IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2748	 36.02	0	3075539..3076915	-	458	118478526	-	BALH_2901	-	sensor histidine kinase
2749	 36.73	0	3076917..3077594	-	225	118478527	-	BALH_2902	-	two-component response regulator
2750	 30.26	-1	3077675..3078358	-	227	118478528	-	BALH_2904	-	hypothetical protein
2751	 30.91	-1	3078455..3078907	+	150	118478529	-	BALH_2905	-	MarR family transcriptional regulator
2752	 30.64	-1	3078933..3079451	+	172	118478530	paiA	BALH_2906	-	spermine/spermidine N-acetyltransferase
2753	 32.21	-1	3079475..3080098	+	207	118478531	paiB	BALH_2907	-	protease synthase and sporulation negative regulatory protein PAI 2
2754	 36.85	0	3080295..3081146	-	283	118478532	-	BALH_2908	-	hypothetical protein
2755	 36.76	0	3081469..3082110	-	213	118478533	-	BALH_2909	-	F0F1 ATP synthase subunit alpha
2756	 44.05	+2	3082562..3083158	+	198	118478534	-	BALH_2910	-	hypothetical protein
2757	 37.40	0	3083797..3084828	+	343	118478535	-	BALH_2911	-	microcin C7 self-immunity protein
2758	 36.49	0	3085112..3085555	-	147	118478536	-	BALH_2912	-	hypothetical protein
2759	 34.44	0	3086149..3087600	-	483	118478537	gloB	BALH_2913	-	hydroxyacylglutathione hydrolase
2760	 34.58	0	3087652..3088851	-	399	118478538	-	BALH_2914	-	sulfide-quinone reductase
2761	 34.20	0	3089583..3091313	-	576	118478539	npr	BALH_2915	-	neutral protease
2762	 36.38	0	3091696..3092679	-	327	118478540	glpQ	BALH_2916	-	glycerophosphoryl diester phosphodiesterase
2763	 28.33	-2	3092973..3093611	-	212	118478541	vanZ	BALH_2917	-	teicoplanin resistance protein
2764	 27.60	-2	3093895..3094086	-	63	118478542	vanY	BALH_2918	-	D-alanyl-D-alanine carboxypeptidase, N-terminal region
2765	 38.44	0	3094509..3095663	-	384	118478543	vanS	BALH_2919	-	vancomycin sensor histidine kinase
2766	 39.01	0	3095653..3096357	-	234	118478544	vanR	BALH_2920	-	vancomycin response regulator
2767	 32.88	0	3097019..3099022	-	667	118478545	-	BALH_2921	-	penicillin-binding protein
2768	 30.26	-1	3099837..3101039	-	400	118478546	-	BALH_2922	-	membrane protein
2769	 32.67	0	3101114..3102163	-	349	118478547	-	BALH_2923	-	Gfo/Idh/MocA family oxidoreductase
2770	 30.43	-1	3102181..3103041	-	286	118478548	-	BALH_2924	-	HAD family phosphatase
2771	 29.56	-1	3103028..3104353	-	441	118478549	-	BALH_2925	-	aminotransferase
2772	 28.99	-1	3104452..3105441	+	329	118478550	-	BALH_2926	-	LacI family transcription regulator
2773	 33.42	0	3105671..3106801	+	376	118478551	-	BALH_2927	-	TPR domain-containing protein
2774	 34.69	0	3109050..3109637	-	195	118478552	-	BALH_2928	-	peroxidase
2775	 34.18	0	3110461..3111753	+	430	118478553	-	BALH_2929	-	DNA-damage repair protein
2776	 33.33	0	3112108..3112509	+	133	118478554	-	BALH_2930	-	hypothetical protein
2777	 33.54	0	3112605..3114587	-	660	118478555	mcpB	BALH_2931	-	methyl-accepting chemotaxis protein
2778	 35.61	0	3115931..3117250	-	439	118478556	sdaC	BALH_2932	-	serine transporter
2779	 39.17	+1	3117543..3118433	-	296	118478557	sdhA	BALH_2933	-	L-serine ammonia-lyase
2780	 33.62	0	3118456..3119154	-	232	118478558	sdhB	BALH_2934	-	L-serine ammonia-lyase
2781	 32.68	0	3119991..3120599	-	202	118478559	fic	BALH_2935	-	cell filamentation protein
2782	 32.70	0	3120701..3121966	-	421	118478560	ectB	BALH_2936	-	diaminobutyrate--2-oxoglutarate aminotransferase
2783	 32.16	-1	3122046..3124427	-	793	118478561	hypF	BALH_2937	-	hydrogenase maturation protein
2784	 33.62	0	3124387..3125415	-	342	118478562	hypE	BALH_2938	-	hydrogenase expression/formation protein
2785	 33.51	0	3125498..3126079	-	193	118478563	dhbB	BALH_2939	-	isochorismatase
2786	 34.92	0	3126283..3126723	-	146	118478564	-	BALH_2940	-	AsnC family transcriptional regulator
2787	 33.94	0	3126853..3128169	+	438	118478565	-	BALH_2942	-	amino acid permease
2788	 32.94	0	3129058..3129567	-	169	118478566	-	BALH_2943	-	hypothetical protein
2789	 38.46	0	3129700..3130968	-	422	118478567	-	BALH_2944	-	hypothetical protein
2790	 38.36	0	3130961..3132133	-	390	118478568	serA	BALH_2945	-	D-3-phosphoglycerate dehydrogenase
2791	 36.10	0	3132146..3133228	-	360	162382780	-	BALH_2946	-	phosphoserine aminotransferase
2792	 33.25	0	3133717..3134889	-	390	118478570	-	BALH_2947	-	hypothetical protein
2793	 38.49	0	3134966..3135217	-	83	118478571	-	BALH_2948	-	hypothetical protein
2794	 37.56	0	3135499..3136326	-	275	118478572	-	BALH_2949	-	AraC family transcriptional regulator
2795	 33.61	0	3136641..3137000	+	119	118478573	-	BALH_2950	-	hypothetical protein
2796	 30.02	-1	3137039..3137491	-	150	118478574	-	BALH_2951	-	hypothetical protein
2797	 36.77	0	3137504..3138580	-	358	118478575	-	BALH_2952	-	hypothetical protein
2798	 38.31	0	3138725..3141115	-	796	118478576	-	BALH_2953	-	penicillin acylase II
2799	 36.04	0	3141202..3141903	-	233	118478577	-	BALH_2954	-	phage replication protein
2800	 38.34	0	3142193..3143968	-	591	118478578	-	BALH_2955	-	N-acetylmuramoyl-L-alanine amidase and S-layer protein fusion
2801	 36.36	0	3144341..3144802	-	153	118478579	-	BALH_2956	-	hypothetical protein
2802	 38.42	0	3145102..3145809	+	235	118478580	-	BALH_2957	-	hypothetical protein
2803	 31.53	-1	3145888..3146220	-	110	118478581	-	BALH_2958	-	hypothetical protein
2804	 35.59	0	3146600..3147706	+	368	118478582	-	BALH_2959	-	S-layer domain-containing protein
2805	 33.92	0	3147838..3148347	-	169	118478583	-	BALH_2960	-	glyoxalase family protein
2806	 31.62	-1	3148554..3148961	+	135	118478584	-	BALH_2961	-	hypothetical protein
2807	 39.30	+1	3149052..3149252	-	66	118478585	-	BALH_2962	-	hypothetical protein
2808	 38.31	0	3149236..3150522	-	428	118478586	-	BALH_2963	-	multidrug-efflux protein
2809	 36.49	0	3150573..3151490	-	305	118478587	pcaD	BALH_2964	-	3-oxoadipate enol-lactonase
2810	 36.78	0	3151647..3152081	+	144	118478588	-	BALH_2965	-	MarR family transcriptional regulator
2811	 35.32	0	3152091..3153296	+	401	118478589	norA	BALH_2966	-	quinolone resistence protein
2812	 36.83	0	3153397..3154656	+	419	118478590	-	BALH_2967	-	6-aminohexanoate-dimer hydrolase
2813	 35.36	0	3155078..3155866	-	262	118478591	-	BALH_2968	-	hypothetical protein
2814	 34.11	0	3155863..3156768	-	301	118478592	-	BALH_2969	-	ABC transporter, ATP-binding protein
2815	 32.23	-1	3157128..3157673	+	181	118478593	-	BALH_2970	-	hypothetical protein
2816	 30.27	-1	3158330..3158623	-	97	118478594	-	BALH_2971	-	SMR family multidrug efflux pump
2817	 31.52	-1	3158638..3159243	-	201	118478595	-	BALH_2972	-	TetR family transcriptional regulator
2818	 32.27	-1	3159579..3160331	-	250	118478596	-	BALH_2973	-	hypothetical protein
2819	 33.79	0	3160580..3162118	-	512	118478597	-	BALH_2974	-	perfringolysin O, thiol-activated cytolysin
2820	 39.20	+1	3162525..3163871	+	448	118478598	-	BALH_2975	-	short-chain fatty acids transporter
2821	 37.33	0	3164262..3164837	-	191	118478599	-	BALH_2976	-	NAD(P)H dehydrogenase (quinone)
2822	 33.79	0	3164861..3165298	-	145	118478600	-	BALH_2977	-	hypothetical protein
2823	 38.54	0	3166084..3166275	+	63	118478601	-	BALH_2978	-	hypothetical protein
2824	 29.74	-1	3166308..3167030	-	240	118478602	-	BALH_2979	-	hypothetical protein
2825	 37.07	0	3167214..3167936	-	240	118478603	-	BALH_2981	-	hypothetical protein
2826	 36.16	0	3167888..3169549	-	553	118478604	cbiO	BALH_2982	-	cobalt ABC transporter, ATP-binding protein
2827	 34.24	0	3169522..3170400	-	292	118478605	-	BALH_2983	-	cobalt ABC transporter, permease
2828	 39.33	+1	3170423..3171256	-	277	118478606	-	BALH_2984	-	hypothetical protein
2829	 37.81	0	3171301..3173154	-	617	118478607	-	BALH_2985	-	cell wall anchor domain-containing protein
2830	 38.33	0	3173463..3173942	-	159	118478608	-	BALH_2986	-	ribonuclease activity regulator protein RraA
2831	 38.57	0	3174143..3175573	+	476	118478609	-	BALH_2987	-	transporter
2832	 36.59	0	3175720..3176547	-	275	118478610	-	BALH_2988	-	extracellular ribonuclease
2833	 35.35	0	3177072..3178061	-	329	118478611	mtn	BALH_2989	-	putative 5-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase
2834	 34.37	0	3178514..3178900	-	128	118478612	-	BALH_2991	-	putative transposase
2835	 38.53	0	3180001..3181020	-	339	118478613	-	BALH_2992	-	hypothetical protein
2836	 33.60	0	3181030..3182154	-	374	118478614	-	BALH_2993	-	transcriptional regulator
2837	 33.96	0	3182773..3184380	+	535	118478615	znuA	BALH_2994	-	high-affinity zinc uptake system periplasmic-binding protein
2838	 34.32	0	3185041..3186456	-	471	118478616	-	BALH_2995	-	GntR family transcriptional regulator
2839	 35.31	0	3186574..3187533	+	319	118478617	putA	BALH_2996	-	L-proline dehydrogenase
2840	 38.36	0	3188817..3189293	-	158	118478618	-	BALH_2997	-	transcriptional regulator
2841	 38.47	0	3189492..3191654	-	720	118478619	adp	BALH_2998	-	alkaline D-peptidase
2842	 35.56	0	3191923..3193716	+	597	118478620	-	BALH_2999	-	DNA-binding response regulator
2843	 37.68	0	3193941..3195275	+	444	118478621	-	BALH_3000	-	histidyl-tRNA synthetase
2844	 33.33	0	3195447..3195758	+	103	118478622	-	BALH_3001	-	hypothetical protein
2845	 37.00	0	3196024..3196623	+	199	118478623	-	BALH_3002	-	hypothetical protein
2846	 31.47	-1	3197125..3197874	+	249	118478624	-	BALH_3003	-	nitroreductase family protein
2847	 37.37	0	3198007..3198303	+	98	118478625	-	BALH_3004	-	hypothetical protein
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.