IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2580	 34.40	0	2888354..2888821	-	155	118478358	-	BALH_2722	-	MutT/Nudix family protein
2581	 29.45	-1	2889505..2890122	-	205	118478359	-	BALH_2723	-	hypothetical protein
2582	 31.39	-1	2890110..2890982	-	290	118478360	-	BALH_2724	-	ABC transporter, ATP-binding protein
2583	 31.28	-1	2890970..2891359	-	129	118478361	-	BALH_2725	-	GntR family transcriptional regulator
2584	 37.52	0	2892296..2893321	-	341	118478362	-	BALH_2726	-	isoflavone reductase
2585	 34.08	0	2893509..2894174	-	221	118478363	-	BALH_2727	-	ABC transporter, ATP-binding protein
2586	 28.82	-2	2894174..2895436	-	420	118478364	-	BALH_2728	-	ABC transporter, permease
2587	 29.65	-1	2895442..2896527	-	361	118478365	-	BALH_2729	-	ABC transporter, permease
2588	 39.30	+1	2896593..2896961	-	122	118478366	-	BALH_2730	-	hypothetical protein
2589	 36.50	0	2897169..2898116	-	315	118478367	-	BALH_2731	-	beta-lactamase class C and other pencillin-binding proteins
2590	 34.23	0	2898141..2899031	-	296	118478368	-	BALH_2732	-	AraC family transcriptional regulator
2591	 28.43	-2	2899568..2899975	-	135	118478369	-	BALH_2733	-	hypothetical protein
2592	 34.58	0	2900060..2900539	+	159	118478370	-	BALH_2734	-	7,8-dihydro-8-oxoguanine-triphosphatase
2593	 37.58	0	2900558..2901523	-	321	118478371	-	BALH_2735	-	DMT family permease
2594	 38.97	0	2901565..2903037	+	490	118478372	-	BALH_2736	-	GntR family transcriptional regulator
2595	 37.33	0	2903058..2903558	+	166	118478373	-	BALH_2737	-	hypothetical protein
2596	 34.83	0	2903645..2903977	-	110	118478374	-	BALH_2738	-	hypothetical protein
2597	 36.97	0	2904039..2904863	-	274	118478375	-	BALH_2739	-	hypothetical protein
2598	 34.61	0	2904992..2905696	-	234	118478376	-	BALH_2740	-	uridine kinase
2599	 35.66	0	2905796..2906569	-	257	118478377	prpA	BALH_2741	-	serine/threonine protein phosphatase
2600	 32.49	0	2906553..2907497	-	314	118478378	-	BALH_2742	-	aminoglycoside phosphotransferase
2601	 37.72	0	2907494..2908291	-	265	118478379	-	BALH_2743	-	hypothetical protein
2602	 37.80	0	2908372..2909400	+	342	118478380	-	BALH_2745	-	hypothetical protein
2603	 37.01	0	2909421..2909882	-	153	118478381	-	BALH_2746	-	ribosomal-protein-alanine acetyltransferase
2604	 40.01	+1	2910405..2911976	+	523	118478382	lysP	BALH_2747	-	lysine specific permease
2605	 33.83	0	2911997..2912395	+	132	118478383	-	BALH_2748	-	hypothetical protein
2606	 32.56	0	2912429..2913199	+	256	118478384	-	BALH_2749	-	DNA-3-methylpurine glycosylase
2607	 33.54	0	2913263..2913754	-	163	118478385	-	BALH_2750	-	hypothetical protein
2608	 36.29	0	2914199..2914705	+	168	118478386	-	BALH_2751	-	methyltransferase
2609	 32.79	0	2914849..2915397	-	182	118478387	-	BALH_2752	-	MutT/NUDIX family phosphohydrolase
2610	 34.03	0	2915579..2916154	+	191	118478388	-	BALH_2753	-	cephalosporin hydroxylase
2611	 30.20	-1	2916188..2916730	-	180	118478389	-	BALH_2754	-	signal peptidase I
2612	 36.21	0	2916792..2918945	-	717	118478390	-	BALH_2755	-	penicillin-binding protein
2613	 34.69	0	2919414..2920151	-	245	118478391	-	BALH_2756	-	NAD-dependent deacetylase
2614	 38.27	0	2920218..2920865	-	215	118478392	-	BALH_2757	-	pyrrolidone-carboxylate peptidase
2615	 39.04	+1	2920882..2921844	-	320	118478393	-	BALH_2758	-	permease
2616	 37.87	0	2921846..2922550	-	234	118478394	-	BALH_2759	-	permease
2617	 39.36	+1	2922565..2923344	-	259	118478395	-	BALH_2760	-	hypothetical protein
2618	 39.49	+1	2923345..2924334	-	329	118478396	-	BALH_2761	-	urea amidolyase-related protein
2619	 38.66	0	2924325..2925038	-	237	118478397	-	BALH_2762	-	hypothetical protein
2620	 38.17	0	2925053..2925859	-	268	118478398	-	BALH_2763	-	IclR family transcriptional regulator
2621	 35.51	0	2925946..2926497	-	183	118478399	-	BALH_2764	-	signal peptidase I
2622	 36.14	0	2926521..2927198	-	225	118478400	-	BALH_2765	-	copper homeostasis protein
2623	 31.36	-1	2927513..2928679	-	388	118478401	-	BALH_2766	-	stage II sporulation protein P
2624	 34.33	0	2928847..2929551	-	234	118478402	-	BALH_2767	-	ArsR family transcriptional regulator
2625	 33.97	0	2929621..2930091	+	156	118478403	-	BALH_2768	-	hypothetical protein
2626	 40.15	+1	2930308..2931495	-	395	118478404	acdA	BALH_2769	-	acyl-CoA dehydrogenase, short-chain specific
2627	 32.89	0	2931609..2932286	-	225	118478405	-	BALH_2770	-	hypothetical protein
2628	 36.39	0	2932572..2933159	-	195	118478406	-	BALH_2771	-	acetyltransferase
2629	 36.79	0	2933834..2935162	-	442	118478407	-	BALH_2773	-	hypothetical protein
2630	 39.14	+1	2935276..2936154	-	292	118478408	-	BALH_2774	-	phosphotransferase family protein
2631	 35.66	0	2936158..2936673	-	171	118478409	-	BALH_2775	-	acetyltransferase
2632	 34.83	0	2936700..2937167	-	155	118478410	-	BALH_2776	-	hypothetical protein
2633	 37.09	0	2937318..2938541	-	407	118478411	-	BALH_2777	-	hypothetical protein
2634	 35.19	0	2938641..2939288	+	215	118478412	-	BALH_2778	-	TetR family transcriptional regulator
2635	 38.25	0	2939344..2940969	-	541	118478413	ppsA	BALH_2779	-	phosphoenolpyruvate synthase
2636	 39.35	+1	2941054..2942001	-	315	118478414	-	BALH_2780	-	phosphoenolpyruvate synthase
2637	 38.93	0	2942442..2943299	+	285	118478415	-	BALH_2781	-	metallo-beta-lactamase family protein
2638	 36.09	0	2943575..2944408	-	277	118478416	-	BALH_2782	-	hypothetical protein
2639	 33.33	0	2944398..2944904	-	168	118478417	-	BALH_2783	-	hypothetical protein
2640	 34.79	0	2945247..2945726	-	159	118478418	-	BALH_2784	-	spore coat protein F
2641	 35.31	0	2946244..2947002	+	252	118478419	-	BALH_2785	-	hypothetical protein
2642	 30.46	-1	2947094..2947720	+	208	118478420	-	BALH_2786	-	hypothetical protein
2643	 33.41	0	2947773..2949116	-	447	118478421	-	BALH_2789	-	amino acid permease
2644	 41.55	+1	2949479..2949697	-	72	118478422	sasP	BALH_2790	-	small acid-soluble spore protein
2645	 30.65	-1	2949921..2950442	+	173	118478423	-	BALH_2791	-	hypothetical protein
2646	 35.87	0	2950478..2951107	-	209	118478424	-	BALH_2792	-	hypothetical protein
2647	 40.38	+1	2951287..2951499	-	70	118478425	sasP	BALH_2793	-	small, acid-soluble spore protein
2648	 36.16	0	2951747..2952880	+	377	118478426	-	BALH_2794	-	alcohol dehydrogenase, glutathione-dependent formaldehyde dehydrogenase
2649	 35.48	0	2953032..2953916	+	294	118478427	-	BALH_2795	-	Mn-containing catalase
2650	 39.83	+1	2954152..2955582	-	476	118478428	aspA	BALH_2796	-	aspartate ammonia-lyase
2651	 35.78	0	2955636..2956655	-	339	118478429	-	BALH_2797	-	asparaginase
2652	 33.59	0	2956815..2957201	+	128	118478430	-	BALH_2798	-	ans operon repressor protein
2653	 33.76	0	2958026..2959198	-	390	118478431	gerIC	BALH_2799	-	GerC family spore germination protein
2654	 32.52	0	2959108..2960214	-	368	118478432	gerIB	BALH_2800	-	GerB family spore germination protein
2655	 33.33	0	2960211..2961710	-	499	118478433	gerIA	BALH_2801	-	GerA family spore germination protein
2656	 32.76	0	2962079..2964346	-	755	118478434	kinA	BALH_2802	-	PAS/PAC sensor signal transduction histidine kinase
2657	 32.91	0	2965152..2966585	-	477	118478435	-	BALH_2803	-	hemolysin BL binding component (hemolytic enterotoxin HBL)
2658	 33.95	0	2966929..2968071	-	380	118478436	-	BALH_2804	-	hemolysin BL binding component B (hemolytic enterotoxin HBL)
2659	 36.36	0	2968093..2969313	-	406	118478437	-	BALH_2806	-	hemolysin BL lytic component L1 (hemolytic enterotoxin HBL)
2660	 32.36	0	2969375..2970703	-	442	118478438	-	BALH_2807	-	hemolysin BL lytic component L2 (hemolytic enterotoxin HBL)
2661	 29.67	-1	2971873..2973102	-	409	118478439	trrA	BALH_2808	-	AraC family transcriptional regulator
2662	 33.86	0	2973370..2973558	+	62	118478440	-	BALH_2809	-	hypothetical protein
2663	 26.32	-2	2974844..2975485	-	213	118478441	uvrC	BALH_2810	-	UvrC-like protein
2664	 36.16	0	2975652..2977067	-	471	118478442	-	BALH_2812	-	amino acid permease
2665	 34.07	0	2977201..2978019	-	272	118478443	proC	BALH_2813	-	pyrroline-5-carboxylate reductase
2666	 31.22	-1	2979044..2979988	-	314	118478444	-	BALH_2814	-	response regulator
2667	 31.28	-1	2979993..2981309	-	438	118478445	-	BALH_2816	-	two-component sensor histidine kinase
2668	 37.00	0	2981542..2982522	-	326	118478446	-	BALH_2817	-	glutaminase
2669	 35.20	0	2982647..2984089	-	480	118478447	-	BALH_2819	-	glutamine permease
2670	 30.41	-1	2984963..2986192	+	409	118478448	-	BALH_2820	-	transporter
2671	 27.52	-2	2986454..2987227	-	257	118478449	-	BALH_2821	-	hypothetical protein
2672	 35.42	0	2987355..2987882	+	175	118478450	-	BALH_2822	-	hypothetical protein
2673	 30.88	-1	2987906..2988679	+	257	118478451	-	BALH_2823	-	hypothetical protein
2674	 35.91	0	2989310..2990899	-	529	118478452	ushA	BALH_2824	-	5'-nucleotidase
2675	 38.97	0	2991348..2991560	+	70	118478453	-	BALH_2825	-	hypothetical protein
2676	 39.34	+1	2992305..2992637	+	110	118478454	-	BALH_2826	-	hypothetical protein
2677	 31.65	-1	2992885..2993835	-	316	118478455	-	BALH_2827	-	magnesium and cobalt transport protein
2678	 35.28	0	2994141..2995166	-	341	118478456	-	BALH_2828	-	hypothetical protein
2679	 31.63	-1	2995202..2995612	-	136	118478457	-	BALH_2829	-	hypothetical protein
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.