IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3442	 36.71	0	3855767..3857068	-	433	118479220	-	BALH_3632	-	maltosaccharide ABC transporter, permease
3443	 37.29	0	3857133..3858446	-	437	118479221	-	BALH_3633	-	maltose-maltodextrin ABC-related solute binding protein
3444	 35.83	0	3858718..3860478	+	586	118479222	nplT	BALH_3634	-	neopullulanase
3445	 33.86	0	3860518..3862212	-	564	118479223	malL	BALH_3635	-	oligo-1,6-glucosidase
3446	 36.06	0	3862456..3863556	+	366	118479224	-	BALH_3636	-	sugar ABC transporter, ATP-binding protein
3447	 38.04	0	3863623..3864132	-	169	118479225	-	BALH_3637	-	hypothetical protein
3448	 33.74	0	3865006..3865491	+	161	118479226	-	BALH_3638	-	hypothetical protein
3449	 32.81	0	3865538..3866302	-	254	118479227	-	BALH_3639	-	hypothetical protein
3450	 34.84	0	3866338..3867066	-	242	118479228	-	BALH_3640	-	hypothetical protein
3451	 36.39	0	3867495..3868247	+	250	118479229	-	BALH_3641	-	ABC transporter, ATP-binding protein
3452	 41.84	+1	3868277..3869452	-	391	118479230	fadA	BALH_3642	-	acetyl-CoA acetyltransferase
3453	 36.63	0	3869592..3870077	-	161	118479231	-	BALH_3643	-	MutT/NUDIX family protein
3454	 30.27	-1	3870150..3870443	-	97	118479232	-	BALH_3644	-	hypothetical protein
3455	 37.16	0	3870595..3871221	+	208	118479233	-	BALH_3645	-	hypothetical protein
3456	 28.85	-2	3871518..3872276	-	252	118479234	-	BALH_3646	-	hypothetical protein
3457	 30.86	-1	3872290..3873057	-	255	118479235	-	BALH_3647	-	hypothetical protein
3458	 37.77	0	3873573..3874361	+	262	118479236	-	BALH_3648	-	3-hydroxybutyrate dehydrogenase
3459	 37.31	0	3874628..3875683	-	351	118479237	mtnA	BALH_3649	-	methylthioribose-1-phosphate isomerase
3460	 34.35	0	3875680..3876861	-	393	118479238	mtnK	BALH_3650	-	methylthioribose kinase
3461	 35.38	0	3877166..3877945	-	259	118479239	-	BALH_3651	-	carbon-nitrogen family hydrolase
3462	 37.25	0	3878044..3879216	+	390	118479240	-	BALH_3652	-	transaminase
3463	 37.11	0	3879459..3880703	+	414	118479241	mtnW	BALH_3653	-	2,3-diketo-5-methylthiopentyl-1-phosphate enolase
3464	 31.82	-1	3880700..3881359	+	219	118479242	mtnX	BALH_3654	-	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase
3465	 36.93	0	3881356..3881994	+	212	118479243	mtnB	BALH_3655	-	methylthioribulose-1-phosphate dehydratase
3466	 34.70	0	3881972..3882484	+	170	118479244	-	BALH_3656	-	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
3467	 38.77	0	3882791..3883066	+	91	118479245	-	BALH_3657	-	hypothetical protein
3468	 32.06	-1	3883117..3883509	-	130	118479246	-	BALH_3658	-	hypothetical protein
3469	 37.30	0	3883451..3884332	-	293	118479247	-	BALH_3659	-	3-hydroxyisobutyrate dehydrogenase
3470	 31.17	-1	3884759..3886054	-	431	118479248	-	BALH_3660	-	sensory box/GGDEF family protein
3471	 39.16	+1	3886383..3887000	+	205	118479249	-	BALH_3661	-	nitroreductase family protein
3472	 34.25	0	3887286..3887504	+	72	118479250	-	BALH_3662	-	hypothetical protein
3473	 38.02	0	3887680..3888063	+	127	118479251	-	BALH_3663	-	hypothetical protein
3474	 38.30	0	3888161..3889873	-	570	118479252	ptsI	BALH_3664	-	phosphoenolpyruvate--protein phosphotransferase
3475	 36.36	0	3889873..3890136	-	87	118479253	ptsH	BALH_3665	-	phosphocarrier protein HPr
3476	 37.62	0	3890272..3892392	-	706	118479254	ptsG	BALH_3666	-	PTS system, glucose-specific IIABC component
3477	 32.39	0	3892675..3893523	-	282	118479255	glcT	BALH_3667	-	BigG family transcription antiterminator
3478	 34.57	0	3893689..3894495	+	268	118479256	-	BALH_3668	-	HAD superfamily hydrolase
3479	 40.03	+1	3894566..3895312	-	248	118479257	-	BALH_3669	-	GntR family transcriptional regulator
3480	 37.64	0	3895227..3896015	-	262	118479258	nagB	BALH_3670	-	glucosamine-6-phosphate deaminase
3481	 37.34	0	3896020..3897168	-	382	118479259	-	BALH_3671	-	N-acetylglucosamine 6-phosphate deacetylase
3482	 36.43	0	3897371..3898339	-	322	118479260	-	BALH_3672	-	metallo-beta-lactamase
3483	 36.13	0	3898352..3898924	-	190	118479261	scpB	BALH_3673	-	segregation and condensation protein B
3484	 33.20	0	3899083..3899841	-	252	118479262	scpA	BALH_3674	-	segregation and condensation protein A
3485	 33.33	0	3900190..3900708	+	172	118479263	-	BALH_3675	-	hypothetical protein
3486	 32.52	0	3900729..3901097	-	122	118479264	-	BALH_3676	-	reductase
3487	 41.32	+1	3901566..3902003	-	145	118479265	-	BALH_3677	-	peptidyl-prolyl cis-trans isomerase B
3488	 35.29	0	3902191..3903057	+	288	118479266	-	BALH_3678	-	hypothetical protein
3489	 37.41	0	3903088..3903897	-	269	118479267	-	BALH_3679	-	HAD superfamily hydrolase
3490	 35.16	0	3903988..3905469	-	493	118479268	spoVAF	BALH_3680	-	stage V sporulation protein AF
3491	 38.42	0	3905447..3906016	-	189	118479269	-	BALH_3681	-	stage V sporulation protein AE, C-terminal region
3492	 38.18	0	3906022..3906372	-	116	118479270	spoVAE	BALH_3683	-	stage V sporulation protein AE, N-terminal region
3493	 40.41	+1	3906376..3907392	-	338	118479271	-	BALH_3684	-	stage V sporulation protein AD
3494	 36.82	0	3907406..3907864	-	152	118479272	spoVAC	BALH_3685	-	stage V sporulation protein AC
3495	 37.89	0	3907879..3908295	-	138	118479273	-	BALH_3686	-	stage V sporulation protein AB
3496	 33.82	0	3908288..3908908	-	206	118479274	-	BALH_3687	-	stage V sporulation protein AA
3497	 39.10	+1	3909123..3910649	-	508	118479275	-	BALH_3689	-	sodium-dependent symporter
3498	 36.76	0	3910787..3911545	-	252	118479276	-	BALH_3690	-	sporulation sigma factor SigF
3499	 36.05	0	3911558..3911998	-	146	118479277	-	BALH_3691	-	anti-sigma F factor
3500	 40.17	+1	3911999..3912349	-	116	118479278	-	BALH_3692	-	anti-sigma F factor antagonist
3501	 36.42	0	3912520..3913716	-	398	118479279	dacF	BALH_3693	-	D-alanyl-D-alanine carboxypeptidase DacF
3502	 35.70	0	3913790..3914296	+	168	118479280	-	BALH_3694	-	GntR family transcriptional regulator
3503	 33.56	0	3914247..3915143	+	298	118479281	-	BALH_3695	-	ABC transporter, ATP-binding protein
3504	 32.71	0	3915094..3916221	+	375	118479282	-	BALH_3696	-	acetoin transport permease protein
3505	 34.25	0	3916319..3916864	-	181	118479283	-	BALH_3697	-	hypothetical protein
3506	 35.76	0	3916967..3917419	-	150	118479284	-	BALH_3698	-	MarR family transcriptional regulator
3507	 37.35	0	3917546..3918217	+	223	118479285	-	BALH_3699	-	hypothetical protein
3508	 39.84	+1	3918352..3919641	+	429	118479286	-	BALH_3701	-	xanthine/uracil permease family protein
3509	 32.21	-1	3919675..3920652	-	325	118479287	-	BALH_3702	-	magnesium and cobalt transport protein
3510	 38.62	0	3920700..3922004	-	434	118479288	-	BALH_3703	-	pyrimidine-nucleoside phosphorylase
3511	 39.05	+1	3922012..3922833	-	273	118479289	-	BALH_3704	-	purine nucleoside phosphorylase
3512	 38.48	0	3922846..3924030	-	394	118479290	deoB	BALH_3705	-	phosphopentomutase
3513	 35.97	0	3924436..3925194	-	252	118479291	-	BALH_3706	-	hypothetical protein
3514	 36.48	0	3925323..3926213	-	296	118479292	xerD	BALH_3707	-	site-specific tyrosine recombinase XerD
3515	 30.77	-1	3926220..3926492	-	90	118479293	-	BALH_3708	-	hypothetical protein
3516	 38.38	0	3926554..3927009	-	151	118479294	-	BALH_3709	-	FUR family transcriptional regulator
3517	 32.56	0	3927116..3927763	-	215	118479295	-	BALH_3710	-	stage II sporulation protein M
3518	 36.96	0	3927889..3928440	+	183	118479296	-	BALH_3711	-	acetyltransferase
3519	 36.11	0	3928465..3929004	-	179	118479297	-	BALH_3712	-	ADP-ribose diphosphatase
3520	 36.28	0	3929261..3930175	+	304	118479298	lolS	BALH_3713	-	aldo/keto reductase family oxidoreductase
3521	 36.80	0	3930205..3931098	-	297	118479299	-	BALH_3714	-	aldo/keto reductase family oxidoreductase
3522	 36.57	0	3931161..3931685	-	174	118479300	-	BALH_3715	-	hypothetical protein
3523	 32.97	0	3931755..3932027	-	90	118479301	-	BALH_3716	-	hypothetical protein
3524	 37.04	0	3932220..3933809	+	529	118479302	-	BALH_3717	-	5'-nucleotidase
3525	 31.95	-1	3933938..3934444	-	168	118479303	-	BALH_3718	-	CopG family transcriptional regulator
3526	 35.91	0	3934449..3935534	+	361	118479304	-	BALH_3719	-	prolyl aminopeptidase
3527	 39.24	+1	3935666..3936985	+	439	118479305	-	BALH_3720	-	Na+/H+ antiporter
3528	 32.75	0	3937009..3937872	-	287	118479306	-	BALH_3721	-	LacI family transcription regulator
3529	 34.52	0	3938536..3939459	+	307	118479307	-	BALH_3722	-	alpha/beta hydrolase
3530	 36.59	0	3939470..3939715	-	81	118479308	-	BALH_3723	-	hypothetical protein
3531	 36.64	0	3939669..3940061	+	130	118479309	-	BALH_3724	-	hypothetical protein
3532	 38.77	0	3940680..3941819	+	379	118479310	-	BALH_3725	-	5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase
3533	 37.05	0	3941801..3942445	+	214	118479311	-	BALH_3726	-	riboflavin synthase subunit alpha
3534	 40.03	+1	3942458..3943651	+	397	118479312	-	BALH_3727	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
3535	 39.61	+1	3943670..3944131	+	153	118479313	ribH	BALH_3728	-	riboflavin synthase subunit beta
3536	 31.46	-1	3944159..3944479	-	106	118479314	-	BALH_3729	-	hypothetical protein
3537	 38.14	0	3944662..3945660	-	332	118479315	-	BALH_3730	-	biotin synthase
3538	 34.69	0	3945662..3946471	-	269	118479316	-	BALH_3731	-	biotin synthesis protein
3539	 35.76	0	3946437..3947177	-	246	118479317	-	BALH_3732	-	biotin biosynthesis protein (BioH)
3540	 37.79	0	3947174..3948361	-	395	118479318	bioF	BALH_3733	-	8-amino-7-oxononanoate synthase
3541	 38.13	0	3948327..3949055	-	242	118479319	bioD	BALH_3734	-	dithiobiotin synthetase
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.