IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2653	 33.76	0	2958026..2959198	-	390	118478431	gerIC	BALH_2799	-	GerC family spore germination protein
2654	 32.52	0	2959108..2960214	-	368	118478432	gerIB	BALH_2800	-	GerB family spore germination protein
2655	 33.33	0	2960211..2961710	-	499	118478433	gerIA	BALH_2801	-	GerA family spore germination protein
2656	 32.76	0	2962079..2964346	-	755	118478434	kinA	BALH_2802	-	PAS/PAC sensor signal transduction histidine kinase
2657	 32.91	0	2965152..2966585	-	477	118478435	-	BALH_2803	-	hemolysin BL binding component (hemolytic enterotoxin HBL)
2658	 33.95	0	2966929..2968071	-	380	118478436	-	BALH_2804	-	hemolysin BL binding component B (hemolytic enterotoxin HBL)
2659	 36.36	0	2968093..2969313	-	406	118478437	-	BALH_2806	-	hemolysin BL lytic component L1 (hemolytic enterotoxin HBL)
2660	 32.36	0	2969375..2970703	-	442	118478438	-	BALH_2807	-	hemolysin BL lytic component L2 (hemolytic enterotoxin HBL)
2661	 29.67	-1	2971873..2973102	-	409	118478439	trrA	BALH_2808	-	AraC family transcriptional regulator
2662	 33.86	0	2973370..2973558	+	62	118478440	-	BALH_2809	-	hypothetical protein
2663	 26.32	-2	2974844..2975485	-	213	118478441	uvrC	BALH_2810	-	UvrC-like protein
2664	 36.16	0	2975652..2977067	-	471	118478442	-	BALH_2812	-	amino acid permease
2665	 34.07	0	2977201..2978019	-	272	118478443	proC	BALH_2813	-	pyrroline-5-carboxylate reductase
2666	 31.22	-1	2979044..2979988	-	314	118478444	-	BALH_2814	-	response regulator
2667	 31.28	-1	2979993..2981309	-	438	118478445	-	BALH_2816	-	two-component sensor histidine kinase
2668	 37.00	0	2981542..2982522	-	326	118478446	-	BALH_2817	-	glutaminase
2669	 35.20	0	2982647..2984089	-	480	118478447	-	BALH_2819	-	glutamine permease
2670	 30.41	-1	2984963..2986192	+	409	118478448	-	BALH_2820	-	transporter
2671	 27.52	-2	2986454..2987227	-	257	118478449	-	BALH_2821	-	hypothetical protein
2672	 35.42	0	2987355..2987882	+	175	118478450	-	BALH_2822	-	hypothetical protein
2673	 30.88	-1	2987906..2988679	+	257	118478451	-	BALH_2823	-	hypothetical protein
2674	 35.91	0	2989310..2990899	-	529	118478452	ushA	BALH_2824	-	5'-nucleotidase
2675	 38.97	0	2991348..2991560	+	70	118478453	-	BALH_2825	-	hypothetical protein
2676	 39.34	+1	2992305..2992637	+	110	118478454	-	BALH_2826	-	hypothetical protein
2677	 31.65	-1	2992885..2993835	-	316	118478455	-	BALH_2827	-	magnesium and cobalt transport protein
2678	 35.28	0	2994141..2995166	-	341	118478456	-	BALH_2828	-	hypothetical protein
2679	 31.63	-1	2995202..2995612	-	136	118478457	-	BALH_2829	-	hypothetical protein
2680	 36.18	0	2995678..2996064	-	128	118478458	-	BALH_2830	-	general stress protein 17M
2681	 34.41	0	2996498..2996869	+	123	118478459	-	BALH_2831	-	hypothetical protein
2682	 33.90	0	2996908..2997618	-	236	118478460	-	BALH_2832	-	hypothetical protein
2683	 34.94	0	2998290..2999720	-	476	118478461	-	BALH_2833	-	deoxyribodipyrimidine photo-lyase type I
2684	 31.61	-1	2999885..3000406	-	173	118478462	-	BALH_2834	-	carbonic anhydrase
2685	 38.62	0	3000477..3003104	-	875	118478463	-	BALH_2835	-	hypothetical protein
2686	 36.45	0	3003101..3004639	-	512	118478464	ndhF	BALH_2836	-	NADH dehydrogenase subunit 5
2687	 35.26	0	3005255..3005617	-	120	118478465	-	BALH_2837	-	hypothetical protein
2688	 33.16	0	3006167..3006739	-	190	118478466	-	BALH_2838	-	hypothetical protein
2689	 35.06	0	3006752..3007849	-	365	118478467	-	BALH_2839	-	hypothetical protein
2690	 36.88	0	3007846..3008775	-	309	118478468	-	BALH_2840	-	MoxR-like ATPase
2691	 37.83	0	3009162..3010073	-	303	118478469	menA	BALH_2841	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
2692	 35.03	0	3010269..3011153	-	294	118478470	-	BALH_2842	-	alpha/beta fold family hydrolase
2693	 32.02	-1	3011360..3012199	-	279	118478471	-	BALH_2843	-	spore maturation protein
2694	 32.01	-1	3012648..3013403	+	251	118478472	-	BALH_2844	-	ABC transporter, ATP-binding protein
2695	 29.17	-1	3013427..3015397	+	656	118478473	salY	BALH_2845	-	ABC transporter, permease component associated with salivaricin lantibiotic
2696	 27.23	-2	3015477..3017066	+	529	118478474	-	BALH_2846	-	two-component sensor histidine kinase
2697	 29.27	-1	3017035..3017649	+	204	118478475	-	BALH_2847	-	salavaricin two-component response regulator
2698	 33.65	0	3017738..3018673	-	311	118478476	mntA	BALH_2848	-	manganese ABC transporter, manganese-binding protein
2699	 36.68	0	3018691..3019557	-	288	118478477	mntD	BALH_2849	-	manganese ABC transporter, permease
2700	 36.13	0	3019554..3020303	-	249	118478478	mntB	BALH_2850	-	manganese ABC transporter, ATP-binding protein
2701	 40.17	+1	3020677..3021276	-	199	118478479	thiJ	BALH_2851	-	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme
2702	 32.32	0	3021332..3022315	-	327	118478480	-	BALH_2852	-	hypothetical protein
2703	 32.42	0	3022637..3023293	-	218	118478481	-	BALH_2853	-	uridine kinase
2704	 37.65	0	3023607..3024023	-	138	118478482	arsC	BALH_2854	-	arsenate reductase
2705	 35.99	0	3024038..3025090	-	350	118478483	-	BALH_2855	-	arsenical-resistance protein
2706	 35.62	0	3025097..3025534	-	145	118478484	-	BALH_2856	-	lactoylglutathione lyase, glyoxalase family protein
2707	 32.01	-1	3026348..3027025	-	225	118478485	-	BALH_2857	-	hypothetical protein
2708	 35.03	0	3027038..3028333	-	431	118478486	-	BALH_2858	-	TPR repeat-containing protein
2709	 36.10	0	3028318..3030018	-	566	118478487	hscC	BALH_2859	-	heat shock protein DnaK
2710	 33.73	0	3030410..3031660	-	416	118478488	-	BALH_2861	-	major facilitator family transporter
2711	 42.29	+1	3031985..3033190	-	401	118478489	-	BALH_2862	-	N-acyl-L-amino acid amidohydrolase, C-terminal
2712	 38.10	0	3033456..3035765	-	769	118478490	-	BALH_2863	-	DNA helicase
2713	 38.68	0	3035877..3036269	+	130	118478491	gloA	BALH_2864	-	methylmalonyl-CoA epimerase
2714	 30.11	-1	3036311..3036496	+	61	118478492	-	BALH_2865	-	hypothetical protein
2715	 34.14	0	3036358..3036729	-	123	118478493	-	BALH_2866	-	hypothetical protein
2716	 32.05	-1	3037288..3037599	-	103	118478494	-	BALH_2867	-	hypothetical protein
2717	 39.51	+1	3037966..3041187	-	1073	118478495	-	BALH_2868	-	NADPH-cytochrome P450 reductase
2718	 37.61	0	3041754..3043295	-	513	118478496	-	BALH_2869	-	multidrug resistance protein B
2719	 43.12	+2	3043658..3044260	+	200	118478497	-	BALH_2870	-	hypothetical protein
2720	 37.04	0	3044501..3045040	-	179	118478498	-	BALH_2871	-	hypothetical protein
2721	 28.48	-2	3045386..3045715	-	109	118478499	-	BALH_2872	-	hypothetical protein
2722	 34.39	0	3045730..3046200	-	156	118478500	-	BALH_2873	-	hypothetical protein
2723	 35.58	0	3046340..3047050	+	236	118478501	-	BALH_2874	-	two-component response regulator
2724	 35.08	0	3047047..3048420	+	457	118478502	-	BALH_2875	-	sensor histidine kinase
2725	 36.65	0	3049243..3050691	-	482	118478503	-	BALH_2876	-	hypothetical protein
2726	 31.53	-1	3051624..3052067	-	147	118478504	-	BALH_2877	-	hypothetical protein
2727	 39.36	+1	3052604..3053599	-	331	118478505	-	BALH_2878	-	D-cysteine desulfhydrase
2728	 37.56	0	3053965..3055266	-	433	118478506	-	BALH_2879	-	phosphohydrolase
2729	 35.34	0	3055394..3056935	-	513	118478507	-	BALH_2880	-	beta-lactamase
2730	 33.16	0	3057384..3058529	-	381	118478508	-	BALH_2881	-	hypothetical protein
2731	 34.93	0	3058526..3059962	-	478	118478509	-	BALH_2882	-	coenzyme F390 synthetase
2732	 35.42	0	3059856..3060719	-	287	118478510	-	BALH_2883	-	hypothetical protein
2733	 36.47	0	3060704..3061690	-	328	118478511	-	BALH_2884	-	3-beta hydroxysteroid dehydrogenase/isomerase family protein
2734	 33.76	0	3061687..3062850	-	387	118478512	-	BALH_2885	-	hypothetical protein
2735	 37.37	0	3062840..3063829	-	329	118478513	-	BALH_2886	-	3-oxoacyl-(acyl carrier protein) synthase III
2736	 30.42	-1	3064291..3064530	-	79	118478514	-	BALH_2887	-	hypothetical protein
2737	 28.02	-2	3064610..3065023	-	137	118478515	-	BALH_2888	-	hypothetical protein
2738	 35.38	0	3065094..3066218	-	374	118478516	-	BALH_2889	-	aminopeptidase
2739	 29.89	-1	3066556..3067398	-	280	118478517	-	BALH_2890	-	CAAX amino terminal protease family protein (Ste24 endopeptidase)
2740	 30.27	-1	3067490..3068305	-	271	118478518	-	BALH_2891	-	MerR family transcriptional regulator
2741	 36.10	0	3068430..3069368	-	312	118478519	-	BALH_2892	-	hypothetical protein
2742	 35.86	0	3069553..3070146	+	197	118478520	-	BALH_2893	-	hypothetical protein
2743	 32.46	0	3070267..3071415	+	382	118478521	-	BALH_2894	-	cell wall anchor domain-containing protein
2744	 37.20	0	3071480..3072151	-	223	118478522	-	BALH_2895	-	ABC transporter, ATP-binding protein
2745	 35.25	0	3072151..3073248	-	365	118478523	-	BALH_2896	-	ABC transporter, permease
2746	 34.33	0	3073322..3074023	+	233	118478524	-	BALH_2897	-	ArsR family transcriptional regulator
2747	 38.33	0	3074093..3075352	+	419	118478525	-	BALH_2900	-	macrolide-efflux protein
2748	 36.02	0	3075539..3076915	-	458	118478526	-	BALH_2901	-	sensor histidine kinase
2749	 36.73	0	3076917..3077594	-	225	118478527	-	BALH_2902	-	two-component response regulator
2750	 30.26	-1	3077675..3078358	-	227	118478528	-	BALH_2904	-	hypothetical protein
2751	 30.91	-1	3078455..3078907	+	150	118478529	-	BALH_2905	-	MarR family transcriptional regulator
2752	 30.64	-1	3078933..3079451	+	172	118478530	paiA	BALH_2906	-	spermine/spermidine N-acetyltransferase
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.