IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3720	 37.72	0	4131771..4132340	-	189	118479498	nadD	BALH_3920	-	nicotinic acid mononucleotide adenylyltransferase
3721	 32.99	0	4132472..4132765	-	97	118479499	-	BALH_3921	-	hypothetical protein
3722	 37.53	0	4132771..4133604	-	277	118479500	aroE	BALH_3922	-	shikimate 5-dehydrogenase
3723	 35.68	0	4133620..4134726	-	368	118479501	-	BALH_3923	-	GTP-binding protein YqeH
3724	 36.45	0	4134730..4135242	-	170	118479502	-	BALH_3924	-	HAD superfamily hydrolase
3725	 36.76	0	4135792..4136580	-	262	118479503	psd	BALH_3925	-	phosphatidylserine decarboxylase
3726	 36.89	0	4136871..4137686	-	271	118479504	sigK	BALH_3926	-	sporulation sigma factor SigK
3727	 27.38	-2	4137737..4138660	+	307	118479505	-	BALH_3927	-	hypothetical protein
3728	 34.23	0	4138704..4140035	-	443	118479506	-	BALH_3928	-	hypothetical protein
3729	 32.31	0	4140078..4140272	-	64	118479507	-	BALH_3929	-	hypothetical protein
3730	 35.09	0	4140292..4141032	-	246	118479508	orfY	BALH_3930	-	transposase
3731	 33.60	0	4141167..4141544	-	125	118479509	orfX	BALH_3931	-	transposase
3732	 34.62	0	4141882..4142505	-	207	118479510	-	BALH_3932	-	nitroreductase family protein
3733	 31.18	-1	4142860..4143510	+	216	118479511	-	BALH_3933	-	GTP diphosphokinase
3734	 36.05	0	4143565..4144080	-	171	118479512	-	BALH_3934	-	hypothetical protein
3735	 37.30	0	4144087..4145472	-	461	118479513	-	BALH_3935	-	alkaline phosphatase
3736	 34.53	0	4145734..4146567	+	277	118479514	-	BALH_3936	-	acetyltransferase
3737	 33.67	0	4146583..4147467	+	294	118479515	-	BALH_3937	-	alpha/beta fold family hydrolase
3738	 36.73	0	4147509..4148009	-	166	118479516	-	BALH_3938	-	hypothetical protein
3739	 35.01	0	4148274..4148810	-	178	118479517	-	BALH_3939	-	hypothetical protein
3740	 36.01	0	4148829..4149539	-	236	118479518	-	BALH_3940	-	phosphoglycerate mutase family protein
3741	 37.88	0	4150181..4151413	-	410	118479519	-	BALH_3941	-	TolB domain-containing protein
3742	 37.18	0	4151642..4154395	+	917	118479520	vpr	BALH_3942	-	peptidase Vpr
3743	 37.89	0	4155133..4156887	+	584	118479521	phhA	BALH_3943	-	phenylalanine 4-monooxygenase
3744	 32.70	0	4156868..4157182	+	104	118479522	dcoH	BALH_3944	-	pterin-4-alpha-carbinolamine dehydratase
3745	 38.00	0	4157199..4158056	-	285	118479523	-	BALH_3945	-	glyoxalase family protein
3746	 35.56	0	4158078..4158482	-	134	118479524	-	BALH_3946	-	hypothetical protein
3747	 33.61	0	4158471..4159184	+	237	118479525	-	BALH_3947	-	MerR family transcriptional regulator
3748	 33.33	0	4159217..4159594	-	125	118479526	maoC	BALH_3948	-	maoC family protein
3749	 36.60	0	4159706..4160164	-	152	118479527	-	BALH_3949	-	acetyltransferase
3750	 37.77	0	4160221..4160784	-	187	118479528	-	BALH_3950	-	ribosomal-protein-alanine acetyltransferase
3751	 42.61	+2	4161034..4161432	-	132	118479529	-	BALH_3951	-	ankyrin repeat-containing protein
3752	 36.26	0	4161399..4162217	-	272	118479530	fhuC	BALH_3952	-	iron compound ABC transporter, ATP-binding protein
3753	 39.40	+1	4162204..4163241	-	345	118479531	fhuG	BALH_3954	-	iron compound ABC transporter, permease component
3754	 34.70	0	4163238..4164185	-	315	118479532	fhuD	BALH_3955	-	iron compound ABC transporter, iron compound-binding protein
3755	 37.56	0	4164696..4167299	-	867	118479533	-	BALH_3956	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
3756	 36.68	0	4167558..4168691	-	377	118479534	metC	BALH_3957	-	cystathionine beta-lyase
3757	 39.66	+1	4168695..4169642	-	315	118479535	cysM	BALH_3958	-	cystathionine beta-synthase (acetylserine-dependent)
3758	 36.49	0	4169701..4170396	-	231	118479536	mtnN	BALH_3959	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
3759	 34.76	0	4170411..4171112	-	233	118479537	-	BALH_3960	-	SAM-dependent methyltransferase
3760	 30.56	-1	4171186..4171401	+	71	118479538	-	BALH_3961	-	hypothetical protein
3761	 38.56	0	4171437..4172087	-	216	118479539	-	BALH_3962	-	hypothetical protein
3762	 35.78	0	4172204..4173958	-	584	118479540	pbp	BALH_3963	-	penicillin-binding protein
3763	 38.64	0	4174051..4174578	-	175	118479541	greA	BALH_3964	-	transcription elongation factor GreA
3764	 35.37	0	4174806..4175444	-	212	118479542	udk	BALH_3965	-	uridine kinase
3765	 38.10	0	4175462..4176742	-	426	118479543	-	BALH_3966	-	U32 family peptidase
3766	 37.10	0	4176761..4177690	-	309	118479544	-	BALH_3967	-	U32 family peptidase
3767	 36.92	0	4177698..4178339	-	213	118479545	-	BALH_3968	-	O-methyltransferase family protein
3768	 35.39	0	4178542..4179612	-	356	118479546	pabC	BALH_3969	-	aminodeoxychorismate lyase
3769	 36.11	0	4179830..4180117	-	95	118479547	-	BALH_3970	-	hypothetical protein
3770	 41.06	+1	4180121..4180534	-	137	118479548	-	BALH_3971	-	Holliday junction resolvase-like protein
3771	 39.39	+1	4180881..4183523	-	880	118479549	alaS	BALH_3972	-	alanyl-tRNA synthetase
3772	 29.57	-1	4184006..4184350	+	114	118479550	-	BALH_3973	-	hypothetical protein
3773	 36.56	0	4184389..4185474	-	361	118479551	-	BALH_3975	-	permease
3774	 38.30	0	4186343..4188679	-	778	118479552	recD	BALH_3976	-	ATP-dependent RecD/TraA family DNA helicase
3775	 36.92	0	4188775..4189443	-	222	118479553	-	BALH_3977	-	TPR repeat-containing protein
3776	 39.35	+1	4189545..4190675	-	376	118479554	trmU	BALH_3978	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
3777	 39.88	+1	4190677..4191822	-	381	118479555	-	BALH_3979	-	aminotransferase, class V
3778	 41.73	+1	4191858..4192274	-	138	118479556	-	BALH_3980	-	BadM/Rrf2 family transcriptional regulator
3779	 39.50	+1	4192567..4193847	+	426	162382774	-	BALH_3981	-	recombination factor protein RarA
3780	 38.20	0	4193877..4194533	+	218	118479558	rsfA	BALH_3982	-	prespore-specific transcriptional regulator
3781	 37.24	0	4194991..4195758	-	255	118479559	-	BALH_3983	-	hesA/moeB/thiF family protein
3782	 41.27	+1	4196108..4197883	-	591	118479560	aspS	BALH_3984	-	aspartyl-tRNA synthetase
3783	 39.48	+1	4197896..4199326	-	476	118479561	hisS	BALH_3985	-	histidyl-tRNA synthetase
3784	 35.86	0	4199522..4199719	-	65	118479562	-	BALH_3986	-	hypothetical protein
3785	 38.78	0	4199884..4200324	-	146	118479563	dtD	BALH_3987	-	D-tyrosyl-tRNA deacylase
3786	 36.81	0	4200342..4202525	-	727	118479564	relA	BALH_3988	-	GTP diphosphokinase
3787	 38.01	0	4202736..4203248	-	170	118479565	apt	BALH_3989	-	adenine phosphoribosyltransferase
3788	 38.34	0	4203296..4205692	-	798	118479566	recJ	BALH_3990	-	exonuclease RecJ
3789	 38.46	0	4205737..4206633	-	298	118479567	czcD	BALH_3991	-	cobalt-zinc-cadmium resistance protein
3790	 37.04	0	4206784..4209048	-	754	118479568	secDF	BALH_3992	-	bifunctional preprotein translocase subunit SecD/SecF
3791	 34.01	0	4209319..4209612	-	97	118479569	-	BALH_3993	-	hypothetical protein
3792	 37.37	0	4209778..4211337	+	519	118479570	spoVB	BALH_3994	-	stage V sporulation protein B
3793	 34.26	0	4211367..4212014	-	215	118479571	-	BALH_3995	-	hypothetical protein
3794	 36.78	0	4212538..4212798	-	86	118479572	yajC	BALH_3996	-	preprotein translocase subunit YajC
3795	 40.09	+1	4212826..4213965	-	379	118479573	tgt	BALH_3997	-	queuine tRNA-ribosyltransferase
3796	 38.40	0	4213978..4215042	-	354	118479574	queA	BALH_3998	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
3797	 41.25	+1	4215247..4216257	-	336	118479575	ruvB	BALH_3999	-	Holliday junction DNA helicase B
3798	 39.00	0	4216254..4216871	-	205	118479576	ruvA	BALH_4000	-	Holliday junction DNA helicase motor protein
3799	 34.39	0	4217060..4218004	+	314	118479577	fhuD	BALH_4001	-	iron compound ABC transporter, iron compound-binding protein
3800	 35.78	0	4218017..4218547	-	176	118479578	bofC	BALH_4002	-	bypass-of-forespore protein C
3801	 34.94	0	4218668..4219603	-	311	118479579	-	BALH_4004	-	DMT family permease
3802	 31.15	-1	4219665..4219985	-	106	118479580	-	BALH_4005	-	ArsR family transcriptional regulator
3803	 30.52	-1	4220404..4220865	+	153	118479581	-	BALH_4006	-	hypothetical protein
3804	 37.21	0	4220899..4221543	-	214	118479582	-	BALH_4007	-	forespore-specific protein
3805	 37.82	0	4221722..4223569	-	615	118479583	-	BALH_4008	-	lysM domain-containing protein
3806	 37.85	0	4223944..4225050	-	368	118479584	nadA	BALH_4009	-	quinolinate synthetase
3807	 39.95	+1	4225081..4225941	-	286	118479585	nadC	BALH_4010	-	nicotinate-nucleotide pyrophosphorylase
3808	 39.15	+1	4225934..4227463	-	509	118479586	nadB	BALH_4011	-	L-aspartate oxidase
3809	 38.07	0	4227616..4228755	+	379	118479587	nifS	BALH_4012	-	cysteine desulfurase
3810	 35.88	0	4228752..4229300	+	182	118479588	-	BALH_4013	-	transcriptional regulator
3811	 39.51	+1	4229382..4230029	+	215	118479589	-	BALH_4014	-	MOSC domain-containing protein
3812	 39.67	+1	4230111..4230962	-	283	118479590	pheA	BALH_4015	-	prephenate dehydratase
3813	 33.75	0	4231059..4232975	-	638	118479591	-	BALH_4017	-	ABC transporter, permease component
3814	 33.39	0	4233025..4234947	-	640	118479592	-	BALH_4019	-	ABC transporter, permease component
3815	 37.32	0	4234922..4235698	-	258	118479593	-	BALH_4020	-	ABC transporter, ATP-binding protein
3816	 34.22	0	4235792..4236916	-	374	118479594	-	BALH_4021	-	two-component sensor histidine kinase
3817	 37.99	0	4236864..4237571	-	235	118479595	-	BALH_4022	-	DNA-binding response regulator
3818	 42.35	+1	4237711..4238997	-	428	118479596	obgE	BALH_4023	-	GTPase ObgE
3819	 36.07	0	4238997..4239545	-	182	118479597	spo0B	BALH_4024	-	sporulation initiation phosphotransferase
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.