IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2392	 36.07	0	2687439..2689556	-	705	118478170	recQ	BALH_2527	-	ATP-dependent DNA helicase RecQ
2393	 33.95	0	2690606..2691253	+	215	118478171	-	BALH_2528	-	hypothetical protein
2394	 28.29	-2	2691382..2691738	+	118	118478172	-	BALH_2529	-	hypothetical protein
2395	 29.36	-1	2691873..2692325	+	150	118478173	-	BALH_2530	-	hypothetical protein
2396	 35.98	0	2692826..2693278	-	150	118478174	-	BALH_2531	-	hypothetical protein
2397	 29.06	-1	2693299..2694516	-	405	118478175	-	BALH_2532	-	hypothetical protein
2398	 31.31	-1	2694666..2694863	+	65	118478176	-	BALH_2533	-	hypothetical protein
2399	 32.75	0	2694882..2696585	-	567	118478177	pepF	BALH_2534	-	oligoendopeptidase F
2400	 36.79	0	2696634..2697647	-	337	118478178	-	BALH_2535	-	putative manganese-dependent inorganic pyrophosphatase
2401	 37.24	0	2697725..2698390	-	221	118478179	-	BALH_2536	-	chitin-binding protein
2402	 33.33	0	2698615..2699118	-	167	118478180	-	BALH_2537	-	acetyltransferase
2403	 35.15	0	2699336..2699776	-	146	118478181	-	BALH_2538	-	carboxymuconolactone decarboxylase
2404	 37.44	0	2699807..2701315	-	502	118478182	-	BALH_2539	-	sodium/proton-dependent alanine carrier protein
2405	 38.86	0	2701405..2702889	-	494	118478183	-	BALH_2540	-	aldehyde dehydrogenase (acceptor)
2406	 36.60	0	2702908..2703825	-	305	118478184	-	BALH_2541	-	dihydrodipicolinate synthase
2407	 33.76	0	2703827..2704768	-	313	118478185	-	BALH_2542	-	proline racemase
2408	 38.63	0	2704765..2705802	-	345	118478186	-	BALH_2543	-	proline racemase
2409	 39.88	+1	2705799..2706974	-	391	118478187	-	BALH_2544	-	sarcosine oxidase, beta subunit
2410	 36.64	0	2707155..2708816	+	553	118478188	-	BALH_2545	-	sigma-54-dependent transcriptional activator
2411	 38.05	0	2708846..2709163	+	105	118478189	-	BALH_2546	-	hypothetical protein
2412	 37.84	0	2709160..2709492	+	110	118478190	-	BALH_2547	-	sarcosine oxidase, alpha subunit
2413	 41.10	+1	2709489..2710724	+	411	118478191	-	BALH_2548	-	sarcosine oxidase, alpha subunit
2414	 35.60	0	2710749..2711057	-	102	118478192	-	BALH_2549	-	hypothetical protein
2415	 33.78	0	2711045..2711494	-	149	118478193	-	BALH_2550	-	hypothetical protein
2416	 34.51	0	2711753..2712517	+	254	118478194	-	BALH_2551	-	hypothetical protein
2417	 35.31	0	2712753..2713358	+	201	118478195	-	BALH_2552	-	DedA family protein
2418	 30.47	-1	2713398..2713886	-	162	118478196	-	BALH_2553	-	hypothetical protein
2419	 31.73	-1	2714290..2715471	-	393	118478197	-	BALH_2554	-	membrane anchor protein associated with esterification of lipoteichoic acid (LTA)
2420	 32.32	0	2715771..2716265	-	164	118478198	-	BALH_2555	-	ribosomal-protein-alanine acetyltransferase
2421	 33.83	0	2716383..2718005	-	540	118478199	oppA	BALH_2556	-	oligopeptide transporter, periplasmic-binding protein
2422	 38.62	0	2718026..2719027	-	333	118478200	-	BALH_2557	-	cell wall-associated hydrolase
2423	 37.69	0	2719067..2720146	-	359	118478201	-	BALH_2558	-	mandelate racemase/muconate lactonizing enzyme
2424	 33.94	0	2720272..2720598	-	108	118478202	-	BALH_2559	-	hypothetical protein
2425	 28.01	-2	2720860..2721216	-	118	118478203	-	BALH_2560	-	cell division protein
2426	 34.26	0	2721883..2722314	+	143	118478204	-	BALH_2561	-	hypothetical protein
2427	 33.33	0	2723114..2723377	-	87	118478205	-	BALH_2562	-	hypothetical protein
2428	 35.29	0	2723565..2724329	-	254	118478206	-	BALH_2563	-	methyltransferase
2429	 37.42	0	2724874..2726706	-	610	118478207	-	BALH_2564	-	x-prolyl-dipeptidyl aminopeptidase
2430	 29.77	-1	2726846..2728222	-	458	118478208	-	BALH_2566	-	sensor histidine kinase
2431	 32.87	0	2728215..2728862	-	215	118478209	-	BALH_2567	-	two-component response regulator
2432	 30.48	-1	2728876..2729400	+	174	118478210	-	BALH_2568	-	hypothetical protein
2433	 29.36	-1	2729547..2729999	-	150	118478211	-	BALH_2569	-	acetyltransferase
2434	 30.29	-1	2730267..2731022	-	251	118478212	-	BALH_2570	-	alpha/beta hydrolase
2435	 33.55	0	2731024..2732403	-	459	118478213	-	BALH_2571	-	bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase
2436	 33.87	0	2732421..2733170	-	249	118478214	tarA	BALH_2572	-	N-acetylmannosaminyltransferase
2437	 31.25	-1	2733183..2734766	-	527	118478215	pepF	BALH_2573	-	oligoendopeptidase F
2438	 32.00	-1	2734886..2736157	-	423	118478216	-	BALH_2575	-	amino acid permease
2439	 33.10	0	2736285..2736719	+	144	118478217	lrpC	BALH_2576	-	AsnC family transcriptional regulator
2440	 36.47	0	2736754..2737614	-	286	118478218	degV	BALH_2577	-	DegV family protein
2441	 32.27	-1	2738070..2738540	-	156	118478219	cotX	BALH_2578	-	spore coat protein X, N-terminal region
2442	 23.88	-2	2738537..2738737	-	66	118478220	cotW	BALH_2579	-	spore coat protein W
2443	 30.76	-1	2739098..2739679	-	193	118478221	cotX	BALH_2580	-	spore coat protein X
2444	 32.08	-1	2740444..2740923	+	159	118478222	-	BALH_2581	-	acetyltransferase
2445	 32.51	0	2741970..2742335	+	121	118478223	-	BALH_2582	-	hypothetical protein
2446	 36.78	0	2742390..2743925	-	511	118478224	emrB	BALH_2583	-	multidrug resistance protein B
2447	 34.89	0	2743950..2744657	-	235	118478225	-	BALH_2584	-	hypothetical protein
2448	 36.01	0	2744676..2745386	-	236	118478226	-	BALH_2585	-	hypothetical protein
2449	 29.65	-1	2745400..2746050	-	216	118478227	-	BALH_2586	-	hypothetical protein
2450	 33.63	0	2746237..2747922	-	561	118478228	-	BALH_2587	-	oligopeptide ABC transporter, substrate-binding protein
2451	 35.30	0	2747937..2749259	+	440	118478229	-	BALH_2588	-	major facilitator family transporter
2452	 33.02	0	2749343..2749987	-	214	118478230	-	BALH_2589	-	hypothetical protein
2453	 32.46	0	2750313..2750882	-	189	118478231	-	BALH_2591	-	hypothetical protein
2454	 33.54	0	2751053..2751529	-	158	118478232	-	BALH_2593	-	hypothetical protein
2455	 38.03	0	2751560..2751772	+	70	118478233	-	BALH_2594	-	hypothetical protein
2456	 33.54	0	2751942..2752907	-	321	118478234	iunH	BALH_2595	-	inosine-uridine preferring nucleoside hydrolase
2457	 31.22	-1	2752985..2753173	-	62	118478235	-	BALH_2596	-	hypothetical protein
2458	 31.17	-1	2753244..2754029	-	261	118478236	-	BALH_2597	-	methyltransferase
2459	 30.41	-1	2754811..2755254	+	147	118478237	-	BALH_2598	-	hypothetical protein
2460	 34.00	0	2755519..2756721	+	400	118478238	-	BALH_2599	-	macrolide efflux protein
2461	 31.97	-1	2756782..2757222	-	146	118478239	-	BALH_2600	-	hypothetical protein
2462	 26.41	-2	2757314..2757703	+	129	118478240	-	BALH_2601	-	hypothetical protein
2463	 36.66	0	2757881..2759083	+	400	118478241	aspB	BALH_2602	-	aspartate aminotransferase
2464	 36.09	0	2759140..2759538	+	132	118478242	fabZ	BALH_2603	-	3-hydroxymyristoyl-(acyl carrier protein) dehydratase
2465	 32.49	0	2759631..2760461	+	276	118478243	-	BALH_2604	-	pantothenate kinase
2466	 32.98	0	2760468..2761034	-	188	118478244	-	BALH_2605	-	hypothetical protein
2467	 29.46	-1	2761607..2762278	-	223	118478245	-	BALH_2606	-	permease
2468	 30.13	-1	2762275..2763147	-	290	118478246	-	BALH_2607	-	ABC transporter, ATP-binding protein
2469	 34.12	0	2763144..2763524	-	126	118478247	-	BALH_2608	-	GntR family transcriptional regulator
2470	 34.22	0	2765485..2766606	-	373	118478248	-	BALH_2609	-	permease
2471	 31.20	-1	2766606..2767541	+	311	118478249	-	BALH_2610	-	hypothetical protein
2472	 39.75	+1	2768007..2769128	-	373	118478250	-	BALH_2611	-	alkanesulfonate monooxygenase
2473	 34.62	0	2769195..2770052	-	285	118478251	-	BALH_2612	-	alkanesulfonates transport system permease
2474	 34.35	0	2770060..2771046	-	328	118478252	-	BALH_2613	-	alkanesulfonates-binding protein
2475	 34.26	0	2771064..2771927	-	287	118478253	ssuB	BALH_2614	-	alkanesulfonates ABC transporter, ATP-binding protein
2476	 33.53	0	2772206..2772715	-	169	118478254	-	BALH_2615	-	hypothetical protein
2477	 37.98	0	2772819..2773313	-	164	118478255	-	BALH_2616	-	MutT/NUDIX family protein
2478	 30.29	-1	2773306..2774355	-	349	118478256	-	BALH_2617	-	hypothetical protein
2479	 35.61	0	2774368..2774850	-	160	118478257	-	BALH_2618	-	TPR repeat-containing protein
2480	 35.62	0	2774965..2775663	-	232	118478258	-	BALH_2619	-	hypothetical protein
2481	 37.44	0	2775670..2776473	-	267	118478259	-	BALH_2620	-	aminoglycoside N3'-acetyltransferase
2482	 29.78	-1	2776643..2777092	+	149	118478260	-	BALH_2621	-	hypothetical protein
2483	 34.62	0	2777145..2778392	-	415	118478261	-	BALH_2622	-	glutathionylspermidine synthase
2484	 35.62	0	2778413..2779024	-	203	118478262	-	BALH_2623	-	hypothetical protein
2485	 33.33	0	2779124..2779531	-	135	118478263	-	BALH_2624	-	acetyltransferase
2486	 38.13	0	2779588..2780526	-	312	118478264	-	BALH_2625	-	hypothetical protein
2487	 34.48	0	2780596..2781117	-	173	118478265	-	BALH_2626	-	hypothetical protein
2488	 34.73	0	2781133..2781633	-	166	118478266	-	BALH_2627	-	acetyltransferase
2489	 33.88	0	2781668..2782213	-	181	118478267	-	BALH_2628	-	acetyltransferase
2490	 33.48	0	2782229..2782930	-	233	118478268	-	BALH_2629	-	nucleotidyltransferase
2491	 33.92	0	2782947..2783630	-	227	118478269	-	BALH_2630	-	hypothetical protein
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.