IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
136	 39.24	+1	147208..148308	+	366	118475914	-	BALH_0144	-	iron-sulfur cluster assembly/repair protein ApbC
137	 35.76	0	148365..148982	-	205	118475915	gerD	BALH_0145	-	spore germination protein
138	 36.27	0	149122..149733	+	203	118475916	kbaA	BALH_0146	-	kinB signaling pathway activation protein
139	 36.08	0	149838..150602	-	254	118475917	cda	BALH_0147	-	xylanase/chitin deacetylase
140	 29.68	-1	150773..150991	+	72	118475918	-	BALH_0148	-	hypothetical protein
141	 39.55	+1	156963..158120	+	385	118475919	garK	BALH_0150	-	glycerate kinase
142	 37.92	0	158331..159224	+	297	118475920	rocF	BALH_0151	-	arginase
143	 38.69	0	159474..160295	+	273	118475921	-	BALH_0152	-	hypothetical protein
144	 37.76	0	160234..161769	+	511	118475922	-	BALH_0153	-	hypothetical protein
145	 38.68	0	161762..163108	+	448	118475923	glmM	BALH_0154	-	phosphoglucosamine mutase
146	 38.99	0	163593..165395	+	600	118475924	glmS	BALH_0155	-	D-fructose-6-phosphate amidotransferase
147	 29.96	-1	165498..165734	+	78	118475925	tnsA	BALH_0156	-	transposase
148	 32.44	0	165986..166654	+	222	118475926	-	BALH_0157	-	hypothetical protein
149	 35.11	0	166908..167639	+	243	118475927	gntR	BALH_0158	-	GntR family transcriptional regulator
150	 38.91	0	167536..169167	+	543	118475928	gntK	BALH_0159	-	gluconate kinase
151	 38.68	0	169284..170630	+	448	118475929	gntP	BALH_0161	-	gluconate permease
152	 39.22	+1	170895..172304	+	469	118475930	gntZ	BALH_0162	-	6-phosphogluconate dehydrogenase
153	 34.66	0	172647..174611	+	654	118475931	-	BALH_0163	-	prolyl oligopeptidase family protein
154	 39.33	+1	174730..175296	+	188	118475932	-	BALH_0164	-	hypothetical protein
155	 35.09	0	175363..176103	-	246	118475933	-	BALH_0165	-	transposase
156	 33.60	0	176238..176615	-	125	118475934	-	BALH_0166	-	transposase
157	 37.28	0	176688..177194	-	168	118475935	-	BALH_0167	-	hypothetical protein
158	 33.99	0	177435..178349	-	304	118475936	-	BALH_0168	-	hypothetical protein
159	 30.71	-1	178349..178843	-	164	118475937	-	BALH_0169	-	ECF subfamily RNA polymerase sigma factor
160	 34.03	0	178981..180267	-	428	118475938	-	BALH_0170	-	hypothetical protein
161	 37.06	0	180681..181484	+	267	118475939	-	BALH_0171	-	3-ketoacyl-(acyl-carrier-protein) reductase
162	 39.16	+1	181522..182190	-	222	118475940	-	BALH_0172	-	ABC transporter, permease component
163	 36.50	0	182165..183205	-	346	118475941	-	BALH_0173	-	ABC transporter, ATP-binding protein
164	 34.69	0	183218..184030	-	270	118475942	-	BALH_0174	-	ABC transporter, substrate-binding protein
165	 36.02	0	184312..185280	-	322	118475943	-	BALH_0175	-	alcohol dehydrogenase, zinc containing
166	 34.90	0	185366..186130	+	254	118475944	-	BALH_0176	-	hypothetical protein
167	 34.38	0	186242..187678	+	478	118475945	-	BALH_0177	-	oxidoreductase, FAD-binding
168	 35.96	0	187675..188208	+	177	118475946	-	BALH_0178	-	membrane transport protein, multidrug resistance protein
169	 36.86	0	188278..190008	+	576	118475947	-	BALH_0180	-	hypothetical protein
170	 39.49	+1	190136..191386	+	416	118475948	-	BALH_0182	-	Bcr/CflA subfamily drug resistance transporter
171	 34.13	0	191637..192140	+	167	118475949	-	BALH_0183	-	hypothetical protein
172	 35.73	0	192787..193704	+	305	118475950	oppB	BALH_0184	-	oligopeptide ABC transporter, permease component
173	 38.31	0	193721..194725	+	334	118475951	oppC	BALH_0185	-	oligopeptide ABC transporter, permease component
174	 36.89	0	194682..195692	+	336	118475952	oppD	BALH_0186	-	oligopeptide ABC transporter, ATP-binding protein
175	 38.63	0	195689..196462	+	257	118475953	oppF	BALH_0187	-	oligopeptide ABC transporter, ATP-binding protein
176	 32.46	0	196476..198086	+	536	118475954	oppA	BALH_0188	-	oligopeptide transporter, periplasmic-binding protein
177	 31.15	-1	198103..198606	-	167	118475955	-	BALH_0189	-	hypothetical protein
178	 36.22	0	198743..199642	+	299	118475956	-	BALH_0190	-	AraC family transcriptional regulator
179	 33.51	0	199918..200499	+	193	118475957	-	BALH_0191	-	TetR/AcrR family transcriptional regulator
180	 34.36	0	200525..201697	+	390	118475958	-	BALH_0192	-	hypothetical protein
181	 36.38	0	201742..203514	-	590	118475959	oppA	BALH_0194	-	oligopeptide transporter, periplasmic-binding protein
182	 35.41	0	203770..205410	-	546	118475960	oppA	BALH_0195	-	oligopeptide transporter, periplasmic-binding protein
183	 35.25	0	205803..206636	-	277	118475961	-	BALH_0196	-	aldo/keto reductase
184	 40.05	+1	206638..207441	-	267	118475962	proC	BALH_0197	-	pyrroline-5-carboxylate reductase
185	 31.08	-1	207541..208251	+	236	118475963	pnuC	BALH_0198	-	nicotinamide mononucleotide transporter
186	 37.09	0	208319..209170	-	283	118475964	glcU	BALH_0200	-	glucose uptake protein
187	 38.52	0	209472..210146	-	224	118475966	modC	BALH_0202	-	molybdenum ABC transporter, permease component
188	 36.59	0	209923..210168	+	81	118475965	-	BALH_0201	-	hypothetical protein
189	 35.19	0	210152..210958	-	268	118475967	modA	BALH_0203	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
190	 34.39	0	211093..212040	+	315	118475968	-	BALH_0204	-	molybdate-binding protein
191	 35.67	0	212611..213507	-	298	118475969	-	BALH_0205	-	LysR family transcriptional regulator
192	 34.89	0	213545..214573	+	342	118475970	-	BALH_0206	-	DMT family permease
193	 35.48	0	215103..215708	+	201	118475971	plsC	BALH_0207	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
194	 36.71	0	216184..217161	+	325	118475972	-	BALH_0208	-	LacI family transcription regulator
195	 35.13	0	217759..218595	+	278	118475973	-	BALH_0209	-	hypothetical protein
196	 34.15	0	218694..219059	+	121	118475974	-	BALH_0210	-	hypothetical protein
197	 33.57	0	219765..220616	+	283	118475975	-	BALH_0211	-	TatD-related deoxyribonuclease
198	 31.77	-1	220713..222251	+	512	118475976	-	BALH_0212	-	hypothetical protein
199	 32.30	0	222287..223936	-	549	118475977	-	BALH_0213	-	hypothetical protein
200	 38.58	0	224187..224720	+	177	118475978	-	BALH_0214	-	invasion protein LagB
201	 33.45	0	224736..225620	-	294	118475979	-	BALH_0215	-	hypothetical protein
202	 33.33	0	226145..226336	+	63	118475980	-	BALH_0216	-	hypothetical protein
203	 36.73	0	226398..228341	+	647	118475981	-	BALH_0217	-	ABC transporter, ATP-binding protein
204	 34.83	0	229230..230966	+	578	118475982	oppA	BALH_0218	-	oligopeptide transporter, periplasmic-binding protein
205	 32.82	0	231060..232031	+	323	118475983	oppB	BALH_0220	-	oligopeptide ABC transporter, permease component
206	 37.88	0	232044..232967	+	307	118475984	oppC	BALH_0221	-	oligopeptide ABC transporter, permease component
207	 36.90	0	232978..233958	+	326	118475985	oppD	BALH_0222	-	oligopeptide ABC transporter, ATP-binding protein
208	 39.44	+1	233955..234920	+	321	118475986	oppF	BALH_0223	-	oligopeptide ABC transporter, ATP-binding protein
209	 33.65	0	234960..235919	-	319	118475987	-	BALH_0224	-	HAD superfamily hydrolase
210	 36.24	0	237251..238420	+	389	118475988	hppD	BALH_0225	-	4-hydroxyphenylpyruvate dioxygenase
211	 39.69	+1	238484..239443	+	319	118475989	hpcE	BALH_0226	-	fumarylacetoacetate hydrolase
212	 39.59	+1	239400..240581	+	393	118475990	hmgA	BALH_0227	-	homogentisate 1,2-dioxygenase
213	 38.16	0	240798..242228	+	476	118475991	-	BALH_0228	-	amino acid permease
214	 37.73	0	242313..243608	+	431	118475992	-	BALH_0229	-	major facilitator family transporter
215	 36.50	0	243973..245076	+	367	118475993	ddl	BALH_0230	-	D-alanyl-alanine synthetase A
216	 36.53	0	245137..246513	+	458	118475994	murF	BALH_0231	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
217	 41.65	+1	246819..248405	+	528	118475995	deaD	BALH_0232	-	DEAD-box ATP dependent DNA helicase
218	 35.44	0	248421..249464	+	347	118475996	uvsE	BALH_0233	-	putative UV damage endonuclease
219	 36.82	0	249457..250029	-	190	118475997	-	BALH_0234	-	rhomboid family protein
220	 36.11	0	250122..250481	+	119	118475998	acpS	BALH_0235	-	holo-[acyl-carrier protein] synthase
221	 36.73	0	250500..251588	+	362	118475999	-	BALH_0236	-	hypothetical protein
222	 38.46	0	251707..252876	+	389	118476000	alr	BALH_0237	-	alanine racemase
223	 41.67	+1	253186..253473	+	95	118476001	-	BALH_0238	-	hypothetical protein
224	 40.17	+1	253478..253828	+	116	118476002	-	BALH_0239	-	pemK-like protein
225	 36.46	0	253890..256064	+	724	118476003	-	BALH_0240	-	transcription accessory protein
226	 35.05	0	256428..256892	+	154	118476004	-	BALH_0241	-	hypothetical protein
227	 35.40	0	263321..263803	+	160	118476005	-	BALH_0243	-	kinase
228	 35.58	0	263676..264476	+	266	118476006	gcp	BALH_0244	-	O-sialoglycoprotein endopeptidase
229	 35.98	0	264481..264933	+	150	118476007	rimI	BALH_0245	-	SSU ribosomal protein S18P alanine acetyltransferase
230	 40.02	+1	264918..265949	+	343	118476008	gcp	BALH_0246	-	O-sialoglycoprotein endopeptidase
231	 35.71	0	266370..268346	-	658	118476009	-	BALH_0247	-	ABC transporter, ATP-binding protein
232	 35.40	0	268480..269109	+	209	118476010	-	BALH_0248	-	redox-sensing transcriptional repressor Rex
233	 35.60	0	269327..270076	-	249	118476011	-	BALH_0249	-	CAAX amino protease
234	 39.30	+1	270478..270762	+	94	162382787	groES	BALH_0250	-	co-chaperonin GroES
235	 41.77	+1	270801..272435	+	544	118476013	groEL	BALH_0251	-	chaperonin GroEL
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.