IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3170	 36.89	0	3557387..3558202	+	271	118478948	-	BALH_3353	-	formate transporter
3171	 37.59	0	3558337..3558618	+	93	118478949	-	BALH_3354	-	HU family DNA-binding protein
3172	 36.92	0	3558730..3561156	-	808	118478950	-	BALH_3355	-	heavy metal-transporting ATPase
3173	 36.23	0	3561243..3561449	-	68	118478951	-	BALH_3356	-	copper-ion-binding protein
3174	 32.34	0	3561638..3561940	-	100	118478952	-	BALH_3357	-	hypothetical protein
3175	 32.46	0	3562232..3562459	-	75	118478953	-	BALH_3358	-	hypothetical protein
3176	 34.62	0	3562762..3563151	-	129	118478954	-	BALH_3359	-	LuxR family transcriptional regulator
3177	 34.80	0	3563343..3564161	-	272	118478955	-	BALH_3360	-	esterase
3178	 34.67	0	3564178..3564999	-	273	118478956	-	BALH_3361	-	bacillibactin ABC transporter ATPase protein
3179	 35.87	0	3565014..3566036	-	340	118478957	-	BALH_3363	-	bacillibactin ABC transporter integral membrane protein
3180	 36.58	0	3566029..3567045	-	338	118478958	fecD	BALH_3364	-	bacillibactin ABC transporter integral membrane protein
3181	 33.54	0	3567064..3568029	-	321	118478959	feuA	BALH_3365	-	bacillibactin ABC transporter substrate-binding protein
3182	 26.95	-2	3568085..3568225	+	46	118478960	-	BALH_3366	-	hypothetical protein
3183	 35.31	0	3568329..3569087	-	252	118478961	-	BALH_3367	-	exodeoxyribonuclease III
3184	 35.51	0	3569242..3569838	+	198	118478962	adaA	BALH_3368	-	AraC family transcriptional regulator
3185	 34.09	0	3569819..3570349	+	176	118478963	-	BALH_3369	-	methylated-DNA--protein-cysteine S-methyltransferase
3186	 33.77	0	3570346..3571257	+	303	118478964	-	BALH_3370	-	DNA-3-methyladenine glycosylase II
3187	 36.25	0	3571294..3572526	-	410	118478965	-	BALH_3371	-	peptidase T
3188	 34.55	0	3572618..3573358	+	246	118478966	-	BALH_3373	-	hypothetical protein
3189	 33.96	0	3573449..3573766	-	105	118478967	-	BALH_3374	-	hypothetical protein
3190	 31.77	-1	3574090..3574665	-	191	118478968	pgm	BALH_3375	-	phosphoglycerate mutase
3191	 34.31	0	3574696..3575511	-	271	118478969	-	BALH_3376	-	alpha/beta fold family hydrolase
3192	 36.26	0	3575696..3575968	-	90	118478970	-	BALH_3377	-	glyoxylase family protein
3193	 30.48	-1	3576513..3579242	+	909	118478971	-	BALH_3378	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
3194	 35.02	0	3579343..3580407	-	354	118478972	murG	BALH_3379	-	N-acetylglucosaminyl transferase
3195	 30.22	-1	3580456..3580776	-	106	118478973	-	BALH_3380	-	hypothetical protein
3196	 33.33	0	3580802..3581713	-	303	118478974	-	BALH_3381	-	UDP-2-acetamido-2,6-dideoxy-hexulose 4-reductase
3197	 34.13	0	3581710..3582714	-	334	118478975	-	BALH_3382	-	UDP-N-acetylglucosamine 4,6-dehydratase
3198	 33.58	0	3582965..3584164	+	399	118478976	-	BALH_3383	-	hypothetical protein
3199	 32.16	-1	3584605..3585369	-	254	118478977	-	BALH_3384	-	HAD superfamily hydrolase
3200	 33.77	0	3585439..3586128	+	229	118478978	-	BALH_3385	-	Crp/FNR family transcriptional regulator
3201	 31.27	-1	3586192..3586773	-	193	118478979	-	BALH_3386	-	hypothetical protein
3202	 37.73	0	3587003..3588436	-	477	118478980	-	BALH_3387	-	GntR family transcriptional regulator
3203	 31.62	-1	3589229..3590218	-	329	118478981	-	BALH_3388	-	glycosylphosphatidylinositol diacylglycerol-lyase
3204	 34.91	0	3590396..3592237	-	613	118478982	-	BALH_3389	-	serine protease
3205	 36.09	0	3592532..3593329	+	265	118478983	-	BALH_3390	-	cell wall hydrolase
3206	 35.43	0	3593592..3594929	+	445	118478984	-	BALH_3391	-	hypothetical protein
3207	 32.86	0	3595350..3597245	+	631	118478985	-	BALH_3392	-	sulfatase
3208	 31.02	-1	3597345..3600158	-	937	118478986	-	BALH_3393	-	TPR repeat-containing protein
3209	 26.88	-2	3600612..3600797	+	61	118478987	-	BALH_3394	-	hypothetical protein
3210	 38.15	0	3601113..3602108	-	331	118478988	-	BALH_3395	-	penicillin V acylase precursor. cysteine peptidase. MEROPS family C59
3211	 38.73	0	3602319..3604262	-	647	118478989	mutL	BALH_3396	-	DNA mismatch repair protein
3212	 36.55	0	3604271..3606943	-	890	118478990	mutS	BALH_3397	-	DNA mismatch repair protein
3213	 36.10	0	3607125..3607667	-	180	118478991	-	BALH_3398	-	spore coat protein E
3214	 34.03	0	3607793..3608224	-	143	118478992	-	BALH_3399	-	hypothetical protein
3215	 36.89	0	3608228..3609802	-	524	118478993	-	BALH_3400	-	tRNA 2-methylthioadenine synthetase
3216	 37.14	0	3610185..3611051	-	288	118478994	-	BALH_3401	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
3217	 38.11	0	3611038..3612795	-	585	118478995	-	BALH_3402	-	pyruvate ferredoxin oxidoreductase, alpha subunit
3218	 34.48	0	3613023..3613982	-	319	118478996	-	BALH_3403	-	thermostable dipeptidase
3219	 42.33	+1	3614006..3614305	-	99	118478997	-	BALH_3404	-	stage V sporulation protein S
3220	 38.11	0	3614415..3615209	-	264	118478998	-	BALH_3405	-	calcineurin-like phosphoesterase
3221	 39.67	+1	3615375..3617000	-	541	118478999	-	BALH_3406	-	phosphodiesterase
3222	 40.50	+1	3617419..3618450	-	343	118479000	recA	BALH_3407	-	recombinase A
3223	 38.66	0	3618595..3619833	-	412	118479001	-	BALH_3408	-	competence damage-inducible protein A
3224	 34.89	0	3619854..3620432	-	192	118479002	-	BALH_3409	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
3225	 37.79	0	3620496..3621416	-	306	118479003	-	BALH_3410	-	hypothetical protein
3226	 36.13	0	3621429..3622214	-	261	118479004	-	BALH_3411	-	ACT domain-containing protein
3227	 37.12	0	3622354..3622617	-	87	118479005	-	BALH_3412	-	hypothetical protein
3228	 38.66	0	3622678..3623391	-	237	118479006	fabG	BALH_3413	-	3-ketoacyl-(acyl-carrier-protein) reductase
3229	 33.33	0	3623495..3624781	-	428	118479007	-	BALH_3414	-	insulinase
3230	 34.43	0	3624782..3626056	-	424	118479008	-	BALH_3415	-	insulinase
3231	 39.58	+1	3626255..3627214	-	319	118479009	-	BALH_3416	-	ABC transporter, permease
3232	 39.38	+1	3627215..3628273	-	352	118479010	-	BALH_3417	-	ABC transporter, permease
3233	 36.60	0	3628266..3629825	-	519	118479011	-	BALH_3419	-	ABC transporter, ATP-binding protein
3234	 36.14	0	3629907..3630974	-	355	118479012	-	BALH_3420	-	Bmp family lipoprotein
3235	 36.98	0	3631064..3631804	-	246	118479013	-	BALH_3421	-	GntR family transcriptional regulator
3236	 37.78	0	3632328..3634709	-	793	118479014	ftsK	BALH_3422	-	stage III sporulation protein E
3237	 35.29	0	3634921..3635124	-	67	118479015	-	BALH_3423	-	hypothetical protein
3238	 39.33	+1	3635121..3635870	-	249	118479016	-	BALH_3424	-	ATP-dependent Clp protease proteolytic subunit ClpP
3239	 36.21	0	3635974..3637644	-	556	118479017	-	BALH_3425	-	metallo-beta-lactamase family protein
3240	 23.25	-2	3638149..3638376	+	75	118479018	-	BALH_3426	-	hypothetical protein
3241	 39.14	+1	3638411..3639289	-	292	118479019	-	BALH_3427	-	dihydrodipicolinate synthase
3242	 39.05	+1	3639301..3640542	-	413	118479020	-	BALH_3428	-	aspartate kinase I
3243	 37.62	0	3640557..3641606	-	349	118479021	-	BALH_3429	-	aspartate-semialdehyde dehydrogenase
3244	 39.50	+1	3641754..3642353	-	199	118479022	spoVFB	BALH_3430	-	dipicolinate synthase subunit B
3245	 37.54	0	3642350..3643252	-	300	118479023	dapA	BALH_3431	-	dipicolinate synthase subunit A
3246	 35.93	0	3643527..3643796	-	89	118479024	-	BALH_3432	-	hypothetical protein
3247	 33.49	0	3643905..3645203	-	432	118479025	-	BALH_3433	-	zinc protease
3248	 35.78	0	3645233..3646132	-	299	118479026	-	BALH_3434	-	polysaccharide deacetylase
3249	 39.27	+1	3646284..3648422	-	712	118479027	pnpA	BALH_3435	-	polynucleotide phosphorylase/polyadenylase
3250	 38.89	0	3648583..3648852	-	89	118479028	rpsO	BALH_3436	-	30S ribosomal protein S15
3251	 34.52	0	3648953..3649960	-	335	118479029	-	BALH_3437	-	bifunctional riboflavin kinase/FMN adenylyltransferase
3252	 36.36	0	3649968..3650891	-	307	118479030	truB	BALH_3438	-	tRNA pseudouridine synthase B
3253	 35.57	0	3650978..3651334	-	118	118479031	rbfA	BALH_3439	-	ribosome-binding factor A
3254	 37.59	0	3651350..3651631	-	93	118479032	-	BALH_3440	-	hypothetical protein
3255	 38.57	0	3651628..3653748	-	706	118479033	infB	BALH_3441	-	translation initiation factor IF-2
3256	 44.87	+2	3653693..3654004	-	103	118479034	-	BALH_3442	-	hypothetical protein
3257	 36.88	0	3654005..3654286	-	93	118479035	-	BALH_3443	-	hypothetical protein
3258	 38.66	0	3654289..3655395	-	368	118479036	nusA	BALH_3444	-	transcription elongation factor NusA
3259	 39.81	+1	3655413..3655937	-	174	118479037	-	BALH_3445	-	hypothetical protein
3260	 39.39	+1	3656216..3657667	-	483	118479038	dnaE	BALH_3446	-	DNA polymerase III, alpha subunit
3261	 33.33	0	3657729..3659555	-	608	118479039	-	BALH_3447	-	group II intron
3262	 37.44	0	3660271..3663189	-	972	118479040	polC	BALH_3448	-	DNA polymerase III, alpha subunit
3263	 38.62	0	3663308..3665008	-	566	118479041	proS	BALH_3449	-	prolyl-tRNA synthetase
3264	 36.82	0	3665118..3666380	-	420	118479042	-	BALH_3450	-	peptidase RseP
3265	 38.93	0	3666391..3667533	-	380	162382777	-	BALH_3451	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
3266	 32.83	0	3667557..3668354	-	265	118479044	-	BALH_3453	-	phosphatidate cytidylyltransferase
3267	 38.10	0	3668366..3669142	-	258	118479045	-	BALH_3454	-	undecaprenyl pyrophosphate synthetase
3268	 36.38	0	3669228..3669785	-	185	118479046	frr	BALH_3455	-	ribosome recycling factor
3269	 39.56	+1	3669788..3670510	-	240	118479047	pyrH	BALH_3456	-	uridylate kinase
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.