	motA	BALH_4097	-	flagellar motor protein MotA
3888	 36.28	0	4315203..4315982	+	259	118479666	dacF	BALH_4098	-	M15B family D-Ala-D-Ala carboxypeptidase VanY
3889	 37.14	0	4316019..4316465	-	148	118479667	-	BALH_4099	-	4-hydroxybenzoyl-CoA thioesterase
3890	 41.09	+1	4316558..4317343	-	261	118479668	sdhB	BALH_4100	-	succinate dehydrogenase iron-sulfur subunit
3891	 40.41	+1	4317312..4319105	-	597	118479669	sdhA	BALH_4101	-	succinate dehydrogenase flavoprotein subunit
3892	 39.07	+1	4319119..4319745	-	208	118479670	sdhC	BALH_4102	-	succinate dehydrogenase subunit C
3893	 35.78	0	4320046..4320495	+	149	118479671	-	BALH_4103	-	hypothetical protein
3894	 35.85	0	4320610..4322394	-	594	118479672	uvrC	BALH_4104	-	excinuclease ABC subunit C
3895	 38.10	0	4322543..4322857	-	104	118479673	trxA	BALH_4105	-	thioredoxin
3896	 41.06	+1	4323069..4324064	-	331	118479674	etfA	BALH_4106	-	electron transfer flavoprotein, alpha subunit
3897	 37.60	0	4324083..4324856	-	257	118479675	etfB	BALH_4107	-	electron transfer flavoprotein, beta subunit
3898	 42.13	+1	4324935..4325741	-	268	118479676	phaB	BALH_4108	-	enoyl-CoA hydratase
3899	 37.60	0	4325723..4326355	-	210	118479677	-	BALH_4109	-	TetR family transcriptional regulator
3900	 38.42	0	4326417..4328165	-	582	118479678	lcfA	BALH_4110	-	acyl-CoA synthetase
3901	 47.79	+2	4328292..4329266	-	324	118479679	-	BALH_4112	-	triple helix repeat-containing collagen
3902	 33.82	0	4329575..4330609	+	344	118479680	fhuD	BALH_4113	-	iron compound ABC transporter, iron compound-binding protein
3903	 40.50	+1	4330617..4332653	+	678	118479681	fhuB	BALH_4114	-	iron-hydroxamate transporter permease subunit
3904	 40.67	+1	4332767..4333270	+	167	118479682	-	BALH_4115	-	hypothetical protein
3905	 33.77	0	4333334..4334026	-	230	118479683	-	BALH_4116	-	hypothetical protein
3906	 29.44	-1	4334053..4334925	-	290	118479684	-	BALH_4117	-	hypothetical protein
3907	 33.05	0	4334960..4335673	-	237	118479685	-	BALH_4119	-	hypothetical protein
3908	 31.71	-1	4335853..4336776	-	307	118479686	-	BALH_4120	-	bacitracin ABC transporter, ATP-binding protein
3909	 30.88	-1	4336902..4337837	-	311	118479687	resE	BALH_4121	-	sensor histidine kinase
3910	 34.63	0	4337839..4338531	-	230	118479688	-	BALH_4122	-	DNA-binding response regulator
3911	 40.00	+1	4338874..4339068	+	64	118479689	-	BALH_4123	-	hypothetical protein
3912	 34.14	0	4339108..4340352	-	414	118479690	-	BALH_4124	-	SAM-dependent methyltransferase
3913	 36.45	0	4340397..4342256	-	619	118479691	-	BALH_4125	-	Na+/H+ antiporter
3914	 35.49	0	4342498..4342821	+	107	118479692	-	BALH_4126	-	heme-degrading monooxygenase IsdG
3915	 33.59	0	4342887..4343651	-	254	118479693	-	BALH_4127	-	sortase B. cysteine peptidase. MEROPS family C60B
3916	 36.65	0	4343683..4344465	-	260	118479694	fhuC	BALH_4128	-	ferrichrome ABC transporter, ATP-binding protein
3917	 37.70	0	4344443..4345426	-	327	118479695	fhuB	BALH_4129	-	iron compound ABC transporter, permease component
3918	 34.69	0	4345454..4346335	-	293	118479696	fatB	BALH_4130	-	iron compound ABC transporter, iron compound-binding protein
3919	 34.42	0	4346405..4349266	-	953	118479697	-	BALH_4131	-	NEAT family protein
3920	 34.05	0	4349288..4349989	-	233	118479698	-	BALH_4132	-	hypothetical protein
3921	 35.34	0	4350488..4351930	-	480	118479699	brnQ	BALH_4133	-	branched-chain amino acid transport system II carrier protein
3922	 38.12	0	4352287..4352976	-	229	118479700	-	BALH_4134	-	pseudouridylate synthase
3923	 39.01	0	4353172..4355532	-	786	118479701	-	BALH_4135	-	recombination and DNA strand exchange inhibitor protein
3924	 37.86	0	4355552..4357273	-	573	118479702	-	BALH_4136	-	hypothetical protein
3925	 33.52	0	4357326..4357865	-	179	118479703	cvpA	BALH_4137	-	colicin V production protein
3926	 38.95	0	4357867..4358151	-	94	118479704	-	BALH_4138	-	hypothetical protein
3927	 38.56	0	4358183..4359196	+	337	118479705	rnhC	BALH_4139	-	ribonuclease HIII
3928	 40.66	+1	4360098..4361489	-	463	162382772	asnC	BALH_4140	-	asparaginyl-tRNA synthetase
3929	 39.78	+1	4362008..4364428	-	806	118479707	pheT	BALH_4141	-	phenylalanyl-tRNA synthetase subunit beta
3930	 39.90	+1	4364447..4365481	-	344	162382771	pheS	BALH_4142	-	phenylalanyl-tRNA synthetase subunit alpha
3931	 38.60	0	4365802..4366599	-	265	118479709	spoU	BALH_4143	-	23S rRNA methyltransferase
3932	 32.88	0	4366673..4366891	+	72	118479710	sspI	BALH_4144	-	small acid-soluble spore protein SspI
3933	 36.92	0	4366968..4367609	+	213	118479711	yqfF	BALH_4145	-	metal-dependent phosphohydrolase
3934	 33.06	0	4367737..4368459	+	240	118479712	-	BALH_4146	-	CAAX amino protease
3935	 30.37	-1	4368499..4369206	+	235	118479713	-	BALH_4147	-	CAAX amino terminal protease family protein
3936	 32.99	0	4370695..4371273	+	192	118479714	-	BALH_4149	-	hypothetical protein
3937	 29.13	-1	4371224..4371889	+	221	118479715	-	BALH_4150	-	hypothetical protein
3938	 37.78	0	4371909..4373708	-	599	118479716	emrB	BALH_4152	-	multidrug resistance protein B
3939	 37.61	0	4373721..4374398	-	225	118479717	emrA	BALH_4153	-	multidrug resistance protein A
3940	 36.08	0	4374672..4375289	+	205	118479718	-	BALH_4154	-	TetR family transcriptional regulator
3941	 40.82	+1	4375330..4376424	-	364	118479719	-	BALH_4155	-	M42 family deblocking aminopeptidase
3942	 31.97	-1	4376485..4376997	-	170	118479720	-	BALH_4156	-	hypothetical protein
3943	 38.66	0	4377447..4377803	-	118	118479721	rplT	BALH_4157	-	50S ribosomal protein L20
3944	 39.80	+1	4377841..4378041	-	66	118479722	rpmI	BALH_4158	-	50S ribosomal protein L35
3945	 38.78	0	4378063..4378650	-	195	118479723	infC	BALH_4159	-	translation initiation factor IF-3
3946	 38.74	0	4378960..4380900	-	646	118479724	thrS	BALH_4160	-	threonyl-tRNA synthetase
3947	 31.97	-1	4381205..4382086	-	293	118479725	-	BALH_4161	-	hypothetical protein
3948	 36.85	0	4382367..4383305	-	312	118479726	dnaI	BALH_4162	-	primosomal protein DnaI
3949	 38.66	0	4383339..4384745	-	468	118479727	dnaB	BALH_4163	-	replicative DNA helicase loader DnaB
3950	 36.52	0	4384873..4385343	-	156	118479728	-	BALH_4164	-	transcriptional regulator NrdR
3951	 41.98	+1	4385620..4386012	-	130	118479729	speD	BALH_4165	-	S-adenosylmethionine decarboxylase proenzyme
3952	 37.32	0	4386393..4387421	-	342	118479730	gap	BALH_4166	-	glyceraldehyde-3-phosphate dehydrogenase
3953	 35.76	0	4387531..4388148	-	205	118479731	coaE	BALH_4167	-	dephospho-CoA kinase
3954	 36.18	0	4388185..4388817	-	210	118479732	-	BALH_4169	-	hypothetical protein
3955	 38.39	0	4388890..4389720	-	276	118479733	mutM	BALH_4170	-	formamidopyrimidine-DNA glycosylase
3956	 36.51	0	4389733..4392408	-	891	118479734	polA	BALH_4171	-	DNA polymerase I
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.