IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
271	 37.57	0	334996..336531	+	511	118476049	purH	BALH_0292	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
272	 38.29	0	336652..337923	+	423	118476050	purD	BALH_0293	-	phosphoribosylamine--glycine ligase
273	 36.64	0	338142..338987	-	281	118476051	-	BALH_0294	-	SPFH domain-containing protein/band 7 family protein
274	 37.79	0	339197..339667	-	156	118476052	-	BALH_0295	-	hypothetical protein
275	 36.39	0	339847..340599	+	250	118476053	-	BALH_0296	-	geranylgeranylglyceryl phosphate synthase-like protein
276	 38.59	0	340600..342861	+	753	118476054	pcrA	BALH_0297	-	ATP-dependent DNA helicase PcrA
277	 38.31	0	342877..344886	+	669	118476055	ligA	BALH_0298	-	NAD-dependent DNA ligase LigA
278	 36.18	0	344903..346096	+	397	118476056	-	BALH_0299	-	hypothetical protein
279	 32.81	0	346192..346962	+	256	118476057	-	BALH_0300	-	integral membrane protein
280	 40.44	+1	347116..348663	+	515	118476058	rocA	BALH_0301	-	1-pyrroline-5-carboxylate dehydrogenase
281	 35.86	0	349230..349823	-	197	118476059	-	BALH_0302	-	isochorismatase
282	 35.38	0	350164..351285	+	373	118476060	-	BALH_0303	-	ABC transporter, ATP-binding protein
283	 37.09	0	351275..351940	+	221	118476061	-	BALH_0304	-	ABC transporter, permease component
284	 36.49	0	351962..352816	+	284	118476062	-	BALH_0305	-	ABC transporter, substrate-binding protein
285	 33.60	0	353005..353382	+	125	118476063	-	BALH_0306	-	transposase
286	 35.09	0	353517..354257	+	246	118476064	-	BALH_0307	-	transposase
287	 34.30	0	354838..355044	-	68	118476065	-	BALH_0308	-	hypothetical protein
288	 36.55	0	355022..356203	-	393	118476066	arsA	BALH_0309	-	anion-transporting ATPase
289	 34.78	0	356281..356763	-	160	118476067	-	BALH_0310	-	MarR family transcriptional regulator
290	 32.91	0	357004..357240	+	78	118476068	-	BALH_0311	-	hypothetical protein
291	 33.68	0	357382..357672	+	96	118476069	gatC	BALH_0312	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
292	 39.37	+1	357688..359145	+	485	118476070	gatA	BALH_0313	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
293	 37.54	0	359160..360587	+	475	118476071	gatB	BALH_0314	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
294	 39.40	+1	361060..361965	+	301	118476072	-	BALH_0315	-	putative lipid kinase
295	 37.90	0	362105..362848	+	247	118476073	-	BALH_0316	-	haloacid dehalogenase-like hydrolase
296	 39.04	+1	362931..364367	+	478	118476074	gabT	BALH_0317	-	4-aminobutyrate aminotransferase
297	 35.84	0	364453..365847	+	464	118476075	-	BALH_0318	-	sensory box sigma-54 dependent DNA-binding response regulator
298	 41.60	+1	365840..367291	+	483	118476076	gadD	BALH_0319	-	succinate semialdehyde dehydrogenase
299	 37.13	0	367702..369045	-	447	118476077	ampS	BALH_0320	-	aminopeptidase II
300	 35.46	0	369048..370130	-	360	118476078	-	BALH_0321	-	polysaccharide deacetylase
301	 34.51	0	370282..371385	-	367	118476079	-	BALH_0322	-	polysaccharide deacetylase-like protein
302	 36.01	0	371660..372856	-	398	118476080	-	BALH_0323	-	NupC family nucleoside transporter
303	 40.06	+1	373261..374658	+	465	118476081	trmA	BALH_0324	-	RNA methyltransferase
304	 41.35	+1	374734..375744	+	336	118476082	-	BALH_0325	-	dihydrouridine synthase family protein
305	 35.40	0	376046..378079	+	677	118476083	-	BALH_0326	-	GAF sensor signal transduction histidine kinase
306	 36.03	0	378157..378675	+	172	118476084	-	BALH_0327	-	hypothetical protein
307	 36.72	0	378770..379477	+	235	118476085	-	BALH_0328	-	zinc metalloprotease
308	 40.52	+1	379719..380414	-	231	118476086	-	BALH_0329	-	hypothetical protein
309	 39.46	+1	380429..381538	-	369	118476087	-	BALH_0330	-	mandelate racemase/muconate lactonizing enzyme family protein
310	 34.12	0	381631..382902	+	423	118476088	-	BALH_0331	-	hypothetical protein
311	 37.13	0	382891..384312	-	473	118476089	nhaC	BALH_0332	-	Na+/H+ antiporter
312	 38.38	0	384559..385707	+	382	118476090	amhX	BALH_0333	-	amidohydrolase
313	 33.99	0	385859..386467	+	202	118476091	-	BALH_0334	-	methyltransferase
314	 40.80	+1	386514..388040	-	508	118476092	ahpF	BALH_0335	-	alkyl hydroperoxide reductase, subunit F
315	 40.43	+1	388055..388618	-	187	118476093	ahpC	BALH_0336	-	alkyl hydroperoxide reductase, subunit C
316	 35.69	0	389209..390438	+	409	118476094	mtrK	BALH_0337	-	5-methylribose kinase
317	 38.59	0	390448..391494	+	348	118476095	-	BALH_0338	-	translation initiation factor IF-2B subunit alpha
318	 39.20	+1	391543..392190	+	215	118476096	fucA	BALH_0339	-	L-fuculose phosphate aldolase
319	 38.59	0	392231..393238	-	335	118476097	fhuG	BALH_0340	-	iron compound ABC transporter, permease component
320	 39.48	+1	393235..394275	-	346	118476098	fhuB	BALH_0341	-	ferrichrome transport system, permease component
321	 32.79	0	394324..395241	-	305	118476099	fhuD	BALH_0342	-	ferrichrome-binding, periplasmic protein
322	 33.52	0	395574..396623	+	349	118476100	trxB	BALH_0343	-	thioredoxin reductase
323	 33.33	0	396820..397188	-	122	118476101	-	BALH_0344	-	hypothetical protein
324	 30.42	-1	397370..397609	+	79	118476102	-	BALH_0345	-	hypothetical protein
325	 35.63	0	397845..398366	+	173	118476103	cotB	BALH_0346	-	spore coat protein B
326	 29.60	-1	398999..399667	+	222	118476104	-	BALH_0347	-	hypothetical protein
327	 34.43	0	399899..401170	+	423	118476105	-	BALH_0348	-	hypothetical protein
328	 33.59	0	402043..402426	+	127	118476106	-	BALH_0349	-	hypothetical protein
329	 34.75	0	402454..403161	-	235	118476107	-	BALH_0350	-	metal-dependent hydrolase
330	 37.71	0	403426..404544	+	372	118476108	-	BALH_0351	-	hypothetical protein
331	 32.82	0	404666..405448	+	260	118476109	-	BALH_0352	-	hypothetical protein
332	 37.83	0	405463..406773	-	436	118476110	-	BALH_0354	-	MFS family benzoate membrane transporter
333	 36.10	0	406908..408497	-	529	118476111	-	BALH_0355	-	oxidoreductase, with Rieske iron-sulfur protein 2Fe-2S subunit
334	 37.66	0	409015..410100	+	361	118476112	-	BALH_0356	-	fatty acid desaturase
335	 37.46	0	410153..410854	-	233	118476113	glnP	BALH_0357	-	amino acid ABC transporter, permease component
336	 34.21	0	410989..411783	-	264	118476114	glnH	BALH_0358	-	amino acid ABC transporter, periplasmic-binding protein
337	 38.45	0	411905..412627	-	240	118476115	glnQ	BALH_0359	-	amino acid ABC transporter, ATP-binding protein
338	 37.51	0	412838..414130	+	430	118476116	mcpA	BALH_0360	-	methyl-accepting chemotaxis protein
339	 28.32	-2	414275..414733	+	152	118476117	argR	BALH_0361	-	ArgR family transcriptional regulator
340	 34.79	0	415002..416234	+	410	118476118	arcA	BALH_0362	-	arginine deiminase
341	 35.14	0	416265..417263	+	332	118476119	arcB	BALH_0363	-	ornithine carbamoyltransferase
342	 36.28	0	417354..418778	+	474	118476120	arcD	BALH_0365	-	arginine-ornithine antiporter
343	 36.24	0	418816..419778	+	320	118476121	arcC	BALH_0366	-	carbamate kinase
344	 31.30	-1	419978..420667	+	229	118476122	-	BALH_0367	-	Crp family transcriptional regulator
345	 27.01	-2	420696..421502	+	268	118476123	-	BALH_0368	-	hypothetical protein
346	 34.36	0	422021..423781	+	586	118476124	-	BALH_0369	-	alpha-glucosidase
347	 36.63	0	423988..425625	+	545	118476125	ptsG	BALH_0370	-	PTS system glucose-specific IIBC component
348	 33.21	0	425618..426421	+	267	118476126	-	BALH_0371	-	endonuclease/exonuclease/phosphatase family protein
349	 34.85	0	426716..429553	+	945	118476127	-	BALH_0372	-	hypothetical protein
350	 36.39	0	429594..431783	-	729	118476128	topB	BALH_0373	-	DNA topoisomerase III
351	 40.20	+1	432183..432998	+	271	118476129	thiM	BALH_0374	-	hydroxyethylthiazole kinase
352	 38.79	0	433015..433674	+	219	118476130	thiE	BALH_0375	-	thiamine-phosphate pyrophosphorylase
353	 38.96	0	433790..435103	-	437	118476131	dcuA	BALH_0376	-	anaerobic C4-dicarboxylate transporter
354	 33.90	0	435593..437344	+	583	118476132	cheW	BALH_0377	-	methyl-accepting chemotaxis protein
355	 39.56	+1	437608..437928	+	106	118476133	-	BALH_0378	-	hypothetical protein
356	 36.34	0	437876..438673	+	265	118476134	-	BALH_0379	-	ABC transporter, permease component
357	 36.64	0	438670..439668	+	332	118476135	-	BALH_0380	-	ABC transporter, substrate-binding protein
358	 36.67	0	439665..440414	+	249	118476136	-	BALH_0381	-	ABC transporter, ATP-binding protein
359	 32.30	0	440482..441255	+	257	118476137	-	BALH_0382	-	hypothetical protein
360	 34.24	0	441560..442111	+	183	118476138	-	BALH_0383	-	ABC transporter, ATP-binding protein
361	 34.60	0	442153..443103	+	316	118476139	-	BALH_0384	-	ABC transporter, ATP-binding protein
362	 37.37	0	443559..445664	-	701	118476140	chiA	BALH_0385	-	glycosyl hydrolase family chitinase
363	 31.45	-1	445955..446326	+	123	118476141	-	BALH_0386	-	hypothetical protein
364	 31.43	-1	446337..446651	+	104	118476142	-	BALH_0387	-	thioredoxin
365	 37.80	0	446665..446910	+	81	118476143	-	BALH_0388	-	hypothetical protein
366	 31.97	-1	447153..447740	+	195	118476144	-	BALH_0389	-	TetR family transcriptional regulator
367	 36.17	0	447807..449039	+	410	118476145	-	BALH_0391	-	sugar transporter
368	 31.35	-1	449096..449347	+	83	118476146	-	BALH_0393	-	Cro/CI family transcriptional regulator
369	 35.98	0	449779..451062	-	427	118476147	-	BALH_0394	-	major facilitator superfamily permease
370	 36.76	0	451171..452484	-	437	118476148	-	BALH_0395	-	type I phosphodiesterase/nucleotide pyrophosphatase family protein
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.