IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2623	 31.36	-1	2927513..2928679	-	388	118478401	-	BALH_2766	-	stage II sporulation protein P
2624	 34.33	0	2928847..2929551	-	234	118478402	-	BALH_2767	-	ArsR family transcriptional regulator
2625	 33.97	0	2929621..2930091	+	156	118478403	-	BALH_2768	-	hypothetical protein
2626	 40.15	+1	2930308..2931495	-	395	118478404	acdA	BALH_2769	-	acyl-CoA dehydrogenase, short-chain specific
2627	 32.89	0	2931609..2932286	-	225	118478405	-	BALH_2770	-	hypothetical protein
2628	 36.39	0	2932572..2933159	-	195	118478406	-	BALH_2771	-	acetyltransferase
2629	 36.79	0	2933834..2935162	-	442	118478407	-	BALH_2773	-	hypothetical protein
2630	 39.14	+1	2935276..2936154	-	292	118478408	-	BALH_2774	-	phosphotransferase family protein
2631	 35.66	0	2936158..2936673	-	171	118478409	-	BALH_2775	-	acetyltransferase
2632	 34.83	0	2936700..2937167	-	155	118478410	-	BALH_2776	-	hypothetical protein
2633	 37.09	0	2937318..2938541	-	407	118478411	-	BALH_2777	-	hypothetical protein
2634	 35.19	0	2938641..2939288	+	215	118478412	-	BALH_2778	-	TetR family transcriptional regulator
2635	 38.25	0	2939344..2940969	-	541	118478413	ppsA	BALH_2779	-	phosphoenolpyruvate synthase
2636	 39.35	+1	2941054..2942001	-	315	118478414	-	BALH_2780	-	phosphoenolpyruvate synthase
2637	 38.93	0	2942442..2943299	+	285	118478415	-	BALH_2781	-	metallo-beta-lactamase family protein
2638	 36.09	0	2943575..2944408	-	277	118478416	-	BALH_2782	-	hypothetical protein
2639	 33.33	0	2944398..2944904	-	168	118478417	-	BALH_2783	-	hypothetical protein
2640	 34.79	0	2945247..2945726	-	159	118478418	-	BALH_2784	-	spore coat protein F
2641	 35.31	0	2946244..2947002	+	252	118478419	-	BALH_2785	-	hypothetical protein
2642	 30.46	-1	2947094..2947720	+	208	118478420	-	BALH_2786	-	hypothetical protein
2643	 33.41	0	2947773..2949116	-	447	118478421	-	BALH_2789	-	amino acid permease
2644	 41.55	+1	2949479..2949697	-	72	118478422	sasP	BALH_2790	-	small acid-soluble spore protein
2645	 30.65	-1	2949921..2950442	+	173	118478423	-	BALH_2791	-	hypothetical protein
2646	 35.87	0	2950478..2951107	-	209	118478424	-	BALH_2792	-	hypothetical protein
2647	 40.38	+1	2951287..2951499	-	70	118478425	sasP	BALH_2793	-	small, acid-soluble spore protein
2648	 36.16	0	2951747..2952880	+	377	118478426	-	BALH_2794	-	alcohol dehydrogenase, glutathione-dependent formaldehyde dehydrogenase
2649	 35.48	0	2953032..2953916	+	294	118478427	-	BALH_2795	-	Mn-containing catalase
2650	 39.83	+1	2954152..2955582	-	476	118478428	aspA	BALH_2796	-	aspartate ammonia-lyase
2651	 35.78	0	2955636..2956655	-	339	118478429	-	BALH_2797	-	asparaginase
2652	 33.59	0	2956815..2957201	+	128	118478430	-	BALH_2798	-	ans operon repressor protein
2653	 33.76	0	2958026..2959198	-	390	118478431	gerIC	BALH_2799	-	GerC family spore germination protein
2654	 32.52	0	2959108..2960214	-	368	118478432	gerIB	BALH_2800	-	GerB family spore germination protein
2655	 33.33	0	2960211..2961710	-	499	118478433	gerIA	BALH_2801	-	GerA family spore germination protein
2656	 32.76	0	2962079..2964346	-	755	118478434	kinA	BALH_2802	-	PAS/PAC sensor signal transduction histidine kinase
2657	 32.91	0	2965152..2966585	-	477	118478435	-	BALH_2803	-	hemolysin BL binding component (hemolytic enterotoxin HBL)
2658	 33.95	0	2966929..2968071	-	380	118478436	-	BALH_2804	-	hemolysin BL binding component B (hemolytic enterotoxin HBL)
2659	 36.36	0	2968093..2969313	-	406	118478437	-	BALH_2806	-	hemolysin BL lytic component L1 (hemolytic enterotoxin HBL)
2660	 32.36	0	2969375..2970703	-	442	118478438	-	BALH_2807	-	hemolysin BL lytic component L2 (hemolytic enterotoxin HBL)
2661	 29.67	-1	2971873..2973102	-	409	118478439	trrA	BALH_2808	-	AraC family transcriptional regulator
2662	 33.86	0	2973370..2973558	+	62	118478440	-	BALH_2809	-	hypothetical protein
2663	 26.32	-2	2974844..2975485	-	213	118478441	uvrC	BALH_2810	-	UvrC-like protein
2664	 36.16	0	2975652..2977067	-	471	118478442	-	BALH_2812	-	amino acid permease
2665	 34.07	0	2977201..2978019	-	272	118478443	proC	BALH_2813	-	pyrroline-5-carboxylate reductase
2666	 31.22	-1	2979044..2979988	-	314	118478444	-	BALH_2814	-	response regulator
2667	 31.28	-1	2979993..2981309	-	438	118478445	-	BALH_2816	-	two-component sensor histidine kinase
2668	 37.00	0	2981542..2982522	-	326	118478446	-	BALH_2817	-	glutaminase
2669	 35.20	0	2982647..2984089	-	480	118478447	-	BALH_2819	-	glutamine permease
2670	 30.41	-1	2984963..2986192	+	409	118478448	-	BALH_2820	-	transporter
2671	 27.52	-2	2986454..2987227	-	257	118478449	-	BALH_2821	-	hypothetical protein
2672	 35.42	0	2987355..2987882	+	175	118478450	-	BALH_2822	-	hypothetical protein
2673	 30.88	-1	2987906..2988679	+	257	118478451	-	BALH_2823	-	hypothetical protein
2674	 35.91	0	2989310..2990899	-	529	118478452	ushA	BALH_2824	-	5'-nucleotidase
2675	 38.97	0	2991348..2991560	+	70	118478453	-	BALH_2825	-	hypothetical protein
2676	 39.34	+1	2992305..2992637	+	110	118478454	-	BALH_2826	-	hypothetical protein
2677	 31.65	-1	2992885..2993835	-	316	118478455	-	BALH_2827	-	magnesium and cobalt transport protein
2678	 35.28	0	2994141..2995166	-	341	118478456	-	BALH_2828	-	hypothetical protein
2679	 31.63	-1	2995202..2995612	-	136	118478457	-	BALH_2829	-	hypothetical protein
2680	 36.18	0	2995678..2996064	-	128	118478458	-	BALH_2830	-	general stress protein 17M
2681	 34.41	0	2996498..2996869	+	123	118478459	-	BALH_2831	-	hypothetical protein
2682	 33.90	0	2996908..2997618	-	236	118478460	-	BALH_2832	-	hypothetical protein
2683	 34.94	0	2998290..2999720	-	476	118478461	-	BALH_2833	-	deoxyribodipyrimidine photo-lyase type I
2684	 31.61	-1	2999885..3000406	-	173	118478462	-	BALH_2834	-	carbonic anhydrase
2685	 38.62	0	3000477..3003104	-	875	118478463	-	BALH_2835	-	hypothetical protein
2686	 36.45	0	3003101..3004639	-	512	118478464	ndhF	BALH_2836	-	NADH dehydrogenase subunit 5
2687	 35.26	0	3005255..3005617	-	120	118478465	-	BALH_2837	-	hypothetical protein
2688	 33.16	0	3006167..3006739	-	190	118478466	-	BALH_2838	-	hypothetical protein
2689	 35.06	0	3006752..3007849	-	365	118478467	-	BALH_2839	-	hypothetical protein
2690	 36.88	0	3007846..3008775	-	309	118478468	-	BALH_2840	-	MoxR-like ATPase
2691	 37.83	0	3009162..3010073	-	303	118478469	menA	BALH_2841	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
2692	 35.03	0	3010269..3011153	-	294	118478470	-	BALH_2842	-	alpha/beta fold family hydrolase
2693	 32.02	-1	3011360..3012199	-	279	118478471	-	BALH_2843	-	spore maturation protein
2694	 32.01	-1	3012648..3013403	+	251	118478472	-	BALH_2844	-	ABC transporter, ATP-binding protein
2695	 29.17	-1	3013427..3015397	+	656	118478473	salY	BALH_2845	-	ABC transporter, permease component associated with salivaricin lantibiotic
2696	 27.23	-2	3015477..3017066	+	529	118478474	-	BALH_2846	-	two-component sensor histidine kinase
2697	 29.27	-1	3017035..3017649	+	204	118478475	-	BALH_2847	-	salavaricin two-component response regulator
2698	 33.65	0	3017738..3018673	-	311	118478476	mntA	BALH_2848	-	manganese ABC transporter, manganese-binding protein
2699	 36.68	0	3018691..3019557	-	288	118478477	mntD	BALH_2849	-	manganese ABC transporter, permease
2700	 36.13	0	3019554..3020303	-	249	118478478	mntB	BALH_2850	-	manganese ABC transporter, ATP-binding protein
2701	 40.17	+1	3020677..3021276	-	199	118478479	thiJ	BALH_2851	-	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme
2702	 32.32	0	3021332..3022315	-	327	118478480	-	BALH_2852	-	hypothetical protein
2703	 32.42	0	3022637..3023293	-	218	118478481	-	BALH_2853	-	uridine kinase
2704	 37.65	0	3023607..3024023	-	138	118478482	arsC	BALH_2854	-	arsenate reductase
2705	 35.99	0	3024038..3025090	-	350	118478483	-	BALH_2855	-	arsenical-resistance protein
2706	 35.62	0	3025097..3025534	-	145	118478484	-	BALH_2856	-	lactoylglutathione lyase, glyoxalase family protein
2707	 32.01	-1	3026348..3027025	-	225	118478485	-	BALH_2857	-	hypothetical protein
2708	 35.03	0	3027038..3028333	-	431	118478486	-	BALH_2858	-	TPR repeat-containing protein
2709	 36.10	0	3028318..3030018	-	566	118478487	hscC	BALH_2859	-	heat shock protein DnaK
2710	 33.73	0	3030410..3031660	-	416	118478488	-	BALH_2861	-	major facilitator family transporter
2711	 42.29	+1	3031985..3033190	-	401	118478489	-	BALH_2862	-	N-acyl-L-amino acid amidohydrolase, C-terminal
2712	 38.10	0	3033456..3035765	-	769	118478490	-	BALH_2863	-	DNA helicase
2713	 38.68	0	3035877..3036269	+	130	118478491	gloA	BALH_2864	-	methylmalonyl-CoA epimerase
2714	 30.11	-1	3036311..3036496	+	61	118478492	-	BALH_2865	-	hypothetical protein
2715	 34.14	0	3036358..3036729	-	123	118478493	-	BALH_2866	-	hypothetical protein
2716	 32.05	-1	3037288..3037599	-	103	118478494	-	BALH_2867	-	hypothetical protein
2717	 39.51	+1	3037966..3041187	-	1073	118478495	-	BALH_2868	-	NADPH-cytochrome P450 reductase
2718	 37.61	0	3041754..3043295	-	513	118478496	-	BALH_2869	-	multidrug resistance protein B
2719	 43.12	+2	3043658..3044260	+	200	118478497	-	BALH_2870	-	hypothetical protein
2720	 37.04	0	3044501..3045040	-	179	118478498	-	BALH_2871	-	hypothetical protein
2721	 28.48	-2	3045386..3045715	-	109	118478499	-	BALH_2872	-	hypothetical protein
2722	 34.39	0	3045730..3046200	-	156	118478500	-	BALH_2873	-	hypothetical protein
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.