IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2823	 38.54	0	3166084..3166275	+	63	118478601	-	BALH_2978	-	hypothetical protein
2824	 29.74	-1	3166308..3167030	-	240	118478602	-	BALH_2979	-	hypothetical protein
2825	 37.07	0	3167214..3167936	-	240	118478603	-	BALH_2981	-	hypothetical protein
2826	 36.16	0	3167888..3169549	-	553	118478604	cbiO	BALH_2982	-	cobalt ABC transporter, ATP-binding protein
2827	 34.24	0	3169522..3170400	-	292	118478605	-	BALH_2983	-	cobalt ABC transporter, permease
2828	 39.33	+1	3170423..3171256	-	277	118478606	-	BALH_2984	-	hypothetical protein
2829	 37.81	0	3171301..3173154	-	617	118478607	-	BALH_2985	-	cell wall anchor domain-containing protein
2830	 38.33	0	3173463..3173942	-	159	118478608	-	BALH_2986	-	ribonuclease activity regulator protein RraA
2831	 38.57	0	3174143..3175573	+	476	118478609	-	BALH_2987	-	transporter
2832	 36.59	0	3175720..3176547	-	275	118478610	-	BALH_2988	-	extracellular ribonuclease
2833	 35.35	0	3177072..3178061	-	329	118478611	mtn	BALH_2989	-	putative 5-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase
2834	 34.37	0	3178514..3178900	-	128	118478612	-	BALH_2991	-	putative transposase
2835	 38.53	0	3180001..3181020	-	339	118478613	-	BALH_2992	-	hypothetical protein
2836	 33.60	0	3181030..3182154	-	374	118478614	-	BALH_2993	-	transcriptional regulator
2837	 33.96	0	3182773..3184380	+	535	118478615	znuA	BALH_2994	-	high-affinity zinc uptake system periplasmic-binding protein
2838	 34.32	0	3185041..3186456	-	471	118478616	-	BALH_2995	-	GntR family transcriptional regulator
2839	 35.31	0	3186574..3187533	+	319	118478617	putA	BALH_2996	-	L-proline dehydrogenase
2840	 38.36	0	3188817..3189293	-	158	118478618	-	BALH_2997	-	transcriptional regulator
2841	 38.47	0	3189492..3191654	-	720	118478619	adp	BALH_2998	-	alkaline D-peptidase
2842	 35.56	0	3191923..3193716	+	597	118478620	-	BALH_2999	-	DNA-binding response regulator
2843	 37.68	0	3193941..3195275	+	444	118478621	-	BALH_3000	-	histidyl-tRNA synthetase
2844	 33.33	0	3195447..3195758	+	103	118478622	-	BALH_3001	-	hypothetical protein
2845	 37.00	0	3196024..3196623	+	199	118478623	-	BALH_3002	-	hypothetical protein
2846	 31.47	-1	3197125..3197874	+	249	118478624	-	BALH_3003	-	nitroreductase family protein
2847	 37.37	0	3198007..3198303	+	98	118478625	-	BALH_3004	-	hypothetical protein
2848	 35.79	0	3198350..3199450	-	366	118478626	pykA	BALH_3005	-	pyruvate kinase
2849	 34.03	0	3199501..3200217	-	238	118478627	-	BALH_3006	-	hypothetical protein
2850	 39.53	+1	3200556..3201314	-	252	118478628	-	BALH_3007	-	3-ketoacyl-(acyl-carrier-protein) reductase
2851	 32.31	0	3201371..3203029	-	552	118478629	-	BALH_3010	-	ABC transporter permease
2852	 36.19	0	3203022..3203756	-	244	118478630	-	BALH_3011	-	ABC transporter, ATP-binding protein
2853	 38.24	0	3204555..3204758	+	67	118478631	-	BALH_3012	-	transcriptional regulator
2854	 36.86	0	3204814..3205776	-	320	118478632	-	BALH_3013	-	hypothetical protein
2855	 35.16	0	3205909..3206619	-	236	118478633	-	BALH_3014	-	HAD superfamily hydrolase
2856	 33.51	0	3206775..3207932	-	385	118478634	-	BALH_3015	-	transposase
2857	 31.28	-1	3207929..3208171	-	80	118478635	-	BALH_3016	-	transposase
2858	 32.87	0	3208290..3208505	-	71	118478636	hin	BALH_3017	-	DNA invertase
2859	 33.10	0	3208876..3209301	+	141	118478637	-	BALH_3018	-	hypothetical protein
2860	 37.63	0	3209340..3210362	-	340	118478638	-	BALH_3019	-	protein-tyrosine-phosphatase
2861	 36.27	0	3210452..3211336	-	294	118478639	-	BALH_3020	-	hypothetical protein
2862	 32.37	0	3211340..3212062	-	240	118478640	-	BALH_3021	-	acetyltransferase
2863	 32.26	-1	3212186..3213025	+	279	118478641	-	BALH_3022	-	hypothetical protein
2864	 37.01	0	3213043..3213504	+	153	118478642	-	BALH_3023	-	MutT/NUDIX family protein
2865	 34.31	0	3213603..3214013	-	136	118478643	-	BALH_3024	-	glyoxylase family protein (lactoylglutathione lyase)
2866	 33.52	0	3214045..3215097	-	350	118478644	-	BALH_3025	-	ROK family protein
2867	 40.07	+1	3215196..3216398	-	400	118478645	-	BALH_3028	-	sugar (and other) transporter
2868	 38.75	0	3216446..3217054	-	202	118478646	maa	BALH_3029	-	maltose O-acetyltransferase
2869	 31.74	-1	3217306..3218436	-	376	118478647	-	BALH_3030	-	permease
2870	 36.55	0	3218491..3218739	-	82	118478648	-	BALH_3031	-	hypothetical protein
2871	 31.72	-1	3218843..3219337	+	164	118478649	-	BALH_3032	-	acetyltransferase
2872	 36.24	0	3219814..3220569	-	251	118478650	-	BALH_3033	-	ubiE/COQ5 methyltransferase family protein
2873	 35.88	0	3220611..3221159	-	182	118478651	-	BALH_3034	-	hypothetical protein
2874	 33.33	0	3221266..3222447	+	393	118478652	-	BALH_3035	-	major facilitator family protein
2875	 33.88	0	3222504..3223418	-	304	118478653	-	BALH_3036	-	TPR repeat-containing protein
2876	 31.06	-1	3223685..3224080	+	131	118478654	-	BALH_3037	-	hypothetical protein
2877	 34.43	0	3224472..3225020	-	182	118478655	-	BALH_3038	-	hypothetical protein
2878	 37.44	0	3225219..3225632	-	137	118478656	-	BALH_3040	-	ATP synthase protein I
2879	 35.74	0	3225685..3227013	-	442	118478657	-	BALH_3041	-	hypothetical protein
2880	 37.75	0	3227133..3227540	-	135	118478658	-	BALH_3042	-	MerR family transcriptional regulator
2881	 34.58	0	3227988..3228872	+	294	118478659	-	BALH_3043	-	DMT family permease
2882	 38.26	0	3228919..3229791	-	290	118478660	-	BALH_3044	-	pentapeptide repeat-containing protein
2883	 35.77	0	3230298..3231365	-	355	118478661	-	BALH_3045	-	hypothetical protein
2884	 37.94	0	3231486..3233027	-	513	118478662	-	BALH_3046	-	gluconate kinase (2-dehydro-3-deoxygluconokinase)
2885	 36.25	0	3233083..3234522	-	479	118478663	-	BALH_3048	-	gluconate permease
2886	 37.82	0	3234799..3235467	-	222	162382779	-	BALH_3049	-	putative translaldolase
2887	 37.92	0	3235519..3236412	-	297	162382778	-	BALH_3050	-	6-phosphogluconate dehydrogenase-like protein
2888	 39.81	+1	3236517..3238538	-	673	118478666	-	BALH_3051	-	transketolase
2889	 37.85	0	3238551..3240035	-	494	118478667	-	BALH_3052	-	glucose-6-phosphate 1-dehydrogenase
2890	 34.71	0	3241232..3241741	-	169	118478668	-	BALH_3054	-	hypothetical protein
2891	 32.91	0	3241983..3242456	-	157	118478669	-	BALH_3055	-	hypothetical protein
2892	 34.72	0	3242513..3243883	-	456	118478670	-	BALH_3056	-	serine transporter
2893	 30.17	-1	3244843..3245538	-	231	118478671	-	BALH_3057	-	hypothetical protein
2894	 34.23	0	3245621..3245956	-	111	118478672	-	BALH_3058	-	hypothetical protein
2895	 37.68	0	3246084..3246497	-	137	118478673	-	BALH_3059	-	BadM/Rrf2 family transcriptional regulator
2896	 32.07	-1	3246841..3247236	-	131	118478674	-	BALH_3060	-	transcriptional regulator Spx
2897	 39.11	+1	3248142..3248885	-	247	118478675	-	BALH_3061	-	GntR family transcriptional regulator
2898	 36.88	0	3248912..3249982	-	356	118478676	-	BALH_3062	-	Gfo/Idh/MocA family oxidoreductase
2899	 40.19	+1	3250101..3250523	+	140	118478677	-	BALH_3063	-	hypothetical protein
2900	 36.68	0	3250568..3251134	-	188	118478678	-	BALH_3064	-	esterase
2901	 37.35	0	3251151..3252047	-	298	118478679	-	BALH_3065	-	metallo-beta-lactamase family protein
2902	 33.69	0	3252004..3252561	-	185	118478680	-	BALH_3066	-	hypothetical protein
2903	 33.75	0	3252589..3253542	-	317	118478681	-	BALH_3067	-	hypothetical protein
2904	 36.67	0	3253604..3253813	+	69	118478682	-	BALH_3068	-	hypothetical protein
2905	 35.78	0	3253846..3254745	-	299	118478683	-	BALH_3069	-	PhzF family phenazine biosynthesis protein
2906	 33.96	0	3254742..3255536	-	264	118478684	-	BALH_3070	-	acetyltransferase
2907	 36.17	0	3255530..3256234	-	234	118478685	-	BALH_3071	-	short chain dehydrogenase
2908	 36.17	0	3256231..3256794	-	187	118478686	-	BALH_3072	-	acetyltransferase
2909	 32.79	0	3256954..3257502	-	182	118478687	-	BALH_3073	-	acetyltransferase
2910	 35.80	0	3257668..3258966	-	432	118478688	-	BALH_3074	-	long-chain-fatty-acid--CoA ligase
2911	 32.40	0	3259303..3259839	-	178	118478689	-	BALH_3075	-	NAD(P)H oxidoreductase
2912	 32.21	-1	3260478..3261278	-	266	118478690	-	BALH_3076	-	hypothetical protein
2913	 34.65	0	3261624..3262835	+	403	118478691	-	BALH_3077	-	ankyrin repeat-containing protein
2914	 31.16	-1	3262996..3263271	-	91	118478692	-	BALH_3078	-	ArsR family transcriptional regulator
2915	 34.14	0	3263500..3266859	-	1119	118478693	-	BALH_3079	-	glycosyl transferase and polysaccharide deacetylase fusion protein
2916	 39.84	+1	3267079..3268446	-	455	118478694	-	BALH_3080	-	membrane associated protein
2917	 33.87	0	3268436..3269182	-	248	118478695	-	BALH_3081	-	putative RNA polymerase sigma factor SigI
2918	 30.89	-1	3269934..3270587	-	217	118478696	-	BALH_3082	-	CAAX amino terminal protease family protein
2919	 33.84	0	3271257..3271847	+	196	118478697	-	BALH_3083	-	TetR family transcriptional regulator
2920	 34.22	0	3272526..3273089	-	187	118478698	-	BALH_3084	-	hypothetical protein
2921	 34.48	0	3273116..3274078	+	320	118478699	-	BALH_3085	-	DeoR family transcriptional regulator
2922	 30.77	-1	3275247..3275714	-	155	118478700	-	BALH_3086	-	hypothetical protein
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.