IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3035	 38.56	0	3397209..3398030	-	273	118478813	-	BALH_3207	-	formate/nitrite transporter
3036	 36.18	0	3398178..3399194	-	338	118478814	moaA	BALH_3208	-	molybdenum cofactor biosynthesis protein A
3037	 34.59	0	3399215..3400012	-	265	118478815	fdhD	BALH_3209	-	formate dehydrogenase accessory protein
3038	 34.49	0	3400029..3400373	-	114	118478816	-	BALH_3210	-	hypothetical protein
3039	 34.78	0	3400489..3400971	-	160	118478817	-	BALH_3211	-	hypothetical protein
3040	 39.78	+1	3400984..3404022	-	1012	118478818	-	BALH_3212	-	formate dehydrogenase, alpha subunit
3041	 38.01	0	3404371..3405909	+	512	118478819	gerKA	BALH_3213	-	spore germination protein
3042	 34.79	0	3405906..3407003	+	365	118478820	gerSB	BALH_3214	-	spore germination protein SB
3043	 32.81	0	3407004..3408140	+	378	118478821	gerQC	BALH_3215	-	spore germination protein
3044	 36.29	0	3408412..3411894	-	1160	118478822	-	BALH_3216	-	hypothetical protein
3045	 35.57	0	3411848..3414040	-	730	118478823	-	BALH_3217	-	hypothetical protein
3046	 37.20	0	3414198..3414533	-	111	118478824	-	BALH_3218	-	hypothetical protein
3047	 52.78	+2	3414847..3415062	-	71	118478825	-	BALH_3220	-	hypothetical protein
3048	 37.64	0	3415107..3415826	-	239	118478826	-	BALH_3221	-	methyltransferase
3049	 35.02	0	3415910..3417688	-	592	118478827	oppA	BALH_3222	-	oligopeptide transporter, periplasmic-binding protein
3050	 35.97	0	3418549..3420255	-	568	118478828	oppA	BALH_3223	-	oligopeptide transporter, periplasmic-binding protein
3051	 36.14	0	3420595..3422307	-	570	118478829	oppA	BALH_3224	-	oligopeptide transporter, periplasmic-binding protein
3052	 35.63	0	3422655..3423917	-	420	118478830	dctA	BALH_3225	-	C4-dicarboxylate transporter DctA
3053	 32.66	0	3424117..3425154	-	345	118478831	lytR	BALH_3227	-	transcriptional regulator LytR, attenuator for lytABC and lytR expression
3054	 30.95	-1	3425170..3426177	-	335	118478832	-	BALH_3228	-	hypothetical protein
3055	 32.02	-1	3426181..3426714	-	177	118478833	sigW	BALH_3229	-	ECF subfamily RNA polymerase sigma factor
3056	 25.29	-2	3427092..3427601	+	169	118478834	-	BALH_3230	-	hypothetical protein
3057	 33.58	0	3428199..3429005	-	268	118478835	-	BALH_3232	-	ABC transporter, permease component
3058	 35.68	0	3428998..3429891	-	297	118478836	berA	BALH_3233	-	ABC transporter, ATP-binding protein
3059	 29.34	-1	3429924..3430649	+	241	118478837	-	BALH_3234	-	TetR family transcriptional regulator
3060	 35.08	0	3430674..3431705	-	343	118478838	-	BALH_3235	-	Gfo/Idh/MocA family oxidoreductase
3061	 30.43	-1	3431951..3433498	-	515	118478839	-	BALH_3236	-	IS605 family transposase
3062	 37.13	0	3433775..3436198	-	807	118478840	-	BALH_3237	-	DNA topoisomerase IV subunit A
3063	 38.98	0	3436200..3438164	-	654	118478841	-	BALH_3238	-	DNA topoisomerase IV subunit B
3064	 34.78	0	3438541..3438954	-	137	118478842	-	BALH_3239	-	CoA-binding domain-containing protein
3065	 36.77	0	3439034..3440401	-	455	118478843	-	BALH_3241	-	serine protease
3066	 34.81	0	3440478..3441155	-	225	118478844	-	BALH_3242	-	transcriptional regulatory protein
3067	 35.98	0	3441175..3441627	-	150	118478845	-	BALH_3243	-	ribonucleoside-triphosphate reductase class III activase subunit
3068	 37.43	0	3441624..3443480	-	618	118478846	-	BALH_3244	-	anaerobic ribonucleoside triphosphate reductase
3069	 37.35	0	3443706..3444302	+	198	118478847	-	BALH_3245	-	putative glycerol-3-phosphate acyltransferase PlsY
3070	 34.31	0	3444396..3444701	+	101	118478848	-	BALH_3246	-	hypothetical protein
3071	 36.43	0	3444728..3445147	-	139	118478849	-	BALH_3247	-	4-hydroxybenzoyl-CoA thioesterase
3072	 38.28	0	3445257..3446549	+	430	118478850	-	BALH_3248	-	glycosyl hydrolase
3073	 31.31	-1	3446578..3446775	-	65	118478851	-	BALH_3249	-	small acid-soluble spore protein Tlp
3074	 33.44	0	3447336..3448283	-	315	118478852	dnaE	BALH_3250	-	DNA polymerase III subunit epsilon
3075	 35.94	0	3448399..3448974	-	191	118478853	-	BALH_3251	-	AhpC/TSA family protein
3076	 36.19	0	3449507..3451222	-	571	118478854	-	BALH_3252	-	ABC transporter, ATP-binding protein and permease component
3077	 39.32	+1	3451274..3453997	-	907	118478855	-	BALH_3253	-	aconitate hydratase
3078	 34.02	0	3454479..3455204	-	241	118478856	-	BALH_3254	-	peptidoglycan N-acetylglucosamine deacetylase
3079	 35.23	0	3455251..3455514	-	87	118478857	-	BALH_3255	-	hypothetical protein
3080	 31.57	-1	3455874..3456269	+	131	118478858	-	BALH_3256	-	spore coat protein M
3081	 32.61	0	3456313..3456588	-	91	118478859	-	BALH_3257	-	multidrug resistance protein
3082	 29.95	-1	3456646..3457059	-	137	118478860	-	BALH_3258	-	hypothetical protein
3083	 36.81	0	3457158..3458393	+	411	118478861	alaS	BALH_3259	-	alanine--tRNA ligase
3084	 34.36	0	3458438..3458926	-	162	118478862	-	BALH_3260	-	MutT/NUDIX family protein
3085	 35.05	0	3458986..3459567	+	193	118478863	-	BALH_3261	-	hypothetical protein
3086	 41.28	+1	3459575..3460744	-	389	118478864	mmgA	BALH_3262	-	acetyl-CoA acetyltransferase
3087	 34.60	0	3460677..3462338	-	553	118478865	fadD	BALH_3263	-	acyl-CoA synthetase
3088	 36.81	0	3462188..3462763	-	191	118478866	bioY	BALH_3264	-	bioY family protein
3089	 38.91	0	3462887..3464500	-	537	118478867	alkK	BALH_3265	-	medium-chain-fatty-acid--CoA ligase
3090	 29.95	-1	3464637..3465287	-	216	118478868	-	BALH_3266	-	hypothetical protein
3091	 30.46	-1	3465288..3465635	-	115	118478869	-	BALH_3267	-	ABC transporter, ATP-binding protein
3092	 35.07	0	3466258..3467064	+	268	118478870	-	BALH_3268	-	acetyltransferase
3093	 30.99	-1	3467236..3467448	+	70	118478871	-	BALH_3269	-	hypothetical protein
3094	 35.09	0	3467574..3469106	-	510	118478872	-	BALH_3270	-	S-layer protein
3095	 30.95	-1	3469473..3469724	-	83	118478873	-	BALH_3272	-	hypothetical protein
3096	 32.51	0	3469736..3470218	-	160	118478874	-	BALH_3273	-	N-acetylmuramoyl-L-alanine amidase
3097	 35.40	0	3470208..3471029	-	273	118478875	-	BALH_3274	-	hypothetical protein
3098	 35.12	0	3471126..3471965	+	279	118478876	-	BALH_3275	-	hypothetical protein
3099	 36.29	0	3471986..3472357	-	123	118478877	-	BALH_3276	-	glyoxalase/bleomycin resistance protein
3100	 33.53	0	3472576..3474126	+	516	118478878	kinA	BALH_3277	-	PAS/PAC sensor signal transduction histidine kinase
3101	 36.93	0	3474182..3474793	-	203	118478879	-	BALH_3278	-	phospholipase/carboxylesterase family protein
3102	 37.97	0	3474818..3475765	-	315	118478880	-	BALH_3279	-	glyoxalase/bleomycin resistance protein
3103	 36.84	0	3476142..3477623	-	493	118478881	-	BALH_3280	-	sodium/proline symporter
3104	 37.48	0	3477911..3479479	-	522	118478882	-	BALH_3281	-	ferredoxin-dependent glutamate synthase
3105	 37.94	0	3479547..3480740	-	397	118478883	-	BALH_3282	-	Oye family NADH-dependent flavin oxidoreductase
3106	 32.54	0	3481256..3481759	-	167	118478884	-	BALH_3283	-	CarD family transcriptional regulator
3107	 38.89	0	3481979..3482950	-	323	118478885	hutG	BALH_3284	-	formimidoylglutamase
3108	 40.25	+1	3482929..3484200	-	423	118478886	hutI	BALH_3285	-	imidazolonepropionase
3109	 41.47	+1	3484213..3485871	-	552	118478887	-	BALH_3286	-	urocanate hydratase
3110	 39.66	+1	3485895..3487412	-	505	118478888	-	BALH_3287	-	histidine ammonia-lyase
3111	 43.54	+2	3487517..3487957	-	146	118478889	hutP	BALH_3288	-	anti-terminator HutP
3112	 35.29	0	3488131..3489099	+	322	118478890	-	BALH_3289	-	ubiquinone/menaquinone methyltransferase
3113	 36.20	0	3489113..3489706	-	197	118478891	-	BALH_3290	-	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme
3114	 30.43	-1	3489682..3490335	-	217	118478892	-	BALH_3291	-	hypothetical protein
3115	 32.32	0	3490515..3490811	+	98	118478893	-	BALH_3292	-	hypothetical protein
3116	 32.43	0	3490915..3491355	+	146	118478894	-	BALH_3293	-	hypothetical protein
3117	 39.30	+1	3491385..3492440	-	351	118478895	-	BALH_3295	-	hypothetical protein
3118	 38.80	0	3492490..3493569	-	359	118478896	-	BALH_3297	-	hypothetical protein
3119	 39.76	+1	3493838..3501400	+	2520	118478897	-	BALH_3298	-	hypothetical protein
3120	 32.35	0	3501463..3501969	-	168	118478898	-	BALH_3299	-	cyotchrome c defective protein
3121	 33.86	0	3502060..3502824	-	254	118478899	-	BALH_3300	-	cytochrome c-type biogenesis protein (holocytochrome-c synthase)
3122	 35.53	0	3503255..3504163	+	302	118478900	-	BALH_3302	-	drug/metabolite exporter family protein
3123	 38.92	0	3504251..3505396	+	381	118478901	-	BALH_3303	-	N-acyl-L-amino acid amidohydrolase
3124	 33.76	0	3505434..3506378	-	314	118478902	-	BALH_3305	-	bacitracin transport permease
3125	 35.84	0	3506371..3507366	-	331	118478903	bcrA	BALH_3306	-	bacitracin transport ATP-binding protein
3126	 29.69	-1	3507373..3507948	-	191	118478904	-	BALH_3307	-	ABC transporter permease
3127	 35.81	0	3508179..3509108	-	309	118478905	-	BALH_3308	-	LysR family transcriptional regulator
3128	 37.25	0	3509536..3510276	+	246	118478906	-	BALH_3309	-	murein hydrolase export regulator
3129	 35.24	0	3510289..3510708	-	139	118478907	-	BALH_3310	-	MutT/NUDIX family protein
3130	 33.83	0	3510844..3511044	+	66	118478908	-	BALH_3311	-	hypothetical protein
3131	 36.14	0	3511360..3512178	-	272	118478909	-	BALH_3312	-	permease
3132	 36.58	0	3512535..3514319	-	594	118478910	-	BALH_3313	-	N-acetylmuramoyl-L-alanine amidase
3133	 32.10	-1	3514478..3515044	-	188	118478911	-	BALH_3314	-	hypothetical protein
3134	 31.08	-1	3515051..3516070	-	339	118478912	-	BALH_3315	-	hypothetical protein
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.