IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3105	 37.94	0	3479547..3480740	-	397	118478883	-	BALH_3282	-	Oye family NADH-dependent flavin oxidoreductase
3106	 32.54	0	3481256..3481759	-	167	118478884	-	BALH_3283	-	CarD family transcriptional regulator
3107	 38.89	0	3481979..3482950	-	323	118478885	hutG	BALH_3284	-	formimidoylglutamase
3108	 40.25	+1	3482929..3484200	-	423	118478886	hutI	BALH_3285	-	imidazolonepropionase
3109	 41.47	+1	3484213..3485871	-	552	118478887	-	BALH_3286	-	urocanate hydratase
3110	 39.66	+1	3485895..3487412	-	505	118478888	-	BALH_3287	-	histidine ammonia-lyase
3111	 43.54	+2	3487517..3487957	-	146	118478889	hutP	BALH_3288	-	anti-terminator HutP
3112	 35.29	0	3488131..3489099	+	322	118478890	-	BALH_3289	-	ubiquinone/menaquinone methyltransferase
3113	 36.20	0	3489113..3489706	-	197	118478891	-	BALH_3290	-	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme
3114	 30.43	-1	3489682..3490335	-	217	118478892	-	BALH_3291	-	hypothetical protein
3115	 32.32	0	3490515..3490811	+	98	118478893	-	BALH_3292	-	hypothetical protein
3116	 32.43	0	3490915..3491355	+	146	118478894	-	BALH_3293	-	hypothetical protein
3117	 39.30	+1	3491385..3492440	-	351	118478895	-	BALH_3295	-	hypothetical protein
3118	 38.80	0	3492490..3493569	-	359	118478896	-	BALH_3297	-	hypothetical protein
3119	 39.76	+1	3493838..3501400	+	2520	118478897	-	BALH_3298	-	hypothetical protein
3120	 32.35	0	3501463..3501969	-	168	118478898	-	BALH_3299	-	cyotchrome c defective protein
3121	 33.86	0	3502060..3502824	-	254	118478899	-	BALH_3300	-	cytochrome c-type biogenesis protein (holocytochrome-c synthase)
3122	 35.53	0	3503255..3504163	+	302	118478900	-	BALH_3302	-	drug/metabolite exporter family protein
3123	 38.92	0	3504251..3505396	+	381	118478901	-	BALH_3303	-	N-acyl-L-amino acid amidohydrolase
3124	 33.76	0	3505434..3506378	-	314	118478902	-	BALH_3305	-	bacitracin transport permease
3125	 35.84	0	3506371..3507366	-	331	118478903	bcrA	BALH_3306	-	bacitracin transport ATP-binding protein
3126	 29.69	-1	3507373..3507948	-	191	118478904	-	BALH_3307	-	ABC transporter permease
3127	 35.81	0	3508179..3509108	-	309	118478905	-	BALH_3308	-	LysR family transcriptional regulator
3128	 37.25	0	3509536..3510276	+	246	118478906	-	BALH_3309	-	murein hydrolase export regulator
3129	 35.24	0	3510289..3510708	-	139	118478907	-	BALH_3310	-	MutT/NUDIX family protein
3130	 33.83	0	3510844..3511044	+	66	118478908	-	BALH_3311	-	hypothetical protein
3131	 36.14	0	3511360..3512178	-	272	118478909	-	BALH_3312	-	permease
3132	 36.58	0	3512535..3514319	-	594	118478910	-	BALH_3313	-	N-acetylmuramoyl-L-alanine amidase
3133	 32.10	-1	3514478..3515044	-	188	118478911	-	BALH_3314	-	hypothetical protein
3134	 31.08	-1	3515051..3516070	-	339	118478912	-	BALH_3315	-	hypothetical protein
3135	 32.88	0	3516190..3517956	-	588	118478913	-	BALH_3316	-	ABC transporter, ATP-binding and permease component
3136	 36.99	0	3517953..3519704	-	583	118478914	-	BALH_3317	-	ABC transporter, ATP-binding and permease component
3137	 33.33	0	3520128..3520568	-	146	118478915	-	BALH_3318	-	hypothetical protein
3138	 40.72	+1	3520725..3522767	-	680	118478916	-	BALH_3319	-	transketolase
3139	 37.69	0	3523028..3523831	-	267	118478917	-	BALH_3321	-	phosphonate ABC transporter, permease
3140	 37.61	0	3523831..3524625	-	264	118478918	-	BALH_3322	-	phosphonate ABC transporter, permease
3141	 37.86	0	3524622..3525395	-	257	118478919	phnC	BALH_3323	-	phosphonate ABC transporter, ATP-binding protein
3142	 33.93	0	3525479..3526480	-	333	118478920	-	BALH_3324	-	phosphonate ABC transporter, phosphate-binding protein
3143	 33.90	0	3526603..3528186	+	527	118478921	cpdC	BALH_3325	-	2',3'-cyclic-nucleotide 2'-phosphodiesterase
3144	 33.75	0	3528226..3528465	-	79	118478922	-	BALH_3326	-	hypothetical protein
3145	 34.70	0	3528511..3529167	-	218	118478923	-	BALH_3327	-	site-specific recombinase
3146	 39.29	+1	3529309..3529929	+	206	118478924	-	BALH_3328	-	LexA repressor
3147	 34.08	0	3530031..3530834	-	267	118478925	-	BALH_3329	-	hypothetical protein
3148	 35.53	0	3530835..3531425	-	196	118478926	-	BALH_3330	-	hypothetical protein
3149	 38.90	0	3531993..3533357	-	454	118478927	-	BALH_3331	-	L-glutamine synthetase
3150	 33.85	0	3533376..3533765	-	129	118478928	-	BALH_3332	-	MerR family transcriptional regulator
3151	 38.92	0	3533941..3535212	-	423	118478929	-	BALH_3333	-	aluminum resistance protein
3152	 36.62	0	3535205..3536482	-	425	118478930	-	BALH_3334	-	GTP-binding protein
3153	 39.90	+1	3536572..3537195	+	207	118478931	-	BALH_3335	-	hypothetical protein
3154	 35.32	0	3537467..3538423	-	318	118478932	spoVK	BALH_3336	-	stage V sporulation protein K
3155	 33.82	0	3538465..3539502	+	345	118478933	-	BALH_3337	-	phage integrase
3156	 54.45	+2	3539616..3542153	+	845	118478934	-	BALH_3338	-	triple helix repeat-containing collagen
3157	 57.03	+2	3540115..3543924	+	1269	118478935	-	BALH_3339	-	triple helix repeat-containing collagen
3158	 30.67	-1	3544005..3544229	-	74	118478936	hfq	BALH_3340	-	RNA-binding protein Hfq
3159	 37.07	0	3544251..3545213	-	320	118478937	miaA	BALH_3341	-	tRNA delta(2)-isopentenylpyrophosphate transferase
3160	 28.86	-2	3545386..3545631	+	81	118478938	-	BALH_3342	-	hypothetical protein
3161	 38.91	0	3545694..3546626	-	310	118478939	-	BALH_3343	-	enterotoxin/cell-wall binding protein
3162	 37.96	0	3546974..3548830	-	618	118478940	fruA	BALH_3344	-	PTS fructose-specific enzyme IIBC component
3163	 36.62	0	3548844..3549755	-	303	118478941	-	BALH_3345	-	1-phosphofructokinase
3164	 35.05	0	3549752..3550567	-	271	118478942	-	BALH_3346	-	DeoR family transcriptional regulator
3165	 36.51	0	3550663..3551826	-	387	118478943	-	BALH_3347	-	NADH-dependent butanol dehydrogenase A
3166	 33.16	0	3551943..3552509	-	188	118478944	-	BALH_3348	-	hypothetical protein
3167	 37.20	0	3553250..3554644	-	464	118478945	gabP	BALH_3350	-	gamma-aminobutyrate permease
3168	 37.78	0	3555000..3556100	+	366	118478946	-	BALH_3351	-	glycosyl hydrolase family chitinase
3169	 34.12	0	3556297..3557190	-	297	118478947	-	BALH_3352	-	Ser/thr protein phosphatase family protein
3170	 36.89	0	3557387..3558202	+	271	118478948	-	BALH_3353	-	formate transporter
3171	 37.59	0	3558337..3558618	+	93	118478949	-	BALH_3354	-	HU family DNA-binding protein
3172	 36.92	0	3558730..3561156	-	808	118478950	-	BALH_3355	-	heavy metal-transporting ATPase
3173	 36.23	0	3561243..3561449	-	68	118478951	-	BALH_3356	-	copper-ion-binding protein
3174	 32.34	0	3561638..3561940	-	100	118478952	-	BALH_3357	-	hypothetical protein
3175	 32.46	0	3562232..3562459	-	75	118478953	-	BALH_3358	-	hypothetical protein
3176	 34.62	0	3562762..3563151	-	129	118478954	-	BALH_3359	-	LuxR family transcriptional regulator
3177	 34.80	0	3563343..3564161	-	272	118478955	-	BALH_3360	-	esterase
3178	 34.67	0	3564178..3564999	-	273	118478956	-	BALH_3361	-	bacillibactin ABC transporter ATPase protein
3179	 35.87	0	3565014..3566036	-	340	118478957	-	BALH_3363	-	bacillibactin ABC transporter integral membrane protein
3180	 36.58	0	3566029..3567045	-	338	118478958	fecD	BALH_3364	-	bacillibactin ABC transporter integral membrane protein
3181	 33.54	0	3567064..3568029	-	321	118478959	feuA	BALH_3365	-	bacillibactin ABC transporter substrate-binding protein
3182	 26.95	-2	3568085..3568225	+	46	118478960	-	BALH_3366	-	hypothetical protein
3183	 35.31	0	3568329..3569087	-	252	118478961	-	BALH_3367	-	exodeoxyribonuclease III
3184	 35.51	0	3569242..3569838	+	198	118478962	adaA	BALH_3368	-	AraC family transcriptional regulator
3185	 34.09	0	3569819..3570349	+	176	118478963	-	BALH_3369	-	methylated-DNA--protein-cysteine S-methyltransferase
3186	 33.77	0	3570346..3571257	+	303	118478964	-	BALH_3370	-	DNA-3-methyladenine glycosylase II
3187	 36.25	0	3571294..3572526	-	410	118478965	-	BALH_3371	-	peptidase T
3188	 34.55	0	3572618..3573358	+	246	118478966	-	BALH_3373	-	hypothetical protein
3189	 33.96	0	3573449..3573766	-	105	118478967	-	BALH_3374	-	hypothetical protein
3190	 31.77	-1	3574090..3574665	-	191	118478968	pgm	BALH_3375	-	phosphoglycerate mutase
3191	 34.31	0	3574696..3575511	-	271	118478969	-	BALH_3376	-	alpha/beta fold family hydrolase
3192	 36.26	0	3575696..3575968	-	90	118478970	-	BALH_3377	-	glyoxylase family protein
3193	 30.48	-1	3576513..3579242	+	909	118478971	-	BALH_3378	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
3194	 35.02	0	3579343..3580407	-	354	118478972	murG	BALH_3379	-	N-acetylglucosaminyl transferase
3195	 30.22	-1	3580456..3580776	-	106	118478973	-	BALH_3380	-	hypothetical protein
3196	 33.33	0	3580802..3581713	-	303	118478974	-	BALH_3381	-	UDP-2-acetamido-2,6-dideoxy-hexulose 4-reductase
3197	 34.13	0	3581710..3582714	-	334	118478975	-	BALH_3382	-	UDP-N-acetylglucosamine 4,6-dehydratase
3198	 33.58	0	3582965..3584164	+	399	118478976	-	BALH_3383	-	hypothetical protein
3199	 32.16	-1	3584605..3585369	-	254	118478977	-	BALH_3384	-	HAD superfamily hydrolase
3200	 33.77	0	3585439..3586128	+	229	118478978	-	BALH_3385	-	Crp/FNR family transcriptional regulator
3201	 31.27	-1	3586192..3586773	-	193	118478979	-	BALH_3386	-	hypothetical protein
3202	 37.73	0	3587003..3588436	-	477	118478980	-	BALH_3387	-	GntR family transcriptional regulator
3203	 31.62	-1	3589229..3590218	-	329	118478981	-	BALH_3388	-	glycosylphosphatidylinositol diacylglycerol-lyase
3204	 34.91	0	3590396..3592237	-	613	118478982	-	BALH_3389	-	serine protease
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.