IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3809	 38.07	0	4227616..4228755	+	379	118479587	nifS	BALH_4012	-	cysteine desulfurase
3810	 35.88	0	4228752..4229300	+	182	118479588	-	BALH_4013	-	transcriptional regulator
3811	 39.51	+1	4229382..4230029	+	215	118479589	-	BALH_4014	-	MOSC domain-containing protein
3812	 39.67	+1	4230111..4230962	-	283	118479590	pheA	BALH_4015	-	prephenate dehydratase
3813	 33.75	0	4231059..4232975	-	638	118479591	-	BALH_4017	-	ABC transporter, permease component
3814	 33.39	0	4233025..4234947	-	640	118479592	-	BALH_4019	-	ABC transporter, permease component
3815	 37.32	0	4234922..4235698	-	258	118479593	-	BALH_4020	-	ABC transporter, ATP-binding protein
3816	 34.22	0	4235792..4236916	-	374	118479594	-	BALH_4021	-	two-component sensor histidine kinase
3817	 37.99	0	4236864..4237571	-	235	118479595	-	BALH_4022	-	DNA-binding response regulator
3818	 42.35	+1	4237711..4238997	-	428	118479596	obgE	BALH_4023	-	GTPase ObgE
3819	 36.07	0	4238997..4239545	-	182	118479597	spo0B	BALH_4024	-	sporulation initiation phosphotransferase
3820	 45.36	+2	4239609..4239899	-	96	118479598	rpmA	BALH_4025	-	50S ribosomal protein L27
3821	 39.42	+1	4239903..4240247	-	114	118479599	-	BALH_4026	-	hypothetical protein
3822	 36.89	0	4240259..4240567	-	102	118479600	rplU	BALH_4027	-	50S ribosomal protein L21
3823	 34.63	0	4240737..4242125	-	462	118479601	-	BALH_4028	-	ribonuclease
3824	 33.45	0	4242193..4243053	-	286	118479602	spoIVFB	BALH_4029	-	sporulation factor SpoIVFB
3825	 34.34	0	4243046..4243939	-	297	118479603	spoIVFA	BALH_4030	-	stage IV sporulation protein FA
3826	 39.97	+1	4243926..4244723	-	265	118479604	minD	BALH_4031	-	septum site-determining protein MinD
3827	 38.57	0	4244726..4245412	-	228	118479605	minC	BALH_4032	-	septum formation inhibitor
3828	 32.60	0	4245448..4245993	-	181	118479606	mreD	BALH_4033	-	rod shape-determining protein MreD
3829	 36.83	0	4246008..4246865	-	285	118479607	mreC	BALH_4034	-	rod shape-determining protein MreC
3830	 40.39	+1	4246901..4247920	-	339	118479608	mreB	BALH_4035	-	rod shape-determining protein MreB
3831	 32.70	0	4248355..4249776	+	473	118479609	-	BALH_4036	-	hypothetical protein
3832	 30.52	-1	4249724..4252777	+	1017	118479610	-	BALH_4037	-	hypothetical protein
3833	 29.82	-1	4252807..4254570	+	587	118479611	-	BALH_4038	-	phage integrase
3834	 28.17	-2	4254554..4255309	+	251	118479612	-	BALH_4039	-	hypothetical protein
3835	 32.93	0	4255834..4256082	+	82	118479613	-	BALH_4040	-	hypothetical protein
3836	 29.53	-1	4256866..4258233	-	455	118479614	-	BALH_4041	-	hypothetical protein
3837	 29.96	-1	4258261..4260453	-	730	118479615	-	BALH_4042	-	ABC-type bacteriocin transporter family protein
3838	 38.71	0	4260663..4260848	-	61	118479616	-	BALH_4043	-	hypothetical protein
3839	 37.20	0	4260862..4261068	-	68	118479617	-	BALH_4044	-	hypothetical protein
3840	 36.10	0	4261977..4263098	+	373	118479618	-	BALH_4045	-	cell surface protein
3841	 43.93	+2	4263505..4264806	-	433	118479619	-	BALH_4046	-	exosporium protein
3842	 40.51	+1	4265842..4266468	-	208	118479620	radC	BALH_4047	-	DNA repair protein RadC
3843	 37.25	0	4266515..4267126	-	203	118479621	maf	BALH_4048	-	Maf-like protein
3844	 38.55	0	4267312..4268289	-	325	118479622	-	BALH_4049	-	stage II sporulation protein B
3845	 36.48	0	4268440..4269741	-	433	118479623	folC	BALH_4050	-	folylpolyglutamate synthase
3846	 40.10	+1	4269835..4272480	-	881	118479624	valS	BALH_4051	-	valyl-tRNA synthetase
3847	 37.62	0	4272876..4273901	-	341	118479625	-	BALH_4052	-	hypothetical protein
3848	 37.06	0	4273964..4274983	-	339	118479626	spoVID	BALH_4053	-	stage VI sporulation protein D
3849	 41.16	+1	4275064..4276353	-	429	118479627	hemL	BALH_4054	-	glutamate-1-semialdehyde aminotransferase
3850	 38.48	0	4276353..4277342	-	329	118479628	hemB	BALH_4055	-	delta-aminolevulinic acid dehydratase
3851	 38.38	0	4277363..4278115	-	250	118479629	hemD	BALH_4056	-	uroporphyrinogen-III synthase
3852	 39.89	+1	4278118..4279047	-	309	118479630	hemC	BALH_4057	-	porphobilinogen deaminase
3853	 33.33	0	4279063..4279941	-	292	118479631	hemX	BALH_4058	-	HemX family protein
3854	 37.23	0	4279914..4281248	-	444	118479632	hemA	BALH_4059	-	glutamyl-tRNA reductase
3855	 33.54	0	4281630..4282112	+	160	118479633	ohrR	BALH_4060	-	MarR family transcriptional regulator
3856	 41.25	+1	4282115..4282531	+	138	118479634	ohrA	BALH_4061	-	organic hydroperoxide resistance protein
3857	 34.67	0	4282564..4283160	-	198	118479635	engB	BALH_4062	-	GTPase EngB
3858	 38.78	0	4283157..4285541	-	794	118479636	lonA	BALH_4063	-	Lon-A peptidase
3859	 39.67	+1	4285671..4287344	-	557	118479637	lonB	BALH_4064	-	ATP-dependent protease LA
3860	 37.75	0	4287448..4288782	-	444	118479638	clpX	BALH_4065	-	ATP-dependent protease ATP-binding subunit
3861	 39.91	+1	4288972..4290249	-	425	118479639	tig	BALH_4066	-	trigger factor
3862	 34.13	0	4290559..4291557	-	332	118479640	-	BALH_4067	-	hypothetical protein
3863	 31.64	-1	4292291..4292704	-	137	118479641	-	BALH_4068	-	hypothetical protein
3864	 31.71	-1	4292860..4293474	+	204	118479642	-	BALH_4069	-	hypothetical protein
3865	 39.80	+1	4293559..4293759	-	66	118479643	-	BALH_4070	-	hypothetical protein
3866	 39.89	+1	4294850..4295383	-	177	118479644	-	BALH_4071	-	phosphoesterase
3867	 38.35	0	4295365..4295982	-	205	118479645	-	BALH_4072	-	hypothetical protein
3868	 41.06	+1	4295985..4296722	-	245	162382773	rph	BALH_4073	-	ribonuclease PH
3869	 37.14	0	4296852..4297901	-	349	118479647	gerM	BALH_4074	-	germination protein
3870	 38.30	0	4298032..4298856	-	274	118479648	murI	BALH_4075	-	glutamate racemase
3871	 34.02	0	4299052..4300506	-	484	118479649	bct	BALH_4076	-	tetracycline resistence protein, metal-tetracycline/H+ antiporter
3872	 38.38	0	4300735..4301427	+	230	118479650	-	BALH_4077	-	thiJ/PfpI family protein
3873	 30.64	-1	4301470..4302138	-	222	118479651	-	BALH_4078	-	TetR family transcriptional regulator
3874	 39.06	+1	4302265..4302927	-	220	118479652	-	BALH_4079	-	thiJ/PfpI family protein
3875	 34.38	0	4303068..4303355	-	95	118479653	-	BALH_4080	-	hypothetical protein
3876	 38.67	0	4303543..4303767	-	74	118479654	gerE	BALH_4081	-	germination protein
3877	 36.19	0	4303933..4305228	-	431	118479655	yieG	BALH_4082	-	xanthine/uracil permease family protein
3878	 39.29	+1	4305326..4306567	-	413	118479656	-	BALH_4083	-	deaminase
3879	 35.43	0	4307004..4307576	-	190	118479657	-	BALH_4084	-	DNA-binding protein
3880	 38.34	0	4307665..4308642	+	325	118479658	-	BALH_4086	-	hypothetical protein
3881	 36.49	0	4308786..4309451	+	221	118479659	aqpZ	BALH_4090	-	aquaporin Z
3882	 37.94	0	4309511..4309966	-	151	118479660	-	BALH_4091	-	BadM/Rrf2 family transcriptional regulator
3883	 33.50	0	4310061..4311281	-	406	118479661	-	BALH_4093	-	hypothetical protein
3884	 36.07	0	4311284..4312195	-	303	118479662	-	BALH_4094	-	ABC transporter, ATP-binding protein
3885	 36.23	0	4312513..4313340	+	275	118479663	-	BALH_4095	-	acid phosphatase
3886	 34.98	0	4313366..4314154	-	262	118479664	motB	BALH_4096	-	flagellar motor protein MotB
3887	 34.33	0	4314144..4314944	-	266	118479665	motA	BALH_4097	-	flagellar motor protein MotA
3888	 36.28	0	4315203..4315982	+	259	118479666	dacF	BALH_4098	-	M15B family D-Ala-D-Ala carboxypeptidase VanY
3889	 37.14	0	4316019..4316465	-	148	118479667	-	BALH_4099	-	4-hydroxybenzoyl-CoA thioesterase
3890	 41.09	+1	4316558..4317343	-	261	118479668	sdhB	BALH_4100	-	succinate dehydrogenase iron-sulfur subunit
3891	 40.41	+1	4317312..4319105	-	597	118479669	sdhA	BALH_4101	-	succinate dehydrogenase flavoprotein subunit
3892	 39.07	+1	4319119..4319745	-	208	118479670	sdhC	BALH_4102	-	succinate dehydrogenase subunit C
3893	 35.78	0	4320046..4320495	+	149	118479671	-	BALH_4103	-	hypothetical protein
3894	 35.85	0	4320610..4322394	-	594	118479672	uvrC	BALH_4104	-	excinuclease ABC subunit C
3895	 38.10	0	4322543..4322857	-	104	118479673	trxA	BALH_4105	-	thioredoxin
3896	 41.06	+1	4323069..4324064	-	331	118479674	etfA	BALH_4106	-	electron transfer flavoprotein, alpha subunit
3897	 37.60	0	4324083..4324856	-	257	118479675	etfB	BALH_4107	-	electron transfer flavoprotein, beta subunit
3898	 42.13	+1	4324935..4325741	-	268	118479676	phaB	BALH_4108	-	enoyl-CoA hydratase
3899	 37.60	0	4325723..4326355	-	210	118479677	-	BALH_4109	-	TetR family transcriptional regulator
3900	 38.42	0	4326417..4328165	-	582	118479678	lcfA	BALH_4110	-	acyl-CoA synthetase
3901	 47.79	+2	4328292..4329266	-	324	118479679	-	BALH_4112	-	triple helix repeat-containing collagen
3902	 33.82	0	4329575..4330609	+	344	118479680	fhuD	BALH_4113	-	iron compound ABC transporter, iron compound-binding protein
3903	 40.50	+1	4330617..4332653	+	678	118479681	fhuB	BALH_4114	-	iron-hydroxamate transporter permease subunit
3904	 40.67	+1	4332767..4333270	+	167	118479682	-	BALH_4115	-	hypothetical protein
3905	 33.77	0	4333334..4334026	-	230	118479683	-	BALH_4116	-	hypothetical protein
3906	 29.44	-1	4334053..4334925	-	290	118479684	-	BALH_4117	-	hypothetical protein
3907	 33.05	0	4334960..4335673	-	237	118479685	-	BALH_4119	-	hypothetical protein
3908	 31.71	-1	4335853..4336776	-	307	118479686	-	BALH_4120	-	bacitracin ABC transporter, ATP-binding protein
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.