IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2436	 33.87	0	2732421..2733170	-	249	118478214	tarA	BALH_2572	-	N-acetylmannosaminyltransferase
2437	 31.25	-1	2733183..2734766	-	527	118478215	pepF	BALH_2573	-	oligoendopeptidase F
2438	 32.00	-1	2734886..2736157	-	423	118478216	-	BALH_2575	-	amino acid permease
2439	 33.10	0	2736285..2736719	+	144	118478217	lrpC	BALH_2576	-	AsnC family transcriptional regulator
2440	 36.47	0	2736754..2737614	-	286	118478218	degV	BALH_2577	-	DegV family protein
2441	 32.27	-1	2738070..2738540	-	156	118478219	cotX	BALH_2578	-	spore coat protein X, N-terminal region
2442	 23.88	-2	2738537..2738737	-	66	118478220	cotW	BALH_2579	-	spore coat protein W
2443	 30.76	-1	2739098..2739679	-	193	118478221	cotX	BALH_2580	-	spore coat protein X
2444	 32.08	-1	2740444..2740923	+	159	118478222	-	BALH_2581	-	acetyltransferase
2445	 32.51	0	2741970..2742335	+	121	118478223	-	BALH_2582	-	hypothetical protein
2446	 36.78	0	2742390..2743925	-	511	118478224	emrB	BALH_2583	-	multidrug resistance protein B
2447	 34.89	0	2743950..2744657	-	235	118478225	-	BALH_2584	-	hypothetical protein
2448	 36.01	0	2744676..2745386	-	236	118478226	-	BALH_2585	-	hypothetical protein
2449	 29.65	-1	2745400..2746050	-	216	118478227	-	BALH_2586	-	hypothetical protein
2450	 33.63	0	2746237..2747922	-	561	118478228	-	BALH_2587	-	oligopeptide ABC transporter, substrate-binding protein
2451	 35.30	0	2747937..2749259	+	440	118478229	-	BALH_2588	-	major facilitator family transporter
2452	 33.02	0	2749343..2749987	-	214	118478230	-	BALH_2589	-	hypothetical protein
2453	 32.46	0	2750313..2750882	-	189	118478231	-	BALH_2591	-	hypothetical protein
2454	 33.54	0	2751053..2751529	-	158	118478232	-	BALH_2593	-	hypothetical protein
2455	 38.03	0	2751560..2751772	+	70	118478233	-	BALH_2594	-	hypothetical protein
2456	 33.54	0	2751942..2752907	-	321	118478234	iunH	BALH_2595	-	inosine-uridine preferring nucleoside hydrolase
2457	 31.22	-1	2752985..2753173	-	62	118478235	-	BALH_2596	-	hypothetical protein
2458	 31.17	-1	2753244..2754029	-	261	118478236	-	BALH_2597	-	methyltransferase
2459	 30.41	-1	2754811..2755254	+	147	118478237	-	BALH_2598	-	hypothetical protein
2460	 34.00	0	2755519..2756721	+	400	118478238	-	BALH_2599	-	macrolide efflux protein
2461	 31.97	-1	2756782..2757222	-	146	118478239	-	BALH_2600	-	hypothetical protein
2462	 26.41	-2	2757314..2757703	+	129	118478240	-	BALH_2601	-	hypothetical protein
2463	 36.66	0	2757881..2759083	+	400	118478241	aspB	BALH_2602	-	aspartate aminotransferase
2464	 36.09	0	2759140..2759538	+	132	118478242	fabZ	BALH_2603	-	3-hydroxymyristoyl-(acyl carrier protein) dehydratase
2465	 32.49	0	2759631..2760461	+	276	118478243	-	BALH_2604	-	pantothenate kinase
2466	 32.98	0	2760468..2761034	-	188	118478244	-	BALH_2605	-	hypothetical protein
2467	 29.46	-1	2761607..2762278	-	223	118478245	-	BALH_2606	-	permease
2468	 30.13	-1	2762275..2763147	-	290	118478246	-	BALH_2607	-	ABC transporter, ATP-binding protein
2469	 34.12	0	2763144..2763524	-	126	118478247	-	BALH_2608	-	GntR family transcriptional regulator
2470	 34.22	0	2765485..2766606	-	373	118478248	-	BALH_2609	-	permease
2471	 31.20	-1	2766606..2767541	+	311	118478249	-	BALH_2610	-	hypothetical protein
2472	 39.75	+1	2768007..2769128	-	373	118478250	-	BALH_2611	-	alkanesulfonate monooxygenase
2473	 34.62	0	2769195..2770052	-	285	118478251	-	BALH_2612	-	alkanesulfonates transport system permease
2474	 34.35	0	2770060..2771046	-	328	118478252	-	BALH_2613	-	alkanesulfonates-binding protein
2475	 34.26	0	2771064..2771927	-	287	118478253	ssuB	BALH_2614	-	alkanesulfonates ABC transporter, ATP-binding protein
2476	 33.53	0	2772206..2772715	-	169	118478254	-	BALH_2615	-	hypothetical protein
2477	 37.98	0	2772819..2773313	-	164	118478255	-	BALH_2616	-	MutT/NUDIX family protein
2478	 30.29	-1	2773306..2774355	-	349	118478256	-	BALH_2617	-	hypothetical protein
2479	 35.61	0	2774368..2774850	-	160	118478257	-	BALH_2618	-	TPR repeat-containing protein
2480	 35.62	0	2774965..2775663	-	232	118478258	-	BALH_2619	-	hypothetical protein
2481	 37.44	0	2775670..2776473	-	267	118478259	-	BALH_2620	-	aminoglycoside N3'-acetyltransferase
2482	 29.78	-1	2776643..2777092	+	149	118478260	-	BALH_2621	-	hypothetical protein
2483	 34.62	0	2777145..2778392	-	415	118478261	-	BALH_2622	-	glutathionylspermidine synthase
2484	 35.62	0	2778413..2779024	-	203	118478262	-	BALH_2623	-	hypothetical protein
2485	 33.33	0	2779124..2779531	-	135	118478263	-	BALH_2624	-	acetyltransferase
2486	 38.13	0	2779588..2780526	-	312	118478264	-	BALH_2625	-	hypothetical protein
2487	 34.48	0	2780596..2781117	-	173	118478265	-	BALH_2626	-	hypothetical protein
2488	 34.73	0	2781133..2781633	-	166	118478266	-	BALH_2627	-	acetyltransferase
2489	 33.88	0	2781668..2782213	-	181	118478267	-	BALH_2628	-	acetyltransferase
2490	 33.48	0	2782229..2782930	-	233	118478268	-	BALH_2629	-	nucleotidyltransferase
2491	 33.92	0	2782947..2783630	-	227	118478269	-	BALH_2630	-	hypothetical protein
2492	 34.87	0	2783996..2784256	-	86	118478270	-	BALH_2631	-	hypothetical protein
2493	 38.16	0	2784474..2785301	+	275	118478271	pgd	BALH_2632	-	peptidoglycan N-acetylglucosamine deacetylase
2494	 33.79	0	2785460..2786122	+	220	118478272	-	BALH_2633	-	hypothetical protein
2495	 38.69	0	2786233..2786904	+	223	118478273	-	BALH_2634	-	integral membrane protein
2496	 33.68	0	2786964..2788958	-	664	118478274	-	BALH_2635	-	phosphoglycerol transferase
2497	 36.90	0	2789455..2791080	-	541	118478275	-	BALH_2636	-	ABC transporter, ATP-binding protein
2498	 28.98	-1	2791447..2792295	-	282	118478276	-	BALH_2637	-	hypothetical protein
2499	 33.43	0	2792584..2795709	-	1041	118478277	-	BALH_2638	-	MmpL family membrane protein
2500	 32.98	0	2795954..2796520	-	188	118478278	-	BALH_2639	-	TetR family transcriptional regulator
2501	 32.73	0	2796828..2797985	-	385	118478279	-	BALH_2640	-	acetyltransferase
2502	 39.61	+1	2798119..2799408	-	429	118478280	aroA	BALH_2641	-	3-phosphoshikimate 1-carboxyvinyltransferase
2503	 37.38	0	2799425..2800561	-	378	118478281	-	BALH_2642	-	prephenate dehydrogenase
2504	 37.60	0	2800518..2801618	-	366	118478282	-	BALH_2643	-	histidinol-phosphate aminotransferase
2505	 39.13	+1	2801637..2802809	-	390	118478283	-	BALH_2644	-	chorismate synthase
2506	 38.44	0	2803092..2804168	-	358	118478284	-	BALH_2645	-	bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase
2507	 33.33	0	2805000..2808512	-	1170	118478285	-	BALH_2646	-	hypothetical protein
2508	 38.42	0	2809270..2809800	-	176	118478286	-	BALH_2647	-	isochorismatase
2509	 35.02	0	2809817..2810350	-	177	118478287	-	BALH_2648	-	acetyltransferase
2510	 32.77	0	2810756..2811292	+	178	118478288	-	BALH_2649	-	hypothetical protein
2511	 34.52	0	2811311..2811985	-	224	118478289	-	BALH_2650	-	hypothetical protein
2512	 38.94	0	2812215..2813729	-	504	118478290	-	BALH_2651	-	hypothetical protein
2513	 31.48	-1	2814125..2814610	+	161	118478291	-	BALH_2652	-	acetyltransferase
2514	 39.57	+1	2814721..2816244	-	507	118478292	-	BALH_2654	-	hypothetical protein
2515	 41.41	+1	2816263..2817054	-	263	118478293	crt	BALH_2655	-	enoyl-CoA hydratase
2516	 38.69	0	2817099..2818703	-	534	118478294	caiC	BALH_2656	-	crotonobetaine/carnitine-CoA ligase
2517	 37.41	0	2818945..2820684	-	579	118478295	-	BALH_2657	-	sensory box sigma-54 dependent DNA-binding response regulator
2518	 34.48	0	2821045..2822091	-	348	118478296	-	BALH_2658	-	hypothetical protein
2519	 38.12	0	2822472..2823974	+	500	118478297	-	BALH_2659	-	malate:quinone oxidoreductase
2520	 37.07	0	2824019..2825062	-	347	118478298	-	BALH_2660	-	sugar ABC transporter, sugar-binding protein
2521	 37.56	0	2825059..2826075	-	338	118478299	-	BALH_2661	-	sugar ABC transporter, permease
2522	 36.16	0	2826045..2826998	-	317	118478300	-	BALH_2663	-	sugar ABC transporter, permease
2523	 35.70	0	2826995..2828476	-	493	118478301	-	BALH_2664	-	sugar ABC transporter, ATP-binding protein
2524	 38.57	0	2828653..2829606	+	317	118478302	-	BALH_2665	-	deoxyribonucleoside regulator
2525	 40.41	+1	2829600..2831168	+	522	118478303	-	BALH_2666	-	autoinducer-2 (AI-2) kinase
2526	 38.73	0	2831149..2831556	+	135	118478304	-	BALH_2667	-	cupin domain-containing protein
2527	 41.51	+1	2831563..2832345	+	260	118478305	-	BALH_2668	-	aldolase
2528	 46.43	+2	2832468..2832971	-	167	118478306	-	BALH_2669	-	acetyltransferase
2529	 35.51	0	2833244..2833840	+	198	118478307	-	BALH_2670	-	hypothetical protein
2530	 32.06	-1	2834027..2834731	-	234	118478308	-	BALH_2671	-	hypothetical protein
2531	 30.10	-1	2834791..2835378	-	195	118478309	-	BALH_2672	-	hypothetical protein
2532	 37.50	0	2835478..2835813	-	111	118478310	-	BALH_2673	-	hypothetical protein
2533	 36.69	0	2835901..2837121	-	406	118478311	-	BALH_2674	-	macrolide efflux protein
2534	 35.44	0	2837173..2838216	-	347	118478312	-	BALH_2675	-	ArsR family transcriptional regulator
2535	 37.00	0	2838397..2838996	+	199	118478313	-	BALH_2676	-	hypothetical protein
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.