IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2531	 30.10	-1	2834791..2835378	-	195	118478309	-	BALH_2672	-	hypothetical protein
2532	 37.50	0	2835478..2835813	-	111	118478310	-	BALH_2673	-	hypothetical protein
2533	 36.69	0	2835901..2837121	-	406	118478311	-	BALH_2674	-	macrolide efflux protein
2534	 35.44	0	2837173..2838216	-	347	118478312	-	BALH_2675	-	ArsR family transcriptional regulator
2535	 37.00	0	2838397..2838996	+	199	118478313	-	BALH_2676	-	hypothetical protein
2536	 33.33	0	2839200..2840393	+	397	118478314	nupC	BALH_2677	-	nucleoside transporter
2537	 37.74	0	2840443..2841759	-	438	118478315	proA	BALH_2678	-	gamma-glutamyl phosphate reductase
2538	 40.08	+1	2841722..2842966	-	414	118478316	-	BALH_2679	-	gamma-glutamyl kinase
2539	 36.26	0	2843524..2844342	+	272	118478317	proC	BALH_2680	-	pyrroline-5-carboxylate reductase
2540	 35.16	0	2844479..2846119	-	546	118478318	-	BALH_2681	-	M20 family peptidase
2541	 34.80	0	2846195..2846944	-	249	118478319	-	BALH_2682	-	IclR family transcriptional regulator
2542	 36.19	0	2847200..2848636	+	478	118478320	rocC	BALH_2683	-	amino acid permease, arginine permease
2543	 34.01	0	2848697..2849884	-	395	118478321	-	BALH_2684	-	hypothetical protein
2544	 34.98	0	2850157..2851188	-	343	118478322	-	BALH_2685	-	delta5 acyl-lipid desaturase
2545	 37.04	0	2851391..2853064	-	557	118478323	-	BALH_2686	-	alkaline phosphatase
2546	 33.54	0	2853340..2853831	+	163	118478324	-	BALH_2687	-	hypothetical protein
2547	 33.33	0	2853833..2854057	+	74	118478325	-	BALH_2688	-	Cro/CI family transcriptional regulator
2548	 29.46	-1	2854511..2854897	-	128	118478326	-	BALH_2689	-	hypothetical protein
2549	 34.36	0	2854894..2855577	-	227	118478327	-	BALH_2690	-	hypothetical protein
2550	 29.99	-1	2855667..2856983	-	438	118478328	-	BALH_2691	-	sensor histidine kinase
2551	 34.13	0	2856983..2857738	-	251	118478329	-	BALH_2692	-	response regulator
2552	 32.66	0	2857880..2858473	-	197	118478330	-	BALH_2693	-	uridine kinase
2553	 35.07	0	2858461..2859036	-	191	118478331	-	BALH_2694	-	ribosomal-protein-alanine acetyltransferase
2554	 31.51	-1	2859018..2859401	-	127	118478332	-	BALH_2695	-	lactoylglutathione lyase
2555	 31.10	-1	2860308..2860844	-	178	118478333	-	BALH_2696	-	hypothetical protein
2556	 38.29	0	2861358..2862305	+	315	118478334	-	BALH_2697	-	magnesium chelatase
2557	 34.62	0	2862302..2863465	+	387	118478335	-	BALH_2698	-	hypothetical protein
2558	 33.60	0	2863440..2864549	+	369	118478336	-	BALH_2699	-	hypothetical protein
2559	 36.27	0	2864601..2866100	-	499	118478337	-	BALH_2701	-	glycine betaine/L-proline ABC transporter, permease
2560	 25.29	-2	2866462..2866722	+	86	118478338	-	BALH_2702	-	hypothetical protein
2561	 32.80	0	2866806..2868302	+	498	118478339	-	BALH_2703	-	glycosyl transferase, group 2 family protein
2562	 34.57	0	2868444..2868686	-	80	118478340	-	BALH_2704	-	hypothetical protein
2563	 28.77	-2	2868804..2869088	+	94	118478341	-	BALH_2705	-	hypothetical protein
2564	 32.25	-1	2869301..2871691	-	796	118478342	-	BALH_2706	-	glycosyl transferase, group 2 family protein
2565	 33.08	0	2871675..2873237	-	520	118478343	-	BALH_2707	-	glycosyl transferase, group 2 family protein
2566	 28.84	-2	2873444..2874466	-	340	118478344	-	BALH_2708	-	hypothetical protein
2567	 33.33	0	2874764..2875981	-	405	118478345	argD	BALH_2709	-	aminotransferase
2568	 37.12	0	2876181..2877632	+	483	118478346	-	BALH_2710	-	catalase
2569	 31.32	-1	2877756..2878301	-	181	118478347	-	BALH_2711	-	hypothetical protein
2570	 36.41	0	2878397..2880151	-	584	118478348	-	BALH_2712	-	adenine deaminase
2571	 38.05	0	2880521..2881687	-	388	118478349	-	BALH_2713	-	alkaline D-peptidase
2572	 33.14	0	2881946..2882452	-	168	118478350	-	BALH_2714	-	hypothetical protein
2573	 30.05	-1	2882653..2883048	-	131	118478351	-	BALH_2715	-	hypothetical protein
2574	 32.58	0	2883215..2883745	-	176	118478352	-	BALH_2716	-	hypothetical protein
2575	 32.39	0	2884015..2884332	-	105	118478353	-	BALH_2717	-	hypothetical protein
2576	 37.72	0	2884347..2884985	-	212	118478354	-	BALH_2718	-	NAD(P)H nitroreductase
2577	 33.33	0	2885004..2885432	-	142	118478355	-	BALH_2719	-	MarR family transcriptional regulator
2578	 37.29	0	2885697..2887640	+	647	118478356	tetP	BALH_2720	-	tetracycline resistance protein
2579	 30.76	-1	2887688..2888347	-	219	118478357	-	BALH_2721	-	hypothetical protein
2580	 34.40	0	2888354..2888821	-	155	118478358	-	BALH_2722	-	MutT/Nudix family protein
2581	 29.45	-1	2889505..2890122	-	205	118478359	-	BALH_2723	-	hypothetical protein
2582	 31.39	-1	2890110..2890982	-	290	118478360	-	BALH_2724	-	ABC transporter, ATP-binding protein
2583	 31.28	-1	2890970..2891359	-	129	118478361	-	BALH_2725	-	GntR family transcriptional regulator
2584	 37.52	0	2892296..2893321	-	341	118478362	-	BALH_2726	-	isoflavone reductase
2585	 34.08	0	2893509..2894174	-	221	118478363	-	BALH_2727	-	ABC transporter, ATP-binding protein
2586	 28.82	-2	2894174..2895436	-	420	118478364	-	BALH_2728	-	ABC transporter, permease
2587	 29.65	-1	2895442..2896527	-	361	118478365	-	BALH_2729	-	ABC transporter, permease
2588	 39.30	+1	2896593..2896961	-	122	118478366	-	BALH_2730	-	hypothetical protein
2589	 36.50	0	2897169..2898116	-	315	118478367	-	BALH_2731	-	beta-lactamase class C and other pencillin-binding proteins
2590	 34.23	0	2898141..2899031	-	296	118478368	-	BALH_2732	-	AraC family transcriptional regulator
2591	 28.43	-2	2899568..2899975	-	135	118478369	-	BALH_2733	-	hypothetical protein
2592	 34.58	0	2900060..2900539	+	159	118478370	-	BALH_2734	-	7,8-dihydro-8-oxoguanine-triphosphatase
2593	 37.58	0	2900558..2901523	-	321	118478371	-	BALH_2735	-	DMT family permease
2594	 38.97	0	2901565..2903037	+	490	118478372	-	BALH_2736	-	GntR family transcriptional regulator
2595	 37.33	0	2903058..2903558	+	166	118478373	-	BALH_2737	-	hypothetical protein
2596	 34.83	0	2903645..2903977	-	110	118478374	-	BALH_2738	-	hypothetical protein
2597	 36.97	0	2904039..2904863	-	274	118478375	-	BALH_2739	-	hypothetical protein
2598	 34.61	0	2904992..2905696	-	234	118478376	-	BALH_2740	-	uridine kinase
2599	 35.66	0	2905796..2906569	-	257	118478377	prpA	BALH_2741	-	serine/threonine protein phosphatase
2600	 32.49	0	2906553..2907497	-	314	118478378	-	BALH_2742	-	aminoglycoside phosphotransferase
2601	 37.72	0	2907494..2908291	-	265	118478379	-	BALH_2743	-	hypothetical protein
2602	 37.80	0	2908372..2909400	+	342	118478380	-	BALH_2745	-	hypothetical protein
2603	 37.01	0	2909421..2909882	-	153	118478381	-	BALH_2746	-	ribosomal-protein-alanine acetyltransferase
2604	 40.01	+1	2910405..2911976	+	523	118478382	lysP	BALH_2747	-	lysine specific permease
2605	 33.83	0	2911997..2912395	+	132	118478383	-	BALH_2748	-	hypothetical protein
2606	 32.56	0	2912429..2913199	+	256	118478384	-	BALH_2749	-	DNA-3-methylpurine glycosylase
2607	 33.54	0	2913263..2913754	-	163	118478385	-	BALH_2750	-	hypothetical protein
2608	 36.29	0	2914199..2914705	+	168	118478386	-	BALH_2751	-	methyltransferase
2609	 32.79	0	2914849..2915397	-	182	118478387	-	BALH_2752	-	MutT/NUDIX family phosphohydrolase
2610	 34.03	0	2915579..2916154	+	191	118478388	-	BALH_2753	-	cephalosporin hydroxylase
2611	 30.20	-1	2916188..2916730	-	180	118478389	-	BALH_2754	-	signal peptidase I
2612	 36.21	0	2916792..2918945	-	717	118478390	-	BALH_2755	-	penicillin-binding protein
2613	 34.69	0	2919414..2920151	-	245	118478391	-	BALH_2756	-	NAD-dependent deacetylase
2614	 38.27	0	2920218..2920865	-	215	118478392	-	BALH_2757	-	pyrrolidone-carboxylate peptidase
2615	 39.04	+1	2920882..2921844	-	320	118478393	-	BALH_2758	-	permease
2616	 37.87	0	2921846..2922550	-	234	118478394	-	BALH_2759	-	permease
2617	 39.36	+1	2922565..2923344	-	259	118478395	-	BALH_2760	-	hypothetical protein
2618	 39.49	+1	2923345..2924334	-	329	118478396	-	BALH_2761	-	urea amidolyase-related protein
2619	 38.66	0	2924325..2925038	-	237	118478397	-	BALH_2762	-	hypothetical protein
2620	 38.17	0	2925053..2925859	-	268	118478398	-	BALH_2763	-	IclR family transcriptional regulator
2621	 35.51	0	2925946..2926497	-	183	118478399	-	BALH_2764	-	signal peptidase I
2622	 36.14	0	2926521..2927198	-	225	118478400	-	BALH_2765	-	copper homeostasis protein
2623	 31.36	-1	2927513..2928679	-	388	118478401	-	BALH_2766	-	stage II sporulation protein P
2624	 34.33	0	2928847..2929551	-	234	118478402	-	BALH_2767	-	ArsR family transcriptional regulator
2625	 33.97	0	2929621..2930091	+	156	118478403	-	BALH_2768	-	hypothetical protein
2626	 40.15	+1	2930308..2931495	-	395	118478404	acdA	BALH_2769	-	acyl-CoA dehydrogenase, short-chain specific
2627	 32.89	0	2931609..2932286	-	225	118478405	-	BALH_2770	-	hypothetical protein
2628	 36.39	0	2932572..2933159	-	195	118478406	-	BALH_2771	-	acetyltransferase
2629	 36.79	0	2933834..2935162	-	442	118478407	-	BALH_2773	-	hypothetical protein
2630	 39.14	+1	2935276..2936154	-	292	118478408	-	BALH_2774	-	phosphotransferase family protein
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.