IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
216	 36.53	0	245137..246513	+	458	118475994	murF	BALH_0231	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
217	 41.65	+1	246819..248405	+	528	118475995	deaD	BALH_0232	-	DEAD-box ATP dependent DNA helicase
218	 35.44	0	248421..249464	+	347	118475996	uvsE	BALH_0233	-	putative UV damage endonuclease
219	 36.82	0	249457..250029	-	190	118475997	-	BALH_0234	-	rhomboid family protein
220	 36.11	0	250122..250481	+	119	118475998	acpS	BALH_0235	-	holo-[acyl-carrier protein] synthase
221	 36.73	0	250500..251588	+	362	118475999	-	BALH_0236	-	hypothetical protein
222	 38.46	0	251707..252876	+	389	118476000	alr	BALH_0237	-	alanine racemase
223	 41.67	+1	253186..253473	+	95	118476001	-	BALH_0238	-	hypothetical protein
224	 40.17	+1	253478..253828	+	116	118476002	-	BALH_0239	-	pemK-like protein
225	 36.46	0	253890..256064	+	724	118476003	-	BALH_0240	-	transcription accessory protein
226	 35.05	0	256428..256892	+	154	118476004	-	BALH_0241	-	hypothetical protein
227	 35.40	0	263321..263803	+	160	118476005	-	BALH_0243	-	kinase
228	 35.58	0	263676..264476	+	266	118476006	gcp	BALH_0244	-	O-sialoglycoprotein endopeptidase
229	 35.98	0	264481..264933	+	150	118476007	rimI	BALH_0245	-	SSU ribosomal protein S18P alanine acetyltransferase
230	 40.02	+1	264918..265949	+	343	118476008	gcp	BALH_0246	-	O-sialoglycoprotein endopeptidase
231	 35.71	0	266370..268346	-	658	118476009	-	BALH_0247	-	ABC transporter, ATP-binding protein
232	 35.40	0	268480..269109	+	209	118476010	-	BALH_0248	-	redox-sensing transcriptional repressor Rex
233	 35.60	0	269327..270076	-	249	118476011	-	BALH_0249	-	CAAX amino protease
234	 39.30	+1	270478..270762	+	94	162382787	groES	BALH_0250	-	co-chaperonin GroES
235	 41.77	+1	270801..272435	+	544	118476013	groEL	BALH_0251	-	chaperonin GroEL
236	 35.35	0	272722..273762	+	346	118476014	-	BALH_0252	-	hypothetical protein
237	 29.61	-1	273786..274241	+	151	118476015	-	BALH_0253	-	hypothetical protein
238	 39.79	+1	274901..276448	+	515	118476016	guaA	BALH_0254	-	bifunctional GMP synthase/glutamine amidotransferase protein
239	 30.88	-1	276584..277438	+	284	118476017	-	BALH_0255	-	hypothetical protein
240	 32.26	-1	277538..278746	-	402	118476018	-	BALH_0256	-	phage integrase family site specific recombinase
241	 33.33	0	278715..278930	-	71	118476019	-	BALH_0257	-	hypothetical protein
242	 30.32	-1	279218..280048	-	276	118476020	-	BALH_0258	-	Rep protein
243	 35.65	0	280204..281541	-	445	118476021	-	BALH_0259	-	FtsK/SpoIIIE family protein
244	 36.34	0	281548..281880	-	110	118476022	-	BALH_0260	-	hypothetical protein
245	 33.52	0	282019..282540	-	173	118476023	-	BALH_0261	-	hypothetical protein
246	 29.63	-1	282647..283240	+	197	118476024	-	BALH_0262	-	hypothetical protein
247	 40.27	+1	283788..285113	+	441	118476025	-	BALH_0264	-	guanine-hypoxanthine permease, xanthine/uracil permease family protein
248	 36.32	0	285259..285960	+	233	118476026	-	BALH_0265	-	DNA-binding response regulator
249	 34.26	0	285944..287449	+	501	118476027	-	BALH_0266	-	sensor histidine kinase
250	 35.00	0	292808..293767	+	319	118476028	-	BALH_0268	-	alpha/beta hydrolase
251	 36.20	0	293933..294664	+	243	118476029	frnE	BALH_0269	-	frnE protein
252	 25.67	-2	300262..300561	+	99	118476030	galE	BALH_0271	-	UDP-glucose 4-epimerase, N-terminal region
253	 33.97	0	301339..301650	-	103	118476031	-	BALH_0272	-	glycosyl transferase, group 1 family protein
254	 36.84	0	307570..308367	-	265	118476032	bacA	BALH_0274	-	undecaprenyl pyrophosphate phosphatase
255	 34.53	0	308385..309137	-	250	118476033	bcrB	BALH_0275	-	bacitracin ABC transporter, permease component
256	 34.30	0	309115..310044	-	309	118476034	bcrA	BALH_0276	-	bacitracin ABC transporter, ATP-binding protein
257	 33.53	0	310113..311135	-	340	118476035	-	BALH_0277	-	sensor histidine kinase
258	 32.49	0	311116..311829	-	237	118476036	-	BALH_0278	-	DNA-binding response regulator
259	 33.55	0	317361..318293	+	310	118476037	-	BALH_0279	-	DMT family permease
260	 33.33	0	318376..319167	-	263	118476038	-	BALH_0280	-	hypothetical protein
261	 41.42	+1	324944..325450	+	168	118476039	purE	BALH_0282	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
262	 37.76	0	325447..326598	+	383	118476040	purK	BALH_0283	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
263	 37.87	0	326559..327902	+	447	118476041	purB	BALH_0284	-	adenylosuccinate lyase
264	 35.39	0	327934..328710	+	258	118476042	purC	BALH_0285	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
265	 35.29	0	328703..328957	+	84	118476043	purS	BALH_0286	-	phosphoribosylformylglycinamidine synthase subunit PurS
266	 38.30	0	328954..329637	+	227	118476044	purQ	BALH_0287	-	phosphoribosylformylglycinamidine synthase subunit I
267	 40.72	+1	329621..331840	+	739	118476045	purL	BALH_0288	-	phosphoribosylformylglycinamidine synthase II
268	 40.10	+1	331807..333240	+	477	118476046	purF	BALH_0289	-	amidophosphoribosyltransferase
269	 38.71	0	333347..334387	+	346	118476047	purM	BALH_0290	-	phosphoribosylaminoimidazole synthetase
270	 36.22	0	334384..334971	+	195	118476048	purN	BALH_0291	-	phosphoribosylglycinamide formyltransferase
271	 37.57	0	334996..336531	+	511	118476049	purH	BALH_0292	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
272	 38.29	0	336652..337923	+	423	118476050	purD	BALH_0293	-	phosphoribosylamine--glycine ligase
273	 36.64	0	338142..338987	-	281	118476051	-	BALH_0294	-	SPFH domain-containing protein/band 7 family protein
274	 37.79	0	339197..339667	-	156	118476052	-	BALH_0295	-	hypothetical protein
275	 36.39	0	339847..340599	+	250	118476053	-	BALH_0296	-	geranylgeranylglyceryl phosphate synthase-like protein
276	 38.59	0	340600..342861	+	753	118476054	pcrA	BALH_0297	-	ATP-dependent DNA helicase PcrA
277	 38.31	0	342877..344886	+	669	118476055	ligA	BALH_0298	-	NAD-dependent DNA ligase LigA
278	 36.18	0	344903..346096	+	397	118476056	-	BALH_0299	-	hypothetical protein
279	 32.81	0	346192..346962	+	256	118476057	-	BALH_0300	-	integral membrane protein
280	 40.44	+1	347116..348663	+	515	118476058	rocA	BALH_0301	-	1-pyrroline-5-carboxylate dehydrogenase
281	 35.86	0	349230..349823	-	197	118476059	-	BALH_0302	-	isochorismatase
282	 35.38	0	350164..351285	+	373	118476060	-	BALH_0303	-	ABC transporter, ATP-binding protein
283	 37.09	0	351275..351940	+	221	118476061	-	BALH_0304	-	ABC transporter, permease component
284	 36.49	0	351962..352816	+	284	118476062	-	BALH_0305	-	ABC transporter, substrate-binding protein
285	 33.60	0	353005..353382	+	125	118476063	-	BALH_0306	-	transposase
286	 35.09	0	353517..354257	+	246	118476064	-	BALH_0307	-	transposase
287	 34.30	0	354838..355044	-	68	118476065	-	BALH_0308	-	hypothetical protein
288	 36.55	0	355022..356203	-	393	118476066	arsA	BALH_0309	-	anion-transporting ATPase
289	 34.78	0	356281..356763	-	160	118476067	-	BALH_0310	-	MarR family transcriptional regulator
290	 32.91	0	357004..357240	+	78	118476068	-	BALH_0311	-	hypothetical protein
291	 33.68	0	357382..357672	+	96	118476069	gatC	BALH_0312	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
292	 39.37	+1	357688..359145	+	485	118476070	gatA	BALH_0313	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
293	 37.54	0	359160..360587	+	475	118476071	gatB	BALH_0314	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
294	 39.40	+1	361060..361965	+	301	118476072	-	BALH_0315	-	putative lipid kinase
295	 37.90	0	362105..362848	+	247	118476073	-	BALH_0316	-	haloacid dehalogenase-like hydrolase
296	 39.04	+1	362931..364367	+	478	118476074	gabT	BALH_0317	-	4-aminobutyrate aminotransferase
297	 35.84	0	364453..365847	+	464	118476075	-	BALH_0318	-	sensory box sigma-54 dependent DNA-binding response regulator
298	 41.60	+1	365840..367291	+	483	118476076	gadD	BALH_0319	-	succinate semialdehyde dehydrogenase
299	 37.13	0	367702..369045	-	447	118476077	ampS	BALH_0320	-	aminopeptidase II
300	 35.46	0	369048..370130	-	360	118476078	-	BALH_0321	-	polysaccharide deacetylase
301	 34.51	0	370282..371385	-	367	118476079	-	BALH_0322	-	polysaccharide deacetylase-like protein
302	 36.01	0	371660..372856	-	398	118476080	-	BALH_0323	-	NupC family nucleoside transporter
303	 40.06	+1	373261..374658	+	465	118476081	trmA	BALH_0324	-	RNA methyltransferase
304	 41.35	+1	374734..375744	+	336	118476082	-	BALH_0325	-	dihydrouridine synthase family protein
305	 35.40	0	376046..378079	+	677	118476083	-	BALH_0326	-	GAF sensor signal transduction histidine kinase
306	 36.03	0	378157..378675	+	172	118476084	-	BALH_0327	-	hypothetical protein
307	 36.72	0	378770..379477	+	235	118476085	-	BALH_0328	-	zinc metalloprotease
308	 40.52	+1	379719..380414	-	231	118476086	-	BALH_0329	-	hypothetical protein
309	 39.46	+1	380429..381538	-	369	118476087	-	BALH_0330	-	mandelate racemase/muconate lactonizing enzyme family protein
310	 34.12	0	381631..382902	+	423	118476088	-	BALH_0331	-	hypothetical protein
311	 37.13	0	382891..384312	-	473	118476089	nhaC	BALH_0332	-	Na+/H+ antiporter
312	 38.38	0	384559..385707	+	382	118476090	amhX	BALH_0333	-	amidohydrolase
313	 33.99	0	385859..386467	+	202	118476091	-	BALH_0334	-	methyltransferase
314	 40.80	+1	386514..388040	-	508	118476092	ahpF	BALH_0335	-	alkyl hydroperoxide reductase, subunit F
315	 40.43	+1	388055..388618	-	187	118476093	ahpC	BALH_0336	-	alkyl hydroperoxide reductase, subunit C
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.