IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3201	 31.27	-1	3586192..3586773	-	193	118478979	-	BALH_3386	-	hypothetical protein
3202	 37.73	0	3587003..3588436	-	477	118478980	-	BALH_3387	-	GntR family transcriptional regulator
3203	 31.62	-1	3589229..3590218	-	329	118478981	-	BALH_3388	-	glycosylphosphatidylinositol diacylglycerol-lyase
3204	 34.91	0	3590396..3592237	-	613	118478982	-	BALH_3389	-	serine protease
3205	 36.09	0	3592532..3593329	+	265	118478983	-	BALH_3390	-	cell wall hydrolase
3206	 35.43	0	3593592..3594929	+	445	118478984	-	BALH_3391	-	hypothetical protein
3207	 32.86	0	3595350..3597245	+	631	118478985	-	BALH_3392	-	sulfatase
3208	 31.02	-1	3597345..3600158	-	937	118478986	-	BALH_3393	-	TPR repeat-containing protein
3209	 26.88	-2	3600612..3600797	+	61	118478987	-	BALH_3394	-	hypothetical protein
3210	 38.15	0	3601113..3602108	-	331	118478988	-	BALH_3395	-	penicillin V acylase precursor. cysteine peptidase. MEROPS family C59
3211	 38.73	0	3602319..3604262	-	647	118478989	mutL	BALH_3396	-	DNA mismatch repair protein
3212	 36.55	0	3604271..3606943	-	890	118478990	mutS	BALH_3397	-	DNA mismatch repair protein
3213	 36.10	0	3607125..3607667	-	180	118478991	-	BALH_3398	-	spore coat protein E
3214	 34.03	0	3607793..3608224	-	143	118478992	-	BALH_3399	-	hypothetical protein
3215	 36.89	0	3608228..3609802	-	524	118478993	-	BALH_3400	-	tRNA 2-methylthioadenine synthetase
3216	 37.14	0	3610185..3611051	-	288	118478994	-	BALH_3401	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
3217	 38.11	0	3611038..3612795	-	585	118478995	-	BALH_3402	-	pyruvate ferredoxin oxidoreductase, alpha subunit
3218	 34.48	0	3613023..3613982	-	319	118478996	-	BALH_3403	-	thermostable dipeptidase
3219	 42.33	+1	3614006..3614305	-	99	118478997	-	BALH_3404	-	stage V sporulation protein S
3220	 38.11	0	3614415..3615209	-	264	118478998	-	BALH_3405	-	calcineurin-like phosphoesterase
3221	 39.67	+1	3615375..3617000	-	541	118478999	-	BALH_3406	-	phosphodiesterase
3222	 40.50	+1	3617419..3618450	-	343	118479000	recA	BALH_3407	-	recombinase A
3223	 38.66	0	3618595..3619833	-	412	118479001	-	BALH_3408	-	competence damage-inducible protein A
3224	 34.89	0	3619854..3620432	-	192	118479002	-	BALH_3409	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
3225	 37.79	0	3620496..3621416	-	306	118479003	-	BALH_3410	-	hypothetical protein
3226	 36.13	0	3621429..3622214	-	261	118479004	-	BALH_3411	-	ACT domain-containing protein
3227	 37.12	0	3622354..3622617	-	87	118479005	-	BALH_3412	-	hypothetical protein
3228	 38.66	0	3622678..3623391	-	237	118479006	fabG	BALH_3413	-	3-ketoacyl-(acyl-carrier-protein) reductase
3229	 33.33	0	3623495..3624781	-	428	118479007	-	BALH_3414	-	insulinase
3230	 34.43	0	3624782..3626056	-	424	118479008	-	BALH_3415	-	insulinase
3231	 39.58	+1	3626255..3627214	-	319	118479009	-	BALH_3416	-	ABC transporter, permease
3232	 39.38	+1	3627215..3628273	-	352	118479010	-	BALH_3417	-	ABC transporter, permease
3233	 36.60	0	3628266..3629825	-	519	118479011	-	BALH_3419	-	ABC transporter, ATP-binding protein
3234	 36.14	0	3629907..3630974	-	355	118479012	-	BALH_3420	-	Bmp family lipoprotein
3235	 36.98	0	3631064..3631804	-	246	118479013	-	BALH_3421	-	GntR family transcriptional regulator
3236	 37.78	0	3632328..3634709	-	793	118479014	ftsK	BALH_3422	-	stage III sporulation protein E
3237	 35.29	0	3634921..3635124	-	67	118479015	-	BALH_3423	-	hypothetical protein
3238	 39.33	+1	3635121..3635870	-	249	118479016	-	BALH_3424	-	ATP-dependent Clp protease proteolytic subunit ClpP
3239	 36.21	0	3635974..3637644	-	556	118479017	-	BALH_3425	-	metallo-beta-lactamase family protein
3240	 23.25	-2	3638149..3638376	+	75	118479018	-	BALH_3426	-	hypothetical protein
3241	 39.14	+1	3638411..3639289	-	292	118479019	-	BALH_3427	-	dihydrodipicolinate synthase
3242	 39.05	+1	3639301..3640542	-	413	118479020	-	BALH_3428	-	aspartate kinase I
3243	 37.62	0	3640557..3641606	-	349	118479021	-	BALH_3429	-	aspartate-semialdehyde dehydrogenase
3244	 39.50	+1	3641754..3642353	-	199	118479022	spoVFB	BALH_3430	-	dipicolinate synthase subunit B
3245	 37.54	0	3642350..3643252	-	300	118479023	dapA	BALH_3431	-	dipicolinate synthase subunit A
3246	 35.93	0	3643527..3643796	-	89	118479024	-	BALH_3432	-	hypothetical protein
3247	 33.49	0	3643905..3645203	-	432	118479025	-	BALH_3433	-	zinc protease
3248	 35.78	0	3645233..3646132	-	299	118479026	-	BALH_3434	-	polysaccharide deacetylase
3249	 39.27	+1	3646284..3648422	-	712	118479027	pnpA	BALH_3435	-	polynucleotide phosphorylase/polyadenylase
3250	 38.89	0	3648583..3648852	-	89	118479028	rpsO	BALH_3436	-	30S ribosomal protein S15
3251	 34.52	0	3648953..3649960	-	335	118479029	-	BALH_3437	-	bifunctional riboflavin kinase/FMN adenylyltransferase
3252	 36.36	0	3649968..3650891	-	307	118479030	truB	BALH_3438	-	tRNA pseudouridine synthase B
3253	 35.57	0	3650978..3651334	-	118	118479031	rbfA	BALH_3439	-	ribosome-binding factor A
3254	 37.59	0	3651350..3651631	-	93	118479032	-	BALH_3440	-	hypothetical protein
3255	 38.57	0	3651628..3653748	-	706	118479033	infB	BALH_3441	-	translation initiation factor IF-2
3256	 44.87	+2	3653693..3654004	-	103	118479034	-	BALH_3442	-	hypothetical protein
3257	 36.88	0	3654005..3654286	-	93	118479035	-	BALH_3443	-	hypothetical protein
3258	 38.66	0	3654289..3655395	-	368	118479036	nusA	BALH_3444	-	transcription elongation factor NusA
3259	 39.81	+1	3655413..3655937	-	174	118479037	-	BALH_3445	-	hypothetical protein
3260	 39.39	+1	3656216..3657667	-	483	118479038	dnaE	BALH_3446	-	DNA polymerase III, alpha subunit
3261	 33.33	0	3657729..3659555	-	608	118479039	-	BALH_3447	-	group II intron
3262	 37.44	0	3660271..3663189	-	972	118479040	polC	BALH_3448	-	DNA polymerase III, alpha subunit
3263	 38.62	0	3663308..3665008	-	566	118479041	proS	BALH_3449	-	prolyl-tRNA synthetase
3264	 36.82	0	3665118..3666380	-	420	118479042	-	BALH_3450	-	peptidase RseP
3265	 38.93	0	3666391..3667533	-	380	162382777	-	BALH_3451	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
3266	 32.83	0	3667557..3668354	-	265	118479044	-	BALH_3453	-	phosphatidate cytidylyltransferase
3267	 38.10	0	3668366..3669142	-	258	118479045	-	BALH_3454	-	undecaprenyl pyrophosphate synthetase
3268	 36.38	0	3669228..3669785	-	185	118479046	frr	BALH_3455	-	ribosome recycling factor
3269	 39.56	+1	3669788..3670510	-	240	118479047	pyrH	BALH_3456	-	uridylate kinase
3270	 40.25	+1	3670577..3671473	-	298	118479048	tsf	BALH_3457	-	elongation factor Ts
3271	 39.17	+1	3671568..3672269	-	233	118479049	rpsB	BALH_3458	-	30S ribosomal protein S2
3272	 37.05	0	3672622..3673401	-	259	118479050	-	BALH_3459	-	transcriptional repressor CodY
3273	 37.11	0	3673479..3674909	-	476	118479051	hslU	BALH_3460	-	ATP-dependent protease ATP-binding subunit
3274	 41.62	+1	3674893..3675435	-	180	118479052	-	BALH_3461	-	ATP-dependent protease peptidase subunit
3275	 36.74	0	3675478..3676386	-	302	118479053	xerC	BALH_3462	-	site-specific tyrosine recombinase XerC
3276	 40.03	+1	3676443..3677801	-	452	118479054	gidA	BALH_3463	-	tRNA (uracil-5-)-methyltransferase Gid
3277	 39.25	+1	3677798..3679876	-	692	118479055	-	BALH_3464	-	DNA topoisomerase I
3278	 32.76	0	3680021..3680890	-	289	118479056	-	BALH_3465	-	SMF family nucleotide-binding protein
3279	 41.09	+1	3680978..3681880	-	300	118479057	-	BALH_3466	-	succinyl-CoA synthetase subunit alpha
3280	 37.81	0	3681901..3683061	-	386	118479058	sucC	BALH_3467	-	succinyl-CoA synthetase subunit beta
3281	 37.08	0	3683255..3684028	-	257	118479059	rnhB	BALH_3468	-	ribonuclease HII
3282	 36.83	0	3684080..3685024	-	314	118479060	rbgA	BALH_3469	-	ribosomal biogenesis GTPase
3283	 36.16	0	3684991..3685557	-	188	118479061	-	BALH_3470	-	signal peptidase SipM
3284	 40.58	+1	3685644..3685988	-	114	118479062	rplS	BALH_3471	-	50S ribosomal protein L19
3285	 39.05	+1	3686135..3686869	-	244	118479063	trmD	BALH_3472	-	tRNA (guanine-N(1)-)-methyltransferase
3286	 34.19	0	3686869..3687450	-	193	118479064	rimM	BALH_3473	-	16S rRNA-processing protein
3287	 38.03	0	3687505..3687738	-	77	118479065	-	BALH_3474	-	KH domain-containing protein
3288	 38.46	0	3687747..3688019	-	90	118479066	rpsP	BALH_3475	-	30S ribosomal protein S16
3289	 39.63	+1	3688120..3689469	-	449	118479067	-	BALH_3476	-	signal recognition particle subunit FFH/SRP54 (srp54)
3290	 33.33	0	3689482..3689814	-	110	118479068	-	BALH_3477	-	hypothetical protein
3291	 36.57	0	3689949..3690938	-	329	118479069	-	BALH_3478	-	signal recognition particle-docking protein FtsY
3292	 37.09	0	3690954..3694523	-	1189	118479070	smc	BALH_3479	-	condensin subunit Smc
3293	 37.90	0	3694670..3695458	-	262	118479071	rnc	BALH_3480	-	ribonuclease III
3294	 38.68	0	3695466..3695708	-	80	118479072	acpP	BALH_3481	-	acyl carrier protein
3295	 36.84	0	3695769..3696509	-	246	118479073	fabG	BALH_3482	-	3-ketoacyl-(acyl-carrier-protein) reductase
3296	 40.42	+1	3696509..3697453	-	314	118479074	-	BALH_3483	-	[Acyl-carrier-protein] S-malonyltransferase
3297	 39.38	+1	3697468..3698460	-	330	118479075	-	BALH_3484	-	putative glycerol-3-phosphate acyltransferase PlsX
3298	 36.79	0	3698457..3699209	-	250	118479076	-	BALH_3485	-	fatty acid biosynthesis transcriptional regulator
3299	 39.60	+1	3699139..3701196	-	685	118479077	recG	BALH_3486	-	ATP-dependent DNA helicase RecG
3300	 38.52	0	3701477..3703153	-	558	118479078	-	BALH_3487	-	dihydroxyacetone-related kinase
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.