IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2467	 29.46	-1	2761607..2762278	-	223	118478245	-	BALH_2606	-	permease
2468	 30.13	-1	2762275..2763147	-	290	118478246	-	BALH_2607	-	ABC transporter, ATP-binding protein
2469	 34.12	0	2763144..2763524	-	126	118478247	-	BALH_2608	-	GntR family transcriptional regulator
2470	 34.22	0	2765485..2766606	-	373	118478248	-	BALH_2609	-	permease
2471	 31.20	-1	2766606..2767541	+	311	118478249	-	BALH_2610	-	hypothetical protein
2472	 39.75	+1	2768007..2769128	-	373	118478250	-	BALH_2611	-	alkanesulfonate monooxygenase
2473	 34.62	0	2769195..2770052	-	285	118478251	-	BALH_2612	-	alkanesulfonates transport system permease
2474	 34.35	0	2770060..2771046	-	328	118478252	-	BALH_2613	-	alkanesulfonates-binding protein
2475	 34.26	0	2771064..2771927	-	287	118478253	ssuB	BALH_2614	-	alkanesulfonates ABC transporter, ATP-binding protein
2476	 33.53	0	2772206..2772715	-	169	118478254	-	BALH_2615	-	hypothetical protein
2477	 37.98	0	2772819..2773313	-	164	118478255	-	BALH_2616	-	MutT/NUDIX family protein
2478	 30.29	-1	2773306..2774355	-	349	118478256	-	BALH_2617	-	hypothetical protein
2479	 35.61	0	2774368..2774850	-	160	118478257	-	BALH_2618	-	TPR repeat-containing protein
2480	 35.62	0	2774965..2775663	-	232	118478258	-	BALH_2619	-	hypothetical protein
2481	 37.44	0	2775670..2776473	-	267	118478259	-	BALH_2620	-	aminoglycoside N3'-acetyltransferase
2482	 29.78	-1	2776643..2777092	+	149	118478260	-	BALH_2621	-	hypothetical protein
2483	 34.62	0	2777145..2778392	-	415	118478261	-	BALH_2622	-	glutathionylspermidine synthase
2484	 35.62	0	2778413..2779024	-	203	118478262	-	BALH_2623	-	hypothetical protein
2485	 33.33	0	2779124..2779531	-	135	118478263	-	BALH_2624	-	acetyltransferase
2486	 38.13	0	2779588..2780526	-	312	118478264	-	BALH_2625	-	hypothetical protein
2487	 34.48	0	2780596..2781117	-	173	118478265	-	BALH_2626	-	hypothetical protein
2488	 34.73	0	2781133..2781633	-	166	118478266	-	BALH_2627	-	acetyltransferase
2489	 33.88	0	2781668..2782213	-	181	118478267	-	BALH_2628	-	acetyltransferase
2490	 33.48	0	2782229..2782930	-	233	118478268	-	BALH_2629	-	nucleotidyltransferase
2491	 33.92	0	2782947..2783630	-	227	118478269	-	BALH_2630	-	hypothetical protein
2492	 34.87	0	2783996..2784256	-	86	118478270	-	BALH_2631	-	hypothetical protein
2493	 38.16	0	2784474..2785301	+	275	118478271	pgd	BALH_2632	-	peptidoglycan N-acetylglucosamine deacetylase
2494	 33.79	0	2785460..2786122	+	220	118478272	-	BALH_2633	-	hypothetical protein
2495	 38.69	0	2786233..2786904	+	223	118478273	-	BALH_2634	-	integral membrane protein
2496	 33.68	0	2786964..2788958	-	664	118478274	-	BALH_2635	-	phosphoglycerol transferase
2497	 36.90	0	2789455..2791080	-	541	118478275	-	BALH_2636	-	ABC transporter, ATP-binding protein
2498	 28.98	-1	2791447..2792295	-	282	118478276	-	BALH_2637	-	hypothetical protein
2499	 33.43	0	2792584..2795709	-	1041	118478277	-	BALH_2638	-	MmpL family membrane protein
2500	 32.98	0	2795954..2796520	-	188	118478278	-	BALH_2639	-	TetR family transcriptional regulator
2501	 32.73	0	2796828..2797985	-	385	118478279	-	BALH_2640	-	acetyltransferase
2502	 39.61	+1	2798119..2799408	-	429	118478280	aroA	BALH_2641	-	3-phosphoshikimate 1-carboxyvinyltransferase
2503	 37.38	0	2799425..2800561	-	378	118478281	-	BALH_2642	-	prephenate dehydrogenase
2504	 37.60	0	2800518..2801618	-	366	118478282	-	BALH_2643	-	histidinol-phosphate aminotransferase
2505	 39.13	+1	2801637..2802809	-	390	118478283	-	BALH_2644	-	chorismate synthase
2506	 38.44	0	2803092..2804168	-	358	118478284	-	BALH_2645	-	bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase
2507	 33.33	0	2805000..2808512	-	1170	118478285	-	BALH_2646	-	hypothetical protein
2508	 38.42	0	2809270..2809800	-	176	118478286	-	BALH_2647	-	isochorismatase
2509	 35.02	0	2809817..2810350	-	177	118478287	-	BALH_2648	-	acetyltransferase
2510	 32.77	0	2810756..2811292	+	178	118478288	-	BALH_2649	-	hypothetical protein
2511	 34.52	0	2811311..2811985	-	224	118478289	-	BALH_2650	-	hypothetical protein
2512	 38.94	0	2812215..2813729	-	504	118478290	-	BALH_2651	-	hypothetical protein
2513	 31.48	-1	2814125..2814610	+	161	118478291	-	BALH_2652	-	acetyltransferase
2514	 39.57	+1	2814721..2816244	-	507	118478292	-	BALH_2654	-	hypothetical protein
2515	 41.41	+1	2816263..2817054	-	263	118478293	crt	BALH_2655	-	enoyl-CoA hydratase
2516	 38.69	0	2817099..2818703	-	534	118478294	caiC	BALH_2656	-	crotonobetaine/carnitine-CoA ligase
2517	 37.41	0	2818945..2820684	-	579	118478295	-	BALH_2657	-	sensory box sigma-54 dependent DNA-binding response regulator
2518	 34.48	0	2821045..2822091	-	348	118478296	-	BALH_2658	-	hypothetical protein
2519	 38.12	0	2822472..2823974	+	500	118478297	-	BALH_2659	-	malate:quinone oxidoreductase
2520	 37.07	0	2824019..2825062	-	347	118478298	-	BALH_2660	-	sugar ABC transporter, sugar-binding protein
2521	 37.56	0	2825059..2826075	-	338	118478299	-	BALH_2661	-	sugar ABC transporter, permease
2522	 36.16	0	2826045..2826998	-	317	118478300	-	BALH_2663	-	sugar ABC transporter, permease
2523	 35.70	0	2826995..2828476	-	493	118478301	-	BALH_2664	-	sugar ABC transporter, ATP-binding protein
2524	 38.57	0	2828653..2829606	+	317	118478302	-	BALH_2665	-	deoxyribonucleoside regulator
2525	 40.41	+1	2829600..2831168	+	522	118478303	-	BALH_2666	-	autoinducer-2 (AI-2) kinase
2526	 38.73	0	2831149..2831556	+	135	118478304	-	BALH_2667	-	cupin domain-containing protein
2527	 41.51	+1	2831563..2832345	+	260	118478305	-	BALH_2668	-	aldolase
2528	 46.43	+2	2832468..2832971	-	167	118478306	-	BALH_2669	-	acetyltransferase
2529	 35.51	0	2833244..2833840	+	198	118478307	-	BALH_2670	-	hypothetical protein
2530	 32.06	-1	2834027..2834731	-	234	118478308	-	BALH_2671	-	hypothetical protein
2531	 30.10	-1	2834791..2835378	-	195	118478309	-	BALH_2672	-	hypothetical protein
2532	 37.50	0	2835478..2835813	-	111	118478310	-	BALH_2673	-	hypothetical protein
2533	 36.69	0	2835901..2837121	-	406	118478311	-	BALH_2674	-	macrolide efflux protein
2534	 35.44	0	2837173..2838216	-	347	118478312	-	BALH_2675	-	ArsR family transcriptional regulator
2535	 37.00	0	2838397..2838996	+	199	118478313	-	BALH_2676	-	hypothetical protein
2536	 33.33	0	2839200..2840393	+	397	118478314	nupC	BALH_2677	-	nucleoside transporter
2537	 37.74	0	2840443..2841759	-	438	118478315	proA	BALH_2678	-	gamma-glutamyl phosphate reductase
2538	 40.08	+1	2841722..2842966	-	414	118478316	-	BALH_2679	-	gamma-glutamyl kinase
2539	 36.26	0	2843524..2844342	+	272	118478317	proC	BALH_2680	-	pyrroline-5-carboxylate reductase
2540	 35.16	0	2844479..2846119	-	546	118478318	-	BALH_2681	-	M20 family peptidase
2541	 34.80	0	2846195..2846944	-	249	118478319	-	BALH_2682	-	IclR family transcriptional regulator
2542	 36.19	0	2847200..2848636	+	478	118478320	rocC	BALH_2683	-	amino acid permease, arginine permease
2543	 34.01	0	2848697..2849884	-	395	118478321	-	BALH_2684	-	hypothetical protein
2544	 34.98	0	2850157..2851188	-	343	118478322	-	BALH_2685	-	delta5 acyl-lipid desaturase
2545	 37.04	0	2851391..2853064	-	557	118478323	-	BALH_2686	-	alkaline phosphatase
2546	 33.54	0	2853340..2853831	+	163	118478324	-	BALH_2687	-	hypothetical protein
2547	 33.33	0	2853833..2854057	+	74	118478325	-	BALH_2688	-	Cro/CI family transcriptional regulator
2548	 29.46	-1	2854511..2854897	-	128	118478326	-	BALH_2689	-	hypothetical protein
2549	 34.36	0	2854894..2855577	-	227	118478327	-	BALH_2690	-	hypothetical protein
2550	 29.99	-1	2855667..2856983	-	438	118478328	-	BALH_2691	-	sensor histidine kinase
2551	 34.13	0	2856983..2857738	-	251	118478329	-	BALH_2692	-	response regulator
2552	 32.66	0	2857880..2858473	-	197	118478330	-	BALH_2693	-	uridine kinase
2553	 35.07	0	2858461..2859036	-	191	118478331	-	BALH_2694	-	ribosomal-protein-alanine acetyltransferase
2554	 31.51	-1	2859018..2859401	-	127	118478332	-	BALH_2695	-	lactoylglutathione lyase
2555	 31.10	-1	2860308..2860844	-	178	118478333	-	BALH_2696	-	hypothetical protein
2556	 38.29	0	2861358..2862305	+	315	118478334	-	BALH_2697	-	magnesium chelatase
2557	 34.62	0	2862302..2863465	+	387	118478335	-	BALH_2698	-	hypothetical protein
2558	 33.60	0	2863440..2864549	+	369	118478336	-	BALH_2699	-	hypothetical protein
2559	 36.27	0	2864601..2866100	-	499	118478337	-	BALH_2701	-	glycine betaine/L-proline ABC transporter, permease
2560	 25.29	-2	2866462..2866722	+	86	118478338	-	BALH_2702	-	hypothetical protein
2561	 32.80	0	2866806..2868302	+	498	118478339	-	BALH_2703	-	glycosyl transferase, group 2 family protein
2562	 34.57	0	2868444..2868686	-	80	118478340	-	BALH_2704	-	hypothetical protein
2563	 28.77	-2	2868804..2869088	+	94	118478341	-	BALH_2705	-	hypothetical protein
2564	 32.25	-1	2869301..2871691	-	796	118478342	-	BALH_2706	-	glycosyl transferase, group 2 family protein
2565	 33.08	0	2871675..2873237	-	520	118478343	-	BALH_2707	-	glycosyl transferase, group 2 family protein
2566	 28.84	-2	2873444..2874466	-	340	118478344	-	BALH_2708	-	hypothetical protein
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.