IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2131	 38.38	0	2414603..2415553	+	316	118477909	-	BALH_2254	-	beta-lactamase
2132	 36.43	0	2416393..2417394	+	333	118477910	-	BALH_2255	-	LacI family transcription regulator
2133	 36.92	0	2417482..2418762	-	426	118477911	-	BALH_2256	-	alpha-ketoglutarate permease
2134	 37.43	0	2419253..2420278	+	341	118477912	-	BALH_2257	-	Gfo/Idh/MocA family oxidoreductase
2135	 39.98	+1	2420335..2421372	+	345	118477913	-	BALH_2258	-	myo-inositol catabolism protein
2136	 39.65	+1	2421412..2422914	+	500	118477914	-	BALH_2259	-	methylmalonate-semialdehyde dehydrogenase [acylating]
2137	 38.97	0	2423069..2425003	+	644	118477915	-	BALH_2260	-	malonic semialdehyde oxidative decarboxylase
2138	 37.57	0	2425126..2426022	+	298	118477916	-	BALH_2261	-	myo-inositol catabolism protein
2139	 38.16	0	2426106..2426996	+	296	118477917	fbaA	BALH_2262	-	fructose-bisphosphate aldolase
2140	 38.51	0	2427102..2427893	+	263	118477918	-	BALH_2263	-	myo-inositol catabolism protein
2141	 36.71	0	2428086..2428292	-	68	118477919	-	BALH_2264	-	hypothetical protein
2142	 30.23	-1	2428583..2429098	+	171	118477920	-	BALH_2265	-	hypothetical protein
2143	 37.07	0	2429465..2429758	+	97	118477921	-	BALH_2266	-	hypothetical protein
2144	 34.99	0	2429965..2431950	+	661	118477922	cpdC	BALH_2267	-	2',3'-cyclic-nucleotide 2'-phosphodiesterase
2145	 29.02	-1	2432384..2433496	-	370	118477923	-	BALH_2268	-	response regulator aspartate phosphatase
2146	 33.81	0	2434023..2434232	+	69	118477924	-	BALH_2269	-	transcriptional regulator, DNA-binding protein
2147	 32.16	-1	2435141..2435395	-	84	118477925	-	BALH_2270	-	hypothetical protein
2148	 34.70	0	2435642..2436373	+	243	118477926	-	BALH_2271	-	M15B family D-Ala-D-Ala carboxypeptidase VanY
2149	 33.11	0	2436706..2437149	-	147	118477927	-	BALH_2272	-	hypothetical protein
2150	 35.28	0	2438006..2439241	+	411	118477928	-	BALH_2274	-	N-acetylmuramoyl-L-alanine amidase
2151	 32.93	0	2439530..2440780	+	416	118477929	-	BALH_2275	-	hemolysin II
2152	 31.92	-1	2441158..2441793	+	211	118477930	-	BALH_2276	-	TetR family transcriptional regulator
2153	 33.74	0	2441916..2443394	-	492	118477931	-	BALH_2277	-	ABC transporter, ATP-binding protein
2154	 27.61	-2	2444391..2445473	+	360	118477932	-	BALH_2278	-	sensory box/GGDEF family protein
2155	 34.34	0	2445642..2447129	+	495	118477933	-	BALH_2279	-	diguanylate cyclase/phosphodiesterase
2156	 31.76	-1	2447574..2448080	+	168	118477934	-	BALH_2280	-	ribosomal-protein-serine acetyltransferase
2157	 33.79	0	2449348..2451330	+	660	118477935	mcpB	BALH_2281	-	methyl-accepting chemotaxis protein
2158	 33.99	0	2451426..2451731	-	101	118477936	-	BALH_2282	-	hypothetical protein
2159	 34.83	0	2452251..2453450	+	399	118477937	-	BALH_2283	-	sulfide-quinone reductase
2160	 35.40	0	2453502..2454953	+	483	118477938	-	BALH_2284	-	hydroxyacylglutathione hydrolase
2161	 26.59	-2	2455535..2455786	+	83	118477939	-	BALH_2285	-	hypothetical protein
2162	 30.33	-1	2456385..2456684	-	99	118477940	-	BALH_2286	-	hypothetical protein
2163	 32.20	-1	2456914..2457882	+	322	118477941	-	BALH_2287	-	hypothetical protein
2164	 38.69	0	2458087..2459244	+	385	118477942	bcd	BALH_2288	-	acyl-CoA dehydrogenase
2165	 37.44	0	2459260..2460597	+	445	118477943	-	BALH_2289	-	acetyl-CoA carboxylase biotin carboxylase subunit
2166	 36.57	0	2460624..2460839	+	71	118477944	-	BALH_2290	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
2167	 36.95	0	2460861..2461772	+	303	118477945	-	BALH_2291	-	hydroxymethylglutaryl-CoA lyase
2168	 38.02	0	2461777..2462565	+	262	118477946	crt	BALH_2292	-	enoyl-CoA hydratase
2169	 38.33	0	2462568..2464109	+	513	118477947	pccB	BALH_2293	-	propionyl-CoA carboxylase
2170	 38.90	0	2464159..2466099	+	646	118477948	acs	BALH_2294	-	acetate--CoA ligase
2171	 34.85	0	2466269..2466598	+	109	118477949	-	BALH_2295	-	hypothetical protein
2172	 30.57	-1	2466647..2467261	+	204	118477950	-	BALH_2296	-	aminoglycoside N(6')-acetyltransferase
2173	 29.23	-1	2467262..2467870	+	202	118477951	-	BALH_2297	-	hypothetical protein
2174	 33.33	0	2467863..2468603	+	246	118477952	-	BALH_2298	-	alpha/beta fold family hydrolase
2175	 33.55	0	2468606..2469064	+	152	118477953	-	BALH_2299	-	hypothetical protein
2176	 30.88	-1	2469122..2470138	-	338	118477954	dacA	BALH_2300	-	D-alanyl-D-alanine carboxypeptidase
2177	 32.12	-1	2470319..2471476	-	385	118477955	vanS	BALH_2301	-	sensor histidine kinase
2178	 30.25	-1	2471466..2472212	-	248	118477956	vanR	BALH_2302	-	DNA-binding response regulator
2179	 32.02	-1	2472353..2472961	+	202	118477957	-	BALH_2303	-	HAD superfamily hydrolase
2180	 26.80	-2	2473230..2473535	+	101	118477958	-	BALH_2304	-	hypothetical protein
2181	 35.23	0	2473532..2474269	+	245	118477959	-	BALH_2305	-	S-adenosylhomocysteine nucleosidase
2182	 30.97	-1	2474286..2474921	+	211	118477960	-	BALH_2306	-	hypothetical protein
2183	 29.92	-1	2475015..2475863	+	282	118477961	-	BALH_2307	-	acetyltransferase
2184	 24.27	-2	2475971..2476345	+	124	118477962	-	BALH_2308	-	hypothetical protein
2185	 34.46	0	2476515..2479187	+	890	118477963	-	BALH_2309	-	bacillolysin
2186	 36.14	0	2479451..2480020	+	189	118477964	-	BALH_2310	-	hypothetical protein
2187	 29.51	-1	2480058..2480894	+	278	118477965	-	BALH_2311	-	hypothetical protein
2188	 28.78	-2	2480982..2481464	+	160	118477966	-	BALH_2312	-	hypothetical protein
2189	 31.85	-1	2481541..2484711	+	1056	118477967	-	BALH_2313	-	excinuclease ABC, A subunit-related protein
2190	 28.36	-2	2485096..2485437	+	113	118477968	-	BALH_2314	-	PadR family transcriptional regulator
2191	 27.64	-2	2485368..2485964	+	198	118477969	-	BALH_2315	-	hypothetical protein
2192	 30.64	-1	2485945..2487390	+	481	118477970	-	BALH_2316	-	penicillin-binding protein
2193	 32.72	0	2487512..2488321	+	269	118477971	-	BALH_2317	-	MerR family transcriptional regulator
2194	 34.64	0	2488418..2489644	-	408	118477972	-	BALH_2319	-	macrolide-efflux protein
2195	 30.83	-1	2489842..2490441	+	199	118477973	-	BALH_2320	-	mutT/Nudix family protein
2196	 33.71	0	2490623..2491417	+	264	118477974	-	BALH_2321	-	glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein
2197	 28.90	-2	2491825..2492772	-	315	118477975	-	BALH_2322	-	hypothetical protein
2198	 29.62	-1	2493085..2494188	+	367	118477976	araC	BALH_2323	-	AraC family transcriptional regulator
2199	 29.73	-1	2494203..2495894	-	563	118477977	pepF	BALH_2324	-	oligoendopeptidase F
2200	 30.98	-1	2496064..2496657	+	197	118477978	-	BALH_2325	-	hypothetical protein
2201	 30.56	-1	2496728..2498098	+	456	118477979	gntR	BALH_2326	-	GntR family transcriptional regulator
2202	 31.32	-1	2498119..2498466	+	115	118477980	-	BALH_2327	-	hypothetical protein
2203	 25.93	-2	2498873..2499115	-	80	118477981	-	BALH_2328	-	hypothetical protein
2204	 30.35	-1	2499358..2499558	+	66	118477982	-	BALH_2329	-	hypothetical protein
2205	 30.48	-1	2499934..2500563	+	209	118477983	-	BALH_2330	-	methyltransferase
2206	 30.20	-1	2500817..2501518	-	233	118477984	-	BALH_2331	-	methyltransferase
2207	 35.64	0	2501515..2502426	-	303	118477985	-	BALH_2332	-	regucalcin-like protein
2208	 31.21	-1	2503144..2504697	+	517	118477986	-	BALH_2333	-	lysyl-tRNA synthetase
2209	 42.89	+2	2504757..2505185	-	142	118477987	cwlJ	BALH_2334	-	cell wall hydrolase
2210	 37.06	0	2505331..2506242	+	303	118477988	-	BALH_2335	-	acetamidase
2211	 34.32	0	2506372..2507079	+	235	118477989	-	BALH_2336	-	response regulator
2212	 32.74	0	2507055..2508059	+	334	118477990	-	BALH_2337	-	two-component sensor histidine kinase
2213	 34.13	0	2508362..2508988	-	208	118477991	-	BALH_2338	-	hypothetical protein
2214	 33.70	0	2509513..2511159	+	548	118477992	expZ	BALH_2339	-	ABC transporter, ATP-binding protein
2215	 31.31	-1	2511169..2511762	+	197	118477993	-	BALH_2340	-	acetyltransferase
2216	 27.00	-2	2512147..2512683	+	178	118477994	-	BALH_2341	-	hypothetical protein
2217	 33.33	0	2512934..2513767	+	277	118477995	-	BALH_2342	-	ABC transporter, ATP-binding protein
2218	 30.64	-1	2513742..2515673	+	643	118477996	-	BALH_2344	-	ABC transporter, permease component
2219	 29.39	-1	2515726..2516409	+	227	118477997	-	BALH_2345	-	hypothetical protein
2220	 30.12	-1	2516465..2516869	-	134	118477998	-	BALH_2346	-	hypothetical protein
2221	 36.23	0	2517060..2518301	+	413	118477999	-	BALH_2347	-	lipase (triacylglycerol lipase)
2222	 32.77	0	2518362..2519432	+	356	118478000	hom	BALH_2348	-	homoserine dehydrogenase
2223	 33.20	0	2519554..2521002	+	482	118478001	-	BALH_2349	-	GntR family transcriptional regulator
2224	 34.19	0	2520986..2521921	+	311	118478002	ddl	BALH_2350	-	D-alanine--D-alanine ligase
2225	 35.37	0	2522175..2522912	+	245	118478003	-	BALH_2351	-	transcriptional activator
2226	 31.51	-1	2524378..2524596	+	72	118478004	-	BALH_2352	-	hypothetical protein
2227	 32.47	0	2525622..2526086	-	154	118478005	-	BALH_2353	-	exosporium protein D
2228	 29.64	-1	2526643..2529054	+	803	118478006	-	BALH_2354	-	hypothetical protein
2229	 32.69	0	2529263..2530036	+	257	118478007	-	BALH_2356	-	hypothetical protein
2230	 26.32	-2	2531488..2531715	-	75	118478008	-	BALH_2357	-	hypothetical protein
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.