IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3246	 35.93	0	3643527..3643796	-	89	118479024	-	BALH_3432	-	hypothetical protein
3247	 33.49	0	3643905..3645203	-	432	118479025	-	BALH_3433	-	zinc protease
3248	 35.78	0	3645233..3646132	-	299	118479026	-	BALH_3434	-	polysaccharide deacetylase
3249	 39.27	+1	3646284..3648422	-	712	118479027	pnpA	BALH_3435	-	polynucleotide phosphorylase/polyadenylase
3250	 38.89	0	3648583..3648852	-	89	118479028	rpsO	BALH_3436	-	30S ribosomal protein S15
3251	 34.52	0	3648953..3649960	-	335	118479029	-	BALH_3437	-	bifunctional riboflavin kinase/FMN adenylyltransferase
3252	 36.36	0	3649968..3650891	-	307	118479030	truB	BALH_3438	-	tRNA pseudouridine synthase B
3253	 35.57	0	3650978..3651334	-	118	118479031	rbfA	BALH_3439	-	ribosome-binding factor A
3254	 37.59	0	3651350..3651631	-	93	118479032	-	BALH_3440	-	hypothetical protein
3255	 38.57	0	3651628..3653748	-	706	118479033	infB	BALH_3441	-	translation initiation factor IF-2
3256	 44.87	+2	3653693..3654004	-	103	118479034	-	BALH_3442	-	hypothetical protein
3257	 36.88	0	3654005..3654286	-	93	118479035	-	BALH_3443	-	hypothetical protein
3258	 38.66	0	3654289..3655395	-	368	118479036	nusA	BALH_3444	-	transcription elongation factor NusA
3259	 39.81	+1	3655413..3655937	-	174	118479037	-	BALH_3445	-	hypothetical protein
3260	 39.39	+1	3656216..3657667	-	483	118479038	dnaE	BALH_3446	-	DNA polymerase III, alpha subunit
3261	 33.33	0	3657729..3659555	-	608	118479039	-	BALH_3447	-	group II intron
3262	 37.44	0	3660271..3663189	-	972	118479040	polC	BALH_3448	-	DNA polymerase III, alpha subunit
3263	 38.62	0	3663308..3665008	-	566	118479041	proS	BALH_3449	-	prolyl-tRNA synthetase
3264	 36.82	0	3665118..3666380	-	420	118479042	-	BALH_3450	-	peptidase RseP
3265	 38.93	0	3666391..3667533	-	380	162382777	-	BALH_3451	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
3266	 32.83	0	3667557..3668354	-	265	118479044	-	BALH_3453	-	phosphatidate cytidylyltransferase
3267	 38.10	0	3668366..3669142	-	258	118479045	-	BALH_3454	-	undecaprenyl pyrophosphate synthetase
3268	 36.38	0	3669228..3669785	-	185	118479046	frr	BALH_3455	-	ribosome recycling factor
3269	 39.56	+1	3669788..3670510	-	240	118479047	pyrH	BALH_3456	-	uridylate kinase
3270	 40.25	+1	3670577..3671473	-	298	118479048	tsf	BALH_3457	-	elongation factor Ts
3271	 39.17	+1	3671568..3672269	-	233	118479049	rpsB	BALH_3458	-	30S ribosomal protein S2
3272	 37.05	0	3672622..3673401	-	259	118479050	-	BALH_3459	-	transcriptional repressor CodY
3273	 37.11	0	3673479..3674909	-	476	118479051	hslU	BALH_3460	-	ATP-dependent protease ATP-binding subunit
3274	 41.62	+1	3674893..3675435	-	180	118479052	-	BALH_3461	-	ATP-dependent protease peptidase subunit
3275	 36.74	0	3675478..3676386	-	302	118479053	xerC	BALH_3462	-	site-specific tyrosine recombinase XerC
3276	 40.03	+1	3676443..3677801	-	452	118479054	gidA	BALH_3463	-	tRNA (uracil-5-)-methyltransferase Gid
3277	 39.25	+1	3677798..3679876	-	692	118479055	-	BALH_3464	-	DNA topoisomerase I
3278	 32.76	0	3680021..3680890	-	289	118479056	-	BALH_3465	-	SMF family nucleotide-binding protein
3279	 41.09	+1	3680978..3681880	-	300	118479057	-	BALH_3466	-	succinyl-CoA synthetase subunit alpha
3280	 37.81	0	3681901..3683061	-	386	118479058	sucC	BALH_3467	-	succinyl-CoA synthetase subunit beta
3281	 37.08	0	3683255..3684028	-	257	118479059	rnhB	BALH_3468	-	ribonuclease HII
3282	 36.83	0	3684080..3685024	-	314	118479060	rbgA	BALH_3469	-	ribosomal biogenesis GTPase
3283	 36.16	0	3684991..3685557	-	188	118479061	-	BALH_3470	-	signal peptidase SipM
3284	 40.58	+1	3685644..3685988	-	114	118479062	rplS	BALH_3471	-	50S ribosomal protein L19
3285	 39.05	+1	3686135..3686869	-	244	118479063	trmD	BALH_3472	-	tRNA (guanine-N(1)-)-methyltransferase
3286	 34.19	0	3686869..3687450	-	193	118479064	rimM	BALH_3473	-	16S rRNA-processing protein
3287	 38.03	0	3687505..3687738	-	77	118479065	-	BALH_3474	-	KH domain-containing protein
3288	 38.46	0	3687747..3688019	-	90	118479066	rpsP	BALH_3475	-	30S ribosomal protein S16
3289	 39.63	+1	3688120..3689469	-	449	118479067	-	BALH_3476	-	signal recognition particle subunit FFH/SRP54 (srp54)
3290	 33.33	0	3689482..3689814	-	110	118479068	-	BALH_3477	-	hypothetical protein
3291	 36.57	0	3689949..3690938	-	329	118479069	-	BALH_3478	-	signal recognition particle-docking protein FtsY
3292	 37.09	0	3690954..3694523	-	1189	118479070	smc	BALH_3479	-	condensin subunit Smc
3293	 37.90	0	3694670..3695458	-	262	118479071	rnc	BALH_3480	-	ribonuclease III
3294	 38.68	0	3695466..3695708	-	80	118479072	acpP	BALH_3481	-	acyl carrier protein
3295	 36.84	0	3695769..3696509	-	246	118479073	fabG	BALH_3482	-	3-ketoacyl-(acyl-carrier-protein) reductase
3296	 40.42	+1	3696509..3697453	-	314	118479074	-	BALH_3483	-	[Acyl-carrier-protein] S-malonyltransferase
3297	 39.38	+1	3697468..3698460	-	330	118479075	-	BALH_3484	-	putative glycerol-3-phosphate acyltransferase PlsX
3298	 36.79	0	3698457..3699209	-	250	118479076	-	BALH_3485	-	fatty acid biosynthesis transcriptional regulator
3299	 39.60	+1	3699139..3701196	-	685	118479077	recG	BALH_3486	-	ATP-dependent DNA helicase RecG
3300	 38.52	0	3701477..3703153	-	558	118479078	-	BALH_3487	-	dihydroxyacetone-related kinase
3301	 35.17	0	3703176..3703556	-	126	118479079	-	BALH_3488	-	hypothetical protein
3302	 43.39	+2	3703917..3704105	+	62	118479080	rpmB	BALH_3489	-	50S ribosomal protein L28
3303	 36.14	0	3704326..3704967	-	213	118479081	-	BALH_3490	-	thiamine pyrophosphokinase
3304	 37.98	0	3705106..3705750	-	214	118479082	-	BALH_3491	-	ribulose-phosphate 3-epimerase
3305	 36.47	0	3705753..3706676	-	307	118479083	-	BALH_3492	-	ribosome-associated GTPase
3306	 36.00	0	3706903..3708888	-	661	118479084	-	BALH_3493	-	serine/threonine protein kinase
3307	 39.23	+1	3708885..3709715	-	276	118479085	-	BALH_3494	-	protein phosphatase 2C
3308	 36.73	0	3709642..3710730	-	362	118479086	-	BALH_3495	-	radical SAM protein
3309	 36.70	0	3710735..3712069	-	444	118479087	-	BALH_3496	-	sun protein
3310	 38.52	0	3712066..3713010	-	314	118479088	fmt	BALH_3497	-	methionyl-tRNA formyltransferase
3311	 38.85	0	3713034..3713504	-	156	118479089	-	BALH_3498	-	peptide deformylase
3312	 37.36	0	3713516..3715921	-	801	118479090	priA	BALH_3499	-	primosome assembly protein PriA
3313	 38.14	0	3715918..3717123	-	401	118479091	-	BALH_3500	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
3314	 33.33	0	3717296..3717508	-	70	118479092	rpoZ	BALH_3501	-	DNA-directed RNA polymerase subunit omega
3315	 38.29	0	3717511..3718155	-	214	118479093	gmk	BALH_3502	-	guanylate kinase
3316	 39.39	+1	3718142..3718405	-	87	118479094	-	BALH_3503	-	hypothetical protein
3317	 34.82	0	3718473..3719348	-	291	118479095	-	BALH_3504	-	hypothetical protein
3318	 39.76	+1	3719449..3722169	-	906	118479096	pacL	BALH_3505	-	cation transporter E1-E2 family ATPase
3319	 33.68	0	3722275..3723984	+	569	118479097	-	BALH_3506	-	fibronectin-binding protein
3320	 34.64	0	3724312..3725382	+	356	118479098	pepQ	BALH_3507	-	proline dipeptidase
3321	 34.48	0	3725467..3725991	+	174	118479099	-	BALH_3508	-	hypothetical protein
3322	 39.12	+1	3726855..3728324	+	489	118479100	-	BALH_3509	-	hypothetical protein
3323	 33.60	0	3728873..3729250	+	125	118479101	-	BALH_3510	-	transposase
3324	 35.09	0	3729385..3730125	+	246	118479102	-	BALH_3511	-	transposase
3325	 39.78	+1	3730182..3730832	-	216	118479103	pyrE	BALH_3512	-	orotate phosphoribosyltransferase
3326	 40.99	+1	3730811..3731554	-	247	118479104	-	BALH_3513	-	orotidine 5'-phosphate decarboxylase
3327	 40.43	+1	3731512..3732441	-	309	118479105	-	BALH_3514	-	dihydroorotate dehydrogenase 1B
3328	 41.28	+1	3732438..3733217	-	259	118479106	-	BALH_3515	-	dihydroorotate dehydrogenase electron transfer subunit
3329	 38.43	0	3733214..3736432	-	1072	118479107	carB	BALH_3516	-	carbamoyl phosphate synthase large subunit
3330	 37.43	0	3736417..3737538	-	373	118479108	-	BALH_3517	-	carbamoyl phosphate synthase small subunit
3331	 40.02	+1	3737511..3738797	-	428	118479109	pyrC	BALH_3518	-	dihydroorotase
3332	 38.87	0	3738781..3739701	-	306	118479110	pyrB	BALH_3519	-	aspartate carbamoyltransferase catalytic subunit
3333	 39.64	+1	3739844..3741160	-	438	118479111	-	BALH_3521	-	uracil permease
3334	 37.38	0	3741274..3741816	-	180	118479112	-	BALH_3522	-	pyrimidine regulatory protein PyrR
3335	 37.84	0	3742019..3742927	-	302	118479113	rluD	BALH_3523	-	ribosomal large subunit pseudouridine synthase D
3336	 31.91	-1	3742932..3743423	-	163	118479114	lspA	BALH_3524	-	lipoprotein signal peptidase
3337	 32.73	0	3743515..3743844	-	109	118479115	-	BALH_3525	-	DnaK suppressor protein
3338	 38.28	0	3744000..3746771	-	923	118479116	ileS	BALH_3526	-	isoleucyl-tRNA synthetase
3339	 34.12	0	3747113..3747619	-	168	118479117	-	BALH_3527	-	cell-division initiation protein (DivIVA)
3340	 36.33	0	3747709..3748476	-	255	118479118	-	BALH_3528	-	S4 domain-containing protein
3341	 37.15	0	3748762..3749232	-	156	118479119	-	BALH_3529	-	hypothetical protein
3342	 34.22	0	3749252..3749926	-	224	118479120	-	BALH_3530	-	hypothetical protein
3343	 36.25	0	3749923..3750780	-	285	118479121	-	BALH_3531	-	hypothetical protein
3344	 32.17	-1	3750859..3751203	-	114	118479122	-	BALH_3532	-	hypothetical protein
3345	 35.98	0	3751312..3752181	-	289	118479123	-	BALH_3533	-	sporulation sigma factor SigG
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.