IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
169	 36.86	0	188278..190008	+	576	118475947	-	BALH_0180	-	hypothetical protein
170	 39.49	+1	190136..191386	+	416	118475948	-	BALH_0182	-	Bcr/CflA subfamily drug resistance transporter
171	 34.13	0	191637..192140	+	167	118475949	-	BALH_0183	-	hypothetical protein
172	 35.73	0	192787..193704	+	305	118475950	oppB	BALH_0184	-	oligopeptide ABC transporter, permease component
173	 38.31	0	193721..194725	+	334	118475951	oppC	BALH_0185	-	oligopeptide ABC transporter, permease component
174	 36.89	0	194682..195692	+	336	118475952	oppD	BALH_0186	-	oligopeptide ABC transporter, ATP-binding protein
175	 38.63	0	195689..196462	+	257	118475953	oppF	BALH_0187	-	oligopeptide ABC transporter, ATP-binding protein
176	 32.46	0	196476..198086	+	536	118475954	oppA	BALH_0188	-	oligopeptide transporter, periplasmic-binding protein
177	 31.15	-1	198103..198606	-	167	118475955	-	BALH_0189	-	hypothetical protein
178	 36.22	0	198743..199642	+	299	118475956	-	BALH_0190	-	AraC family transcriptional regulator
179	 33.51	0	199918..200499	+	193	118475957	-	BALH_0191	-	TetR/AcrR family transcriptional regulator
180	 34.36	0	200525..201697	+	390	118475958	-	BALH_0192	-	hypothetical protein
181	 36.38	0	201742..203514	-	590	118475959	oppA	BALH_0194	-	oligopeptide transporter, periplasmic-binding protein
182	 35.41	0	203770..205410	-	546	118475960	oppA	BALH_0195	-	oligopeptide transporter, periplasmic-binding protein
183	 35.25	0	205803..206636	-	277	118475961	-	BALH_0196	-	aldo/keto reductase
184	 40.05	+1	206638..207441	-	267	118475962	proC	BALH_0197	-	pyrroline-5-carboxylate reductase
185	 31.08	-1	207541..208251	+	236	118475963	pnuC	BALH_0198	-	nicotinamide mononucleotide transporter
186	 37.09	0	208319..209170	-	283	118475964	glcU	BALH_0200	-	glucose uptake protein
187	 38.52	0	209472..210146	-	224	118475966	modC	BALH_0202	-	molybdenum ABC transporter, permease component
188	 36.59	0	209923..210168	+	81	118475965	-	BALH_0201	-	hypothetical protein
189	 35.19	0	210152..210958	-	268	118475967	modA	BALH_0203	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
190	 34.39	0	211093..212040	+	315	118475968	-	BALH_0204	-	molybdate-binding protein
191	 35.67	0	212611..213507	-	298	118475969	-	BALH_0205	-	LysR family transcriptional regulator
192	 34.89	0	213545..214573	+	342	118475970	-	BALH_0206	-	DMT family permease
193	 35.48	0	215103..215708	+	201	118475971	plsC	BALH_0207	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
194	 36.71	0	216184..217161	+	325	118475972	-	BALH_0208	-	LacI family transcription regulator
195	 35.13	0	217759..218595	+	278	118475973	-	BALH_0209	-	hypothetical protein
196	 34.15	0	218694..219059	+	121	118475974	-	BALH_0210	-	hypothetical protein
197	 33.57	0	219765..220616	+	283	118475975	-	BALH_0211	-	TatD-related deoxyribonuclease
198	 31.77	-1	220713..222251	+	512	118475976	-	BALH_0212	-	hypothetical protein
199	 32.30	0	222287..223936	-	549	118475977	-	BALH_0213	-	hypothetical protein
200	 38.58	0	224187..224720	+	177	118475978	-	BALH_0214	-	invasion protein LagB
201	 33.45	0	224736..225620	-	294	118475979	-	BALH_0215	-	hypothetical protein
202	 33.33	0	226145..226336	+	63	118475980	-	BALH_0216	-	hypothetical protein
203	 36.73	0	226398..228341	+	647	118475981	-	BALH_0217	-	ABC transporter, ATP-binding protein
204	 34.83	0	229230..230966	+	578	118475982	oppA	BALH_0218	-	oligopeptide transporter, periplasmic-binding protein
205	 32.82	0	231060..232031	+	323	118475983	oppB	BALH_0220	-	oligopeptide ABC transporter, permease component
206	 37.88	0	232044..232967	+	307	118475984	oppC	BALH_0221	-	oligopeptide ABC transporter, permease component
207	 36.90	0	232978..233958	+	326	118475985	oppD	BALH_0222	-	oligopeptide ABC transporter, ATP-binding protein
208	 39.44	+1	233955..234920	+	321	118475986	oppF	BALH_0223	-	oligopeptide ABC transporter, ATP-binding protein
209	 33.65	0	234960..235919	-	319	118475987	-	BALH_0224	-	HAD superfamily hydrolase
210	 36.24	0	237251..238420	+	389	118475988	hppD	BALH_0225	-	4-hydroxyphenylpyruvate dioxygenase
211	 39.69	+1	238484..239443	+	319	118475989	hpcE	BALH_0226	-	fumarylacetoacetate hydrolase
212	 39.59	+1	239400..240581	+	393	118475990	hmgA	BALH_0227	-	homogentisate 1,2-dioxygenase
213	 38.16	0	240798..242228	+	476	118475991	-	BALH_0228	-	amino acid permease
214	 37.73	0	242313..243608	+	431	118475992	-	BALH_0229	-	major facilitator family transporter
215	 36.50	0	243973..245076	+	367	118475993	ddl	BALH_0230	-	D-alanyl-alanine synthetase A
216	 36.53	0	245137..246513	+	458	118475994	murF	BALH_0231	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
217	 41.65	+1	246819..248405	+	528	118475995	deaD	BALH_0232	-	DEAD-box ATP dependent DNA helicase
218	 35.44	0	248421..249464	+	347	118475996	uvsE	BALH_0233	-	putative UV damage endonuclease
219	 36.82	0	249457..250029	-	190	118475997	-	BALH_0234	-	rhomboid family protein
220	 36.11	0	250122..250481	+	119	118475998	acpS	BALH_0235	-	holo-[acyl-carrier protein] synthase
221	 36.73	0	250500..251588	+	362	118475999	-	BALH_0236	-	hypothetical protein
222	 38.46	0	251707..252876	+	389	118476000	alr	BALH_0237	-	alanine racemase
223	 41.67	+1	253186..253473	+	95	118476001	-	BALH_0238	-	hypothetical protein
224	 40.17	+1	253478..253828	+	116	118476002	-	BALH_0239	-	pemK-like protein
225	 36.46	0	253890..256064	+	724	118476003	-	BALH_0240	-	transcription accessory protein
226	 35.05	0	256428..256892	+	154	118476004	-	BALH_0241	-	hypothetical protein
227	 35.40	0	263321..263803	+	160	118476005	-	BALH_0243	-	kinase
228	 35.58	0	263676..264476	+	266	118476006	gcp	BALH_0244	-	O-sialoglycoprotein endopeptidase
229	 35.98	0	264481..264933	+	150	118476007	rimI	BALH_0245	-	SSU ribosomal protein S18P alanine acetyltransferase
230	 40.02	+1	264918..265949	+	343	118476008	gcp	BALH_0246	-	O-sialoglycoprotein endopeptidase
231	 35.71	0	266370..268346	-	658	118476009	-	BALH_0247	-	ABC transporter, ATP-binding protein
232	 35.40	0	268480..269109	+	209	118476010	-	BALH_0248	-	redox-sensing transcriptional repressor Rex
233	 35.60	0	269327..270076	-	249	118476011	-	BALH_0249	-	CAAX amino protease
234	 39.30	+1	270478..270762	+	94	162382787	groES	BALH_0250	-	co-chaperonin GroES
235	 41.77	+1	270801..272435	+	544	118476013	groEL	BALH_0251	-	chaperonin GroEL
236	 35.35	0	272722..273762	+	346	118476014	-	BALH_0252	-	hypothetical protein
237	 29.61	-1	273786..274241	+	151	118476015	-	BALH_0253	-	hypothetical protein
238	 39.79	+1	274901..276448	+	515	118476016	guaA	BALH_0254	-	bifunctional GMP synthase/glutamine amidotransferase protein
239	 30.88	-1	276584..277438	+	284	118476017	-	BALH_0255	-	hypothetical protein
240	 32.26	-1	277538..278746	-	402	118476018	-	BALH_0256	-	phage integrase family site specific recombinase
241	 33.33	0	278715..278930	-	71	118476019	-	BALH_0257	-	hypothetical protein
242	 30.32	-1	279218..280048	-	276	118476020	-	BALH_0258	-	Rep protein
243	 35.65	0	280204..281541	-	445	118476021	-	BALH_0259	-	FtsK/SpoIIIE family protein
244	 36.34	0	281548..281880	-	110	118476022	-	BALH_0260	-	hypothetical protein
245	 33.52	0	282019..282540	-	173	118476023	-	BALH_0261	-	hypothetical protein
246	 29.63	-1	282647..283240	+	197	118476024	-	BALH_0262	-	hypothetical protein
247	 40.27	+1	283788..285113	+	441	118476025	-	BALH_0264	-	guanine-hypoxanthine permease, xanthine/uracil permease family protein
248	 36.32	0	285259..285960	+	233	118476026	-	BALH_0265	-	DNA-binding response regulator
249	 34.26	0	285944..287449	+	501	118476027	-	BALH_0266	-	sensor histidine kinase
250	 35.00	0	292808..293767	+	319	118476028	-	BALH_0268	-	alpha/beta hydrolase
251	 36.20	0	293933..294664	+	243	118476029	frnE	BALH_0269	-	frnE protein
252	 25.67	-2	300262..300561	+	99	118476030	galE	BALH_0271	-	UDP-glucose 4-epimerase, N-terminal region
253	 33.97	0	301339..301650	-	103	118476031	-	BALH_0272	-	glycosyl transferase, group 1 family protein
254	 36.84	0	307570..308367	-	265	118476032	bacA	BALH_0274	-	undecaprenyl pyrophosphate phosphatase
255	 34.53	0	308385..309137	-	250	118476033	bcrB	BALH_0275	-	bacitracin ABC transporter, permease component
256	 34.30	0	309115..310044	-	309	118476034	bcrA	BALH_0276	-	bacitracin ABC transporter, ATP-binding protein
257	 33.53	0	310113..311135	-	340	118476035	-	BALH_0277	-	sensor histidine kinase
258	 32.49	0	311116..311829	-	237	118476036	-	BALH_0278	-	DNA-binding response regulator
259	 33.55	0	317361..318293	+	310	118476037	-	BALH_0279	-	DMT family permease
260	 33.33	0	318376..319167	-	263	118476038	-	BALH_0280	-	hypothetical protein
261	 41.42	+1	324944..325450	+	168	118476039	purE	BALH_0282	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
262	 37.76	0	325447..326598	+	383	118476040	purK	BALH_0283	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
263	 37.87	0	326559..327902	+	447	118476041	purB	BALH_0284	-	adenylosuccinate lyase
264	 35.39	0	327934..328710	+	258	118476042	purC	BALH_0285	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
265	 35.29	0	328703..328957	+	84	118476043	purS	BALH_0286	-	phosphoribosylformylglycinamidine synthase subunit PurS
266	 38.30	0	328954..329637	+	227	118476044	purQ	BALH_0287	-	phosphoribosylformylglycinamidine synthase subunit I
267	 40.72	+1	329621..331840	+	739	118476045	purL	BALH_0288	-	phosphoribosylformylglycinamidine synthase II
268	 40.10	+1	331807..333240	+	477	118476046	purF	BALH_0289	-	amidophosphoribosyltransferase
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.