IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
308	 40.52	+1	379719..380414	-	231	118476086	-	BALH_0329	-	hypothetical protein
309	 39.46	+1	380429..381538	-	369	118476087	-	BALH_0330	-	mandelate racemase/muconate lactonizing enzyme family protein
310	 34.12	0	381631..382902	+	423	118476088	-	BALH_0331	-	hypothetical protein
311	 37.13	0	382891..384312	-	473	118476089	nhaC	BALH_0332	-	Na+/H+ antiporter
312	 38.38	0	384559..385707	+	382	118476090	amhX	BALH_0333	-	amidohydrolase
313	 33.99	0	385859..386467	+	202	118476091	-	BALH_0334	-	methyltransferase
314	 40.80	+1	386514..388040	-	508	118476092	ahpF	BALH_0335	-	alkyl hydroperoxide reductase, subunit F
315	 40.43	+1	388055..388618	-	187	118476093	ahpC	BALH_0336	-	alkyl hydroperoxide reductase, subunit C
316	 35.69	0	389209..390438	+	409	118476094	mtrK	BALH_0337	-	5-methylribose kinase
317	 38.59	0	390448..391494	+	348	118476095	-	BALH_0338	-	translation initiation factor IF-2B subunit alpha
318	 39.20	+1	391543..392190	+	215	118476096	fucA	BALH_0339	-	L-fuculose phosphate aldolase
319	 38.59	0	392231..393238	-	335	118476097	fhuG	BALH_0340	-	iron compound ABC transporter, permease component
320	 39.48	+1	393235..394275	-	346	118476098	fhuB	BALH_0341	-	ferrichrome transport system, permease component
321	 32.79	0	394324..395241	-	305	118476099	fhuD	BALH_0342	-	ferrichrome-binding, periplasmic protein
322	 33.52	0	395574..396623	+	349	118476100	trxB	BALH_0343	-	thioredoxin reductase
323	 33.33	0	396820..397188	-	122	118476101	-	BALH_0344	-	hypothetical protein
324	 30.42	-1	397370..397609	+	79	118476102	-	BALH_0345	-	hypothetical protein
325	 35.63	0	397845..398366	+	173	118476103	cotB	BALH_0346	-	spore coat protein B
326	 29.60	-1	398999..399667	+	222	118476104	-	BALH_0347	-	hypothetical protein
327	 34.43	0	399899..401170	+	423	118476105	-	BALH_0348	-	hypothetical protein
328	 33.59	0	402043..402426	+	127	118476106	-	BALH_0349	-	hypothetical protein
329	 34.75	0	402454..403161	-	235	118476107	-	BALH_0350	-	metal-dependent hydrolase
330	 37.71	0	403426..404544	+	372	118476108	-	BALH_0351	-	hypothetical protein
331	 32.82	0	404666..405448	+	260	118476109	-	BALH_0352	-	hypothetical protein
332	 37.83	0	405463..406773	-	436	118476110	-	BALH_0354	-	MFS family benzoate membrane transporter
333	 36.10	0	406908..408497	-	529	118476111	-	BALH_0355	-	oxidoreductase, with Rieske iron-sulfur protein 2Fe-2S subunit
334	 37.66	0	409015..410100	+	361	118476112	-	BALH_0356	-	fatty acid desaturase
335	 37.46	0	410153..410854	-	233	118476113	glnP	BALH_0357	-	amino acid ABC transporter, permease component
336	 34.21	0	410989..411783	-	264	118476114	glnH	BALH_0358	-	amino acid ABC transporter, periplasmic-binding protein
337	 38.45	0	411905..412627	-	240	118476115	glnQ	BALH_0359	-	amino acid ABC transporter, ATP-binding protein
338	 37.51	0	412838..414130	+	430	118476116	mcpA	BALH_0360	-	methyl-accepting chemotaxis protein
339	 28.32	-2	414275..414733	+	152	118476117	argR	BALH_0361	-	ArgR family transcriptional regulator
340	 34.79	0	415002..416234	+	410	118476118	arcA	BALH_0362	-	arginine deiminase
341	 35.14	0	416265..417263	+	332	118476119	arcB	BALH_0363	-	ornithine carbamoyltransferase
342	 36.28	0	417354..418778	+	474	118476120	arcD	BALH_0365	-	arginine-ornithine antiporter
343	 36.24	0	418816..419778	+	320	118476121	arcC	BALH_0366	-	carbamate kinase
344	 31.30	-1	419978..420667	+	229	118476122	-	BALH_0367	-	Crp family transcriptional regulator
345	 27.01	-2	420696..421502	+	268	118476123	-	BALH_0368	-	hypothetical protein
346	 34.36	0	422021..423781	+	586	118476124	-	BALH_0369	-	alpha-glucosidase
347	 36.63	0	423988..425625	+	545	118476125	ptsG	BALH_0370	-	PTS system glucose-specific IIBC component
348	 33.21	0	425618..426421	+	267	118476126	-	BALH_0371	-	endonuclease/exonuclease/phosphatase family protein
349	 34.85	0	426716..429553	+	945	118476127	-	BALH_0372	-	hypothetical protein
350	 36.39	0	429594..431783	-	729	118476128	topB	BALH_0373	-	DNA topoisomerase III
351	 40.20	+1	432183..432998	+	271	118476129	thiM	BALH_0374	-	hydroxyethylthiazole kinase
352	 38.79	0	433015..433674	+	219	118476130	thiE	BALH_0375	-	thiamine-phosphate pyrophosphorylase
353	 38.96	0	433790..435103	-	437	118476131	dcuA	BALH_0376	-	anaerobic C4-dicarboxylate transporter
354	 33.90	0	435593..437344	+	583	118476132	cheW	BALH_0377	-	methyl-accepting chemotaxis protein
355	 39.56	+1	437608..437928	+	106	118476133	-	BALH_0378	-	hypothetical protein
356	 36.34	0	437876..438673	+	265	118476134	-	BALH_0379	-	ABC transporter, permease component
357	 36.64	0	438670..439668	+	332	118476135	-	BALH_0380	-	ABC transporter, substrate-binding protein
358	 36.67	0	439665..440414	+	249	118476136	-	BALH_0381	-	ABC transporter, ATP-binding protein
359	 32.30	0	440482..441255	+	257	118476137	-	BALH_0382	-	hypothetical protein
360	 34.24	0	441560..442111	+	183	118476138	-	BALH_0383	-	ABC transporter, ATP-binding protein
361	 34.60	0	442153..443103	+	316	118476139	-	BALH_0384	-	ABC transporter, ATP-binding protein
362	 37.37	0	443559..445664	-	701	118476140	chiA	BALH_0385	-	glycosyl hydrolase family chitinase
363	 31.45	-1	445955..446326	+	123	118476141	-	BALH_0386	-	hypothetical protein
364	 31.43	-1	446337..446651	+	104	118476142	-	BALH_0387	-	thioredoxin
365	 37.80	0	446665..446910	+	81	118476143	-	BALH_0388	-	hypothetical protein
366	 31.97	-1	447153..447740	+	195	118476144	-	BALH_0389	-	TetR family transcriptional regulator
367	 36.17	0	447807..449039	+	410	118476145	-	BALH_0391	-	sugar transporter
368	 31.35	-1	449096..449347	+	83	118476146	-	BALH_0393	-	Cro/CI family transcriptional regulator
369	 35.98	0	449779..451062	-	427	118476147	-	BALH_0394	-	major facilitator superfamily permease
370	 36.76	0	451171..452484	-	437	118476148	-	BALH_0395	-	type I phosphodiesterase/nucleotide pyrophosphatase family protein
371	 36.13	0	453279..454709	+	476	162382786	proS	BALH_0396	-	prolyl-tRNA synthetase
372	 50.27	+2	454826..455764	-	312	118476150	-	BALH_0397	-	pentapeptide repeat-containing protein
373	 35.15	0	455968..456846	+	292	118476151	-	BALH_0398	-	ROK family protein
374	 36.36	0	456975..457568	+	197	118476152	terD	BALH_0399	-	TerD family tellurium resistance protein
375	 37.90	0	457589..458179	+	196	118476153	terD	BALH_0400	-	TerD family tellurium resistance protein
376	 39.03	+1	458260..458838	+	192	118476154	terD	BALH_0401	-	TerD family tellurium resistance protein
377	 34.47	0	458912..459703	+	263	118476155	-	BALH_0402	-	TerC family integral membrane protein
378	 34.62	0	459812..461443	+	543	118476156	-	BALH_0403	-	hypothetical protein
379	 34.26	0	461462..462544	+	360	118476157	-	BALH_0404	-	tellurite resistance protein
380	 38.25	0	462580..465246	-	888	118476158	pacL	BALH_0405	-	cation-transporting ATPase A, P type
381	 32.89	0	465434..465658	-	74	118476159	-	BALH_0406	-	hypothetical protein
382	 37.14	0	465772..466296	+	174	118476160	-	BALH_0407	-	protein tyrosine phosphatase
383	 35.08	0	466350..466865	+	171	118476161	-	BALH_0408	-	hypothetical protein
384	 36.55	0	466872..467741	+	289	118476162	rbn	BALH_0409	-	ribonuclease BN
385	 36.97	0	467927..469852	-	641	118476163	-	BALH_0410	-	cation-transporting ATPase, P-type
386	 35.02	0	470123..471073	+	316	118476164	-	BALH_0411	-	DMT family permease
387	 37.00	0	471194..471874	+	226	118476165	-	BALH_0412	-	hypothetical protein
388	 32.03	-1	472131..472667	+	178	118476166	sipS	BALH_0413	-	signal peptidase I
389	 32.94	0	472710..475472	-	920	118476167	-	BALH_0414	-	hypothetical protein
390	 36.52	0	475948..476544	+	198	118476168	-	BALH_0415	-	DedA family protein
391	 38.00	0	476553..476981	-	142	118476169	-	BALH_0416	-	DMT family permease
392	 36.93	0	477439..477855	-	138	118476170	-	BALH_0417	-	general stress protein 26
393	 37.18	0	478025..479089	+	354	118476171	-	BALH_0418	-	calcium/proton antiporter
394	 35.34	0	479171..479968	+	265	118476172	-	BALH_0419	-	hypothetical protein
395	 37.68	0	480003..481130	-	375	118476173	-	BALH_0420	-	radical SAM superfamily oxidoreductase
396	 27.32	-2	481344..481526	+	60	118476174	-	BALH_0421	-	hypothetical protein
397	 39.73	+1	481675..483252	+	525	118476175	fumA	BALH_0422	-	fumarase
398	 34.71	0	483361..484161	+	266	118476176	-	BALH_0423	-	polysaccharide deacetylase
399	 35.39	0	484209..485084	+	291	118476177	alkA	BALH_0424	-	DNA-3-methyladenine glycosylase II
400	 37.32	0	485095..486474	+	459	118476178	trmA	BALH_0425	-	tRNA (uracil-5-)-methyltransferase
401	 34.53	0	486516..487268	+	250	118476179	truA	BALH_0426	-	tRNA pseudouridine synthase A
402	 34.19	0	487608..489011	-	467	118476180	rocR	BALH_0427	-	arginine utilization regulatory protein
403	 35.69	0	489286..489540	+	84	118476181	-	BALH_0428	-	hypothetical protein
404	 37.05	0	489589..491067	+	492	118476182	rocE	BALH_0430	-	amino acid permease
405	 39.15	+1	491115..492437	+	440	118476183	argE	BALH_0431	-	acetylornithine deacetylase
406	 35.63	0	492537..493232	-	231	118476184	-	BALH_0432	-	transcriptional regulator
407	 33.33	0	493208..493522	-	104	118476185	-	BALH_0433	-	hypothetical protein
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.