IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3697	 34.00	0	4107262..4108461	-	399	118479475	spoIV	BALH_3897	-	stage IV sporulation protein
3698	 36.71	0	4109040..4109483	-	147	118479476	-	BALH_3898	-	gatB/Yqey domain-containing protein
3699	 40.30	+1	4109499..4109699	-	66	118479477	rpsU	BALH_3899	-	30S ribosomal protein S21
3700	 37.47	0	4110004..4111356	-	450	118479478	-	BALH_3900	-	2-methylthioadenine synthetase
3701	 39.07	+1	4111363..4112112	-	249	118479479	-	BALH_3901	-	hypothetical protein
3702	 38.87	0	4112258..4113196	-	312	118479480	prmA	BALH_3902	-	ribosomal protein L11 methyltransferase
3703	 39.97	+1	4113225..4114385	-	386	118479481	dnaJ	BALH_3903	-	chaperone protein
3704	 39.92	+1	4114545..4116380	-	611	118479482	dnaK	BALH_3904	-	molecular chaperone DnaK
3705	 37.91	0	4116407..4117018	-	203	118479483	grepE	BALH_3905	-	heat shock protein
3706	 36.28	0	4117088..4118104	-	338	118479484	hrcA	BALH_3906	-	heat-inducible transcription repressor
3707	 35.70	0	4118238..4119377	-	379	118479485	hemN	BALH_3907	-	coproporphyrinogen III oxidase
3708	 37.94	0	4119936..4121759	-	607	118479486	lepA	BALH_3908	-	GTP-binding protein LepA
3709	 38.25	0	4121970..4122335	-	121	118479487	-	BALH_3909	-	hypothetical protein
3710	 38.21	0	4122332..4123438	-	368	162382775	gpr	BALH_3910	-	germination protease
3711	 40.26	+1	4123575..4123877	+	100	118479489	rpsT	BALH_3911	-	30S ribosomal protein S20
3712	 35.41	0	4123960..4124970	-	336	118479490	holA	BALH_3912	-	DNA polymerase III subunit delta
3713	 36.39	0	4125480..4127801	-	773	118479491	comEC	BALH_3913	-	DNA internalization-related competence protein
3714	 34.92	0	4127816..4128382	-	188	118479492	comEB	BALH_3914	-	comE operon protein 2
3715	 37.83	0	4128437..4129036	-	199	118479493	comEA	BALH_3915	-	comE operon protein 1
3716	 36.34	0	4129144..4129941	+	265	118479494	comER	BALH_3916	-	late competence protein ComER
3717	 37.47	0	4130113..4130862	-	249	118479495	-	BALH_3917	-	methyltransferase
3718	 39.22	+1	4130859..4131215	-	118	118479496	-	BALH_3918	-	iojap-related protein
3719	 35.48	0	4131212..4131958	-	248	118479497	-	BALH_3919	-	HAD superfamily hydrolase
3720	 37.72	0	4131771..4132340	-	189	118479498	nadD	BALH_3920	-	nicotinic acid mononucleotide adenylyltransferase
3721	 32.99	0	4132472..4132765	-	97	118479499	-	BALH_3921	-	hypothetical protein
3722	 37.53	0	4132771..4133604	-	277	118479500	aroE	BALH_3922	-	shikimate 5-dehydrogenase
3723	 35.68	0	4133620..4134726	-	368	118479501	-	BALH_3923	-	GTP-binding protein YqeH
3724	 36.45	0	4134730..4135242	-	170	118479502	-	BALH_3924	-	HAD superfamily hydrolase
3725	 36.76	0	4135792..4136580	-	262	118479503	psd	BALH_3925	-	phosphatidylserine decarboxylase
3726	 36.89	0	4136871..4137686	-	271	118479504	sigK	BALH_3926	-	sporulation sigma factor SigK
3727	 27.38	-2	4137737..4138660	+	307	118479505	-	BALH_3927	-	hypothetical protein
3728	 34.23	0	4138704..4140035	-	443	118479506	-	BALH_3928	-	hypothetical protein
3729	 32.31	0	4140078..4140272	-	64	118479507	-	BALH_3929	-	hypothetical protein
3730	 35.09	0	4140292..4141032	-	246	118479508	orfY	BALH_3930	-	transposase
3731	 33.60	0	4141167..4141544	-	125	118479509	orfX	BALH_3931	-	transposase
3732	 34.62	0	4141882..4142505	-	207	118479510	-	BALH_3932	-	nitroreductase family protein
3733	 31.18	-1	4142860..4143510	+	216	118479511	-	BALH_3933	-	GTP diphosphokinase
3734	 36.05	0	4143565..4144080	-	171	118479512	-	BALH_3934	-	hypothetical protein
3735	 37.30	0	4144087..4145472	-	461	118479513	-	BALH_3935	-	alkaline phosphatase
3736	 34.53	0	4145734..4146567	+	277	118479514	-	BALH_3936	-	acetyltransferase
3737	 33.67	0	4146583..4147467	+	294	118479515	-	BALH_3937	-	alpha/beta fold family hydrolase
3738	 36.73	0	4147509..4148009	-	166	118479516	-	BALH_3938	-	hypothetical protein
3739	 35.01	0	4148274..4148810	-	178	118479517	-	BALH_3939	-	hypothetical protein
3740	 36.01	0	4148829..4149539	-	236	118479518	-	BALH_3940	-	phosphoglycerate mutase family protein
3741	 37.88	0	4150181..4151413	-	410	118479519	-	BALH_3941	-	TolB domain-containing protein
3742	 37.18	0	4151642..4154395	+	917	118479520	vpr	BALH_3942	-	peptidase Vpr
3743	 37.89	0	4155133..4156887	+	584	118479521	phhA	BALH_3943	-	phenylalanine 4-monooxygenase
3744	 32.70	0	4156868..4157182	+	104	118479522	dcoH	BALH_3944	-	pterin-4-alpha-carbinolamine dehydratase
3745	 38.00	0	4157199..4158056	-	285	118479523	-	BALH_3945	-	glyoxalase family protein
3746	 35.56	0	4158078..4158482	-	134	118479524	-	BALH_3946	-	hypothetical protein
3747	 33.61	0	4158471..4159184	+	237	118479525	-	BALH_3947	-	MerR family transcriptional regulator
3748	 33.33	0	4159217..4159594	-	125	118479526	maoC	BALH_3948	-	maoC family protein
3749	 36.60	0	4159706..4160164	-	152	118479527	-	BALH_3949	-	acetyltransferase
3750	 37.77	0	4160221..4160784	-	187	118479528	-	BALH_3950	-	ribosomal-protein-alanine acetyltransferase
3751	 42.61	+2	4161034..4161432	-	132	118479529	-	BALH_3951	-	ankyrin repeat-containing protein
3752	 36.26	0	4161399..4162217	-	272	118479530	fhuC	BALH_3952	-	iron compound ABC transporter, ATP-binding protein
3753	 39.40	+1	4162204..4163241	-	345	118479531	fhuG	BALH_3954	-	iron compound ABC transporter, permease component
3754	 34.70	0	4163238..4164185	-	315	118479532	fhuD	BALH_3955	-	iron compound ABC transporter, iron compound-binding protein
3755	 37.56	0	4164696..4167299	-	867	118479533	-	BALH_3956	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
3756	 36.68	0	4167558..4168691	-	377	118479534	metC	BALH_3957	-	cystathionine beta-lyase
3757	 39.66	+1	4168695..4169642	-	315	118479535	cysM	BALH_3958	-	cystathionine beta-synthase (acetylserine-dependent)
3758	 36.49	0	4169701..4170396	-	231	118479536	mtnN	BALH_3959	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
3759	 34.76	0	4170411..4171112	-	233	118479537	-	BALH_3960	-	SAM-dependent methyltransferase
3760	 30.56	-1	4171186..4171401	+	71	118479538	-	BALH_3961	-	hypothetical protein
3761	 38.56	0	4171437..4172087	-	216	118479539	-	BALH_3962	-	hypothetical protein
3762	 35.78	0	4172204..4173958	-	584	118479540	pbp	BALH_3963	-	penicillin-binding protein
3763	 38.64	0	4174051..4174578	-	175	118479541	greA	BALH_3964	-	transcription elongation factor GreA
3764	 35.37	0	4174806..4175444	-	212	118479542	udk	BALH_3965	-	uridine kinase
3765	 38.10	0	4175462..4176742	-	426	118479543	-	BALH_3966	-	U32 family peptidase
3766	 37.10	0	4176761..4177690	-	309	118479544	-	BALH_3967	-	U32 family peptidase
3767	 36.92	0	4177698..4178339	-	213	118479545	-	BALH_3968	-	O-methyltransferase family protein
3768	 35.39	0	4178542..4179612	-	356	118479546	pabC	BALH_3969	-	aminodeoxychorismate lyase
3769	 36.11	0	4179830..4180117	-	95	118479547	-	BALH_3970	-	hypothetical protein
3770	 41.06	+1	4180121..4180534	-	137	118479548	-	BALH_3971	-	Holliday junction resolvase-like protein
3771	 39.39	+1	4180881..4183523	-	880	118479549	alaS	BALH_3972	-	alanyl-tRNA synthetase
3772	 29.57	-1	4184006..4184350	+	114	118479550	-	BALH_3973	-	hypothetical protein
3773	 36.56	0	4184389..4185474	-	361	118479551	-	BALH_3975	-	permease
3774	 38.30	0	4186343..4188679	-	778	118479552	recD	BALH_3976	-	ATP-dependent RecD/TraA family DNA helicase
3775	 36.92	0	4188775..4189443	-	222	118479553	-	BALH_3977	-	TPR repeat-containing protein
3776	 39.35	+1	4189545..4190675	-	376	118479554	trmU	BALH_3978	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
3777	 39.88	+1	4190677..4191822	-	381	118479555	-	BALH_3979	-	aminotransferase, class V
3778	 41.73	+1	4191858..4192274	-	138	118479556	-	BALH_3980	-	BadM/Rrf2 family transcriptional regulator
3779	 39.50	+1	4192567..4193847	+	426	162382774	-	BALH_3981	-	recombination factor protein RarA
3780	 38.20	0	4193877..4194533	+	218	118479558	rsfA	BALH_3982	-	prespore-specific transcriptional regulator
3781	 37.24	0	4194991..4195758	-	255	118479559	-	BALH_3983	-	hesA/moeB/thiF family protein
3782	 41.27	+1	4196108..4197883	-	591	118479560	aspS	BALH_3984	-	aspartyl-tRNA synthetase
3783	 39.48	+1	4197896..4199326	-	476	118479561	hisS	BALH_3985	-	histidyl-tRNA synthetase
3784	 35.86	0	4199522..4199719	-	65	118479562	-	BALH_3986	-	hypothetical protein
3785	 38.78	0	4199884..4200324	-	146	118479563	dtD	BALH_3987	-	D-tyrosyl-tRNA deacylase
3786	 36.81	0	4200342..4202525	-	727	118479564	relA	BALH_3988	-	GTP diphosphokinase
3787	 38.01	0	4202736..4203248	-	170	118479565	apt	BALH_3989	-	adenine phosphoribosyltransferase
3788	 38.34	0	4203296..4205692	-	798	118479566	recJ	BALH_3990	-	exonuclease RecJ
3789	 38.46	0	4205737..4206633	-	298	118479567	czcD	BALH_3991	-	cobalt-zinc-cadmium resistance protein
3790	 37.04	0	4206784..4209048	-	754	118479568	secDF	BALH_3992	-	bifunctional preprotein translocase subunit SecD/SecF
3791	 34.01	0	4209319..4209612	-	97	118479569	-	BALH_3993	-	hypothetical protein
3792	 37.37	0	4209778..4211337	+	519	118479570	spoVB	BALH_3994	-	stage V sporulation protein B
3793	 34.26	0	4211367..4212014	-	215	118479571	-	BALH_3995	-	hypothetical protein
3794	 36.78	0	4212538..4212798	-	86	118479572	yajC	BALH_3996	-	preprotein translocase subunit YajC
3795	 40.09	+1	4212826..4213965	-	379	118479573	tgt	BALH_3997	-	queuine tRNA-ribosyltransferase
3796	 38.40	0	4213978..4215042	-	354	118479574	queA	BALH_3998	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.