IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1738	 37.35	0	1992718..1994187	+	489	118477516	-	BALH_1841	-	aldehyde dehydrogenase
1739	 35.66	0	1994316..1995089	+	257	118477517	pheD	BALH_1842	-	2-hydroxypenta-2,4-dienoate hydratase
1740	 37.67	0	1995120..1996019	+	299	118477518	-	BALH_1843	-	acetaldehyde dehydrogenase
1741	 39.38	+1	1996006..1997031	+	341	118477519	-	BALH_1844	-	4-hydroxy-2-ketovalerate aldolase
1742	 35.87	0	1997035..1997823	+	262	118477520	-	BALH_1845	-	4-oxalocrotonate decarboxylase
1743	 34.87	0	1997845..1998039	+	64	118477521	-	BALH_1846	-	4-oxalocrotonate tautomerase
1744	 36.22	0	1998128..1998751	+	207	118477522	-	BALH_1847	-	phosphoglycerate mutase
1745	 35.91	0	1998758..1999534	+	258	118477523	-	BALH_1848	-	HAD superfamily hydrolase
1746	 33.12	0	1999542..2000003	-	153	118477524	-	BALH_1849	-	hypothetical protein
1747	 35.53	0	2000124..2001350	+	408	118477525	-	BALH_1850	-	alanine racemase
1748	 32.21	-1	2001371..2002084	-	237	118477526	-	BALH_1851	-	methyltransferase
1749	 34.29	0	2002077..2003015	-	312	118477527	-	BALH_1852	-	acetyltransferase
1750	 36.86	0	2002988..2003866	-	292	118477528	-	BALH_1853	-	hypothetical protein
1751	 34.98	0	2004250..2005461	+	403	118477529	-	BALH_1854	-	glycosyltransferase
1752	 34.40	0	2005629..2006474	+	281	118477530	-	BALH_1855	-	hypothetical protein
1753	 36.19	0	2006521..2007921	-	466	118477531	-	BALH_1856	-	GntR family transcriptional regulator
1754	 33.10	0	2008052..2008474	+	140	118477532	-	BALH_1857	-	acetyltransferase
1755	 30.58	-1	2008725..2009306	-	193	118477533	-	BALH_1858	-	hypothetical protein
1756	 37.39	0	2009443..2010009	+	188	118477534	-	BALH_1859	-	acetyltransferase
1757	 30.66	-1	2010016..2010576	+	186	118477535	-	BALH_1860	-	hypothetical protein
1758	 34.77	0	2010573..2011058	+	161	118477536	-	BALH_1861	-	acetyltransferase
1759	 35.23	0	2011071..2011439	+	122	118477537	-	BALH_1862	-	hypothetical protein
1760	 33.33	0	2011243..2011986	-	247	118477538	-	BALH_1863	-	hypothetical protein
1761	 28.65	-2	2013800..2013991	+	63	118477539	-	BALH_1864	-	hypothetical protein
1762	 32.07	-1	2014317..2014553	+	78	118477540	-	BALH_1865	-	hypothetical protein
1763	 40.14	+1	2016910..2017335	+	141	118477541	-	BALH_1866	-	hypothetical protein
1764	 33.33	0	2017424..2018272	+	282	118477542	-	BALH_1867	-	hypothetical protein
1765	 31.15	-1	2018279..2018644	+	121	118477543	-	BALH_1868	-	hypothetical protein
1766	 35.94	0	2018956..2019300	-	114	118477544	-	BALH_1869	-	hypothetical protein
1767	 37.04	0	2019482..2020210	+	242	118477545	-	BALH_1870	-	methyltransferase
1768	 38.36	0	2020211..2021962	+	583	118477546	-	BALH_1871	-	formate--tetrahydrofolate ligase
1769	 32.78	0	2022041..2022580	+	179	118477547	-	BALH_1872	-	hypothetical protein
1770	 37.26	0	2022600..2023769	+	389	118477548	deaD	BALH_1873	-	DEAD-box ATP dependent DNA helicase
1771	 31.54	-1	2023912..2024358	+	148	118477549	-	BALH_1874	-	sugar phosphate isomerase/epimerase
1772	 33.59	0	2024414..2024797	+	127	118477550	-	BALH_1875	-	lactoylglutathione lyase
1773	 33.80	0	2024843..2025490	-	215	118477551	-	BALH_1876	-	hypothetical protein
1774	 39.21	+1	2025511..2026497	-	328	118477552	-	BALH_1877	-	quinone oxidoreductase
1775	 31.35	-1	2026676..2027281	+	201	118477553	-	BALH_1878	-	RNA polymerase sigma factor
1776	 36.86	0	2027278..2027958	+	226	118477554	-	BALH_1879	-	hypothetical protein
1777	 34.56	0	2028537..2029517	-	326	118477555	-	BALH_1880	-	Zn-dependent hydrolase
1778	 36.47	0	2030014..2030523	+	169	118477556	-	BALH_1881	-	glutathione peroxidase
1779	 34.10	0	2030607..2032835	-	742	118477557	-	BALH_1882	-	transglutaminase superfamily protease
1780	 36.05	0	2032832..2034046	-	404	118477558	-	BALH_1883	-	hypothetical protein
1781	 37.07	0	2034046..2035008	-	320	118477559	-	BALH_1884	-	magnesium chelatase
1782	 28.07	-2	2035398..2035739	-	113	118477560	-	BALH_1885	-	hypothetical protein
1783	 24.35	-2	2035856..2036356	-	166	118477561	-	BALH_1886	-	hypothetical protein
1784	 40.37	+1	2036826..2040518	+	1230	118477562	-	BALH_1887	-	respiratory nitrate reductase alpha subunit apoprotein
1785	 38.82	0	2040508..2041983	+	491	118477563	-	BALH_1889	-	respiratory nitrate reductase beta subunit
1786	 34.07	0	2042003..2042542	+	179	118477564	-	BALH_1890	-	respiratory nitrate reductase chaperone NarJ
1787	 36.08	0	2042521..2043249	+	242	118477565	-	BALH_1891	-	respiratory nitrate reductase gamma subunit
1788	 31.94	-1	2043343..2044062	-	239	118477566	-	BALH_1892	-	Crp/FNR family transcriptional regulator
1789	 36.00	0	2044314..2045327	+	337	118477567	moaA	BALH_1893	-	GTP cyclohydrolase subunit MoaA
1790	 38.07	0	2045345..2046358	+	337	118477568	moeB	BALH_1894	-	thiamine/molybdopterin biosynthesis MoeB-like protein
1791	 40.53	+1	2046401..2047123	+	240	118477569	moeA	BALH_1895	-	molybdopterin biosynthesis protein
1792	 38.27	0	2047205..2047690	+	161	118477570	moeA	BALH_1896	-	molybdenum cofactor biosynthesis protein, C-terminal region
1793	 40.34	+1	2047735..2048205	+	156	118477571	moaE	BALH_1898	-	molybdopterin converting factor, subunit 2
1794	 36.75	0	2048202..2048435	+	77	118477572	moaD	BALH_1899	-	molybdopterin synthase subunit MoaD
1795	 34.27	0	2048516..2049685	+	389	118477573	narK	BALH_1901	-	nitrite extrusion protein
1796	 30.72	-1	2050038..2050955	+	305	118477574	-	BALH_1902	-	hypothetical protein
1797	 36.04	0	2051176..2051655	-	159	118477575	-	BALH_1903	-	precorrin-2 dehydrogenase
1798	 35.72	0	2051642..2052352	-	236	118477576	-	BALH_1904	-	hypothetical protein
1799	 36.18	0	2052349..2053788	-	479	118477577	-	BALH_1905	-	bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase
1800	 36.70	0	2053836..2054162	-	108	118477578	-	BALH_1906	-	assimilatory nitrite reductase (NAD(P)H) small subunit
1801	 38.07	0	2054169..2056574	-	801	118477579	nirB	BALH_1907	-	assimilatory nitrite reductase (NAD(P)H) large subunit precursor
1802	 31.92	-1	2056784..2057491	-	235	118477580	-	BALH_1908	-	cell division and morphogenesis-related protein
1803	 31.22	-1	2058088..2058324	+	78	118477581	-	BALH_1909	-	hypothetical protein
1804	 31.86	-1	2058420..2059301	-	293	118477582	-	BALH_1910	-	N-acetyltransferase family protein
1805	 36.14	0	2059810..2061411	+	533	118477583	-	BALH_1911	-	hypothetical protein
1806	 38.41	0	2061841..2062116	+	91	118477584	-	BALH_1912	-	stage V sporulation protein S
1807	 32.14	-1	2062211..2062711	-	166	118477585	-	BALH_1913	-	hypothetical protein
1808	 32.85	0	2062781..2062987	+	68	118477586	-	BALH_1914	-	truncated phage-like protein
1809	 30.82	-1	2063305..2063622	-	105	118477587	-	BALH_1915	-	hypothetical protein
1810	 30.21	-1	2063598..2063789	+	63	118477588	-	BALH_1916	-	hypothetical protein
1811	 35.02	0	2063865..2064635	+	256	118477589	-	BALH_1917	-	hypothetical protein
1812	 36.14	0	2064590..2064838	+	82	118477590	-	BALH_1918	-	hypothetical protein
1813	 30.49	-1	2064823..2065068	+	81	118477591	-	BALH_1919	-	hypothetical protein
1814	 38.04	0	2065637..2065912	+	91	118477592	-	BALH_1920	-	N-acetylmuramoyl-L-alanine amidase
1815	 34.12	0	2065937..2066191	+	84	118477593	-	BALH_1921	-	hypothetical protein
1816	 26.33	-2	2066250..2066663	-	137	118477594	-	BALH_1922	-	hypothetical protein
1817	 30.13	-1	2066798..2067109	-	103	118477595	-	BALH_1923	-	hypothetical protein
1818	 38.59	0	2067126..2068058	-	310	118477596	-	BALH_1924	-	hypothetical protein
1819	 38.25	0	2068342..2069154	-	270	118477597	-	BALH_1925	-	hypothetical protein
1820	 35.19	0	2069213..2069860	+	215	118477598	-	BALH_1926	-	HD superfamily hydrolase
1821	 36.79	0	2069842..2071752	+	636	118477599	-	BALH_1927	-	ABC transporter, ATP-binding protein
1822	 37.84	0	2071828..2072559	+	243	118477600	-	BALH_1928	-	hypothetical protein
1823	 32.94	0	2072665..2072919	+	84	118477601	-	BALH_1929	-	hypothetical protein
1824	 32.03	-1	2073442..2074056	-	204	118477602	-	BALH_1930	-	TetR family transcriptional regulator
1825	 35.19	0	2074134..2075267	-	377	118477603	-	BALH_1931	-	hypothetical protein
1826	 38.56	0	2075526..2076653	+	375	118477604	-	BALH_1932	-	HEAT repeat-containing protein
1827	 33.85	0	2076657..2077040	+	127	118477605	-	BALH_1933	-	hypothetical protein
1828	 38.62	0	2077124..2077558	+	144	118477606	-	BALH_1934	-	hypothetical protein
1829	 37.71	0	2077608..2078384	+	258	118477607	-	BALH_1935	-	protein-L-isoD(D-D) O-methyltransferase
1830	 35.82	0	2078685..2080373	+	562	118477608	argS	BALH_1936	-	arginyl-tRNA synthetase
1831	 32.90	0	2080507..2081427	+	306	118477609	-	BALH_1937	-	hypothetical protein
1832	 33.46	0	2081421..2082215	+	264	118477610	-	BALH_1938	-	hypothetical protein
1833	 33.71	0	2082552..2086781	+	1409	118477611	-	BALH_1939	-	TPR repeat-containing protein
1834	 37.69	0	2087173..2090274	+	1033	118477612	ileS	BALH_1940	-	isoleucyl-tRNA synthetase
1835	 38.31	0	2090551..2092116	+	521	118477613	-	BALH_1941	-	bacillolysin
1836	 31.94	-1	2092198..2092701	-	167	118477614	-	BALH_1942	-	hypothetical protein
1837	 32.82	0	2092747..2093523	+	258	118477615	murF	BALH_1943	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.