IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1698	 39.21	+1	1954896..1955933	-	345	118477476	-	BALH_1798	-	NADPH dehydrogenase NamA
1699	 37.53	0	1956068..1956520	+	150	118477477	-	BALH_1799	-	methylated-DNA--[protein]-cysteine S-methyltransferase (6-O-methylguanine-DNA methyltransferase)
1700	 35.90	0	1956528..1957541	+	337	118477478	-	BALH_1800	-	hypothetical protein
1701	 34.53	0	1957603..1959279	+	558	118477479	oppA	BALH_1801	-	oligopeptide transporter, periplasmic-binding protein
1702	 31.41	-1	1959338..1959754	+	138	118477480	-	BALH_1802	-	fosfomycin resistance protein FosB
1703	 37.18	0	1959767..1960312	+	181	118477481	-	BALH_1803	-	short chain dehydrogenase
1704	 38.03	0	1960319..1960936	+	205	118477482	-	BALH_1804	-	phosphatase PhoE
1705	 37.38	0	1960982..1961524	-	180	118477483	-	BALH_1806	-	exosporium protein B
1706	 31.53	-1	1961676..1962782	+	368	118477484	-	BALH_1807	-	spore coat protein H
1707	 34.79	0	1962888..1963505	+	205	118477485	-	BALH_1808	-	MutT/NUDIX family hydrolase
1708	 35.82	0	1963610..1964212	+	200	118477486	-	BALH_1809	-	DedA family protein
1709	 36.01	0	1964307..1965689	+	460	118477487	-	BALH_1810	-	export protein for polysaccharides and teichoic acids
1710	 29.09	-1	1965874..1966815	+	313	118477488	-	BALH_1811	-	magnesium and cobalt transport protein
1711	 36.79	0	1967014..1967910	+	298	118477489	-	BALH_1813	-	permease
1712	 33.79	0	1967914..1968783	+	289	118477490	-	BALH_1814	-	hypothetical protein
1713	 39.15	+1	1968970..1969485	+	171	118477491	-	BALH_1815	-	cytosolic long-chain acyl-CoA thioester hydrolase family protein
1714	 34.18	0	1969859..1971043	+	394	118477492	cls	BALH_1816	-	cardiolipin synthetase
1715	 33.33	0	1971074..1971532	+	152	118477493	-	BALH_1817	-	spore coat-related protein
1716	 33.80	0	1971686..1971898	+	70	118477494	-	BALH_1818	-	hypothetical protein
1717	 34.83	0	1971953..1972621	+	222	118477495	-	BALH_1819	-	oxidoreductase
1718	 34.48	0	1973130..1974437	-	435	118477496	-	BALH_1820	-	hemolysin-like protein
1719	 32.18	-1	1974646..1975515	-	289	118477497	-	BALH_1821	-	hypothetical protein
1720	 30.56	-1	1975772..1976419	+	215	118477498	-	BALH_1822	-	hemolysin-like protein
1721	 34.96	0	1976843..1978195	+	450	118477499	brnQ	BALH_1824	-	branched-chain amino acid transport system carrier protein
1722	 36.06	0	1978262..1978591	+	109	118477500	-	BALH_1825	-	protein secretion chaperonin
1723	 33.90	0	1978609..1979136	+	175	118477501	-	BALH_1826	-	hypothetical protein
1724	 35.58	0	1979805..1980959	+	384	118477502	-	BALH_1827	-	stage II sporulation protein P
1725	 33.18	0	1981024..1981680	+	218	118477503	-	BALH_1828	-	acetyltransferase
1726	 39.27	+1	1981692..1982432	+	246	118477504	-	BALH_1829	-	M15B family D-Ala-D-Ala carboxypeptidase VanY
1727	 36.02	0	1982456..1982902	+	148	118477505	-	BALH_1830	-	MutT/NUDIX family protein
1728	 36.38	0	1983051..1984562	+	503	118477506	-	BALH_1831	-	amidase
1729	 34.80	0	1984613..1985842	-	409	118477507	-	BALH_1832	-	permease
1730	 35.17	0	1986100..1986534	+	144	118477508	-	BALH_1833	-	hypothetical protein
1731	 37.15	0	1986537..1987505	+	322	118477509	-	BALH_1834	-	SPFH domain-containing protein/band 7 family protein
1732	 37.22	0	1987672..1989216	+	514	118477510	-	BALH_1835	-	4-hydroxyphenylacetate-3-hydroxylase
1733	 36.91	0	1989331..1990113	+	260	118477511	-	BALH_1836	-	IclR family transcriptional regulator
1734	 33.68	0	1990094..1990678	+	194	118477512	-	BALH_1837	-	riboflavin biosynthesis protein
1735	 37.22	0	1990708..1991247	+	179	118477513	-	BALH_1838	-	3-hydroxyanthranilate 3,4-dioxygenase
1736	 38.34	0	1991232..1992269	+	345	118477514	-	BALH_1839	-	2-amino-3-carboxymuconate-6-semialdehyde decarboxylase
1737	 35.08	0	1992247..1992705	+	152	118477515	-	BALH_1840	-	endoribonuclease L-PSP
1738	 37.35	0	1992718..1994187	+	489	118477516	-	BALH_1841	-	aldehyde dehydrogenase
1739	 35.66	0	1994316..1995089	+	257	118477517	pheD	BALH_1842	-	2-hydroxypenta-2,4-dienoate hydratase
1740	 37.67	0	1995120..1996019	+	299	118477518	-	BALH_1843	-	acetaldehyde dehydrogenase
1741	 39.38	+1	1996006..1997031	+	341	118477519	-	BALH_1844	-	4-hydroxy-2-ketovalerate aldolase
1742	 35.87	0	1997035..1997823	+	262	118477520	-	BALH_1845	-	4-oxalocrotonate decarboxylase
1743	 34.87	0	1997845..1998039	+	64	118477521	-	BALH_1846	-	4-oxalocrotonate tautomerase
1744	 36.22	0	1998128..1998751	+	207	118477522	-	BALH_1847	-	phosphoglycerate mutase
1745	 35.91	0	1998758..1999534	+	258	118477523	-	BALH_1848	-	HAD superfamily hydrolase
1746	 33.12	0	1999542..2000003	-	153	118477524	-	BALH_1849	-	hypothetical protein
1747	 35.53	0	2000124..2001350	+	408	118477525	-	BALH_1850	-	alanine racemase
1748	 32.21	-1	2001371..2002084	-	237	118477526	-	BALH_1851	-	methyltransferase
1749	 34.29	0	2002077..2003015	-	312	118477527	-	BALH_1852	-	acetyltransferase
1750	 36.86	0	2002988..2003866	-	292	118477528	-	BALH_1853	-	hypothetical protein
1751	 34.98	0	2004250..2005461	+	403	118477529	-	BALH_1854	-	glycosyltransferase
1752	 34.40	0	2005629..2006474	+	281	118477530	-	BALH_1855	-	hypothetical protein
1753	 36.19	0	2006521..2007921	-	466	118477531	-	BALH_1856	-	GntR family transcriptional regulator
1754	 33.10	0	2008052..2008474	+	140	118477532	-	BALH_1857	-	acetyltransferase
1755	 30.58	-1	2008725..2009306	-	193	118477533	-	BALH_1858	-	hypothetical protein
1756	 37.39	0	2009443..2010009	+	188	118477534	-	BALH_1859	-	acetyltransferase
1757	 30.66	-1	2010016..2010576	+	186	118477535	-	BALH_1860	-	hypothetical protein
1758	 34.77	0	2010573..2011058	+	161	118477536	-	BALH_1861	-	acetyltransferase
1759	 35.23	0	2011071..2011439	+	122	118477537	-	BALH_1862	-	hypothetical protein
1760	 33.33	0	2011243..2011986	-	247	118477538	-	BALH_1863	-	hypothetical protein
1761	 28.65	-2	2013800..2013991	+	63	118477539	-	BALH_1864	-	hypothetical protein
1762	 32.07	-1	2014317..2014553	+	78	118477540	-	BALH_1865	-	hypothetical protein
1763	 40.14	+1	2016910..2017335	+	141	118477541	-	BALH_1866	-	hypothetical protein
1764	 33.33	0	2017424..2018272	+	282	118477542	-	BALH_1867	-	hypothetical protein
1765	 31.15	-1	2018279..2018644	+	121	118477543	-	BALH_1868	-	hypothetical protein
1766	 35.94	0	2018956..2019300	-	114	118477544	-	BALH_1869	-	hypothetical protein
1767	 37.04	0	2019482..2020210	+	242	118477545	-	BALH_1870	-	methyltransferase
1768	 38.36	0	2020211..2021962	+	583	118477546	-	BALH_1871	-	formate--tetrahydrofolate ligase
1769	 32.78	0	2022041..2022580	+	179	118477547	-	BALH_1872	-	hypothetical protein
1770	 37.26	0	2022600..2023769	+	389	118477548	deaD	BALH_1873	-	DEAD-box ATP dependent DNA helicase
1771	 31.54	-1	2023912..2024358	+	148	118477549	-	BALH_1874	-	sugar phosphate isomerase/epimerase
1772	 33.59	0	2024414..2024797	+	127	118477550	-	BALH_1875	-	lactoylglutathione lyase
1773	 33.80	0	2024843..2025490	-	215	118477551	-	BALH_1876	-	hypothetical protein
1774	 39.21	+1	2025511..2026497	-	328	118477552	-	BALH_1877	-	quinone oxidoreductase
1775	 31.35	-1	2026676..2027281	+	201	118477553	-	BALH_1878	-	RNA polymerase sigma factor
1776	 36.86	0	2027278..2027958	+	226	118477554	-	BALH_1879	-	hypothetical protein
1777	 34.56	0	2028537..2029517	-	326	118477555	-	BALH_1880	-	Zn-dependent hydrolase
1778	 36.47	0	2030014..2030523	+	169	118477556	-	BALH_1881	-	glutathione peroxidase
1779	 34.10	0	2030607..2032835	-	742	118477557	-	BALH_1882	-	transglutaminase superfamily protease
1780	 36.05	0	2032832..2034046	-	404	118477558	-	BALH_1883	-	hypothetical protein
1781	 37.07	0	2034046..2035008	-	320	118477559	-	BALH_1884	-	magnesium chelatase
1782	 28.07	-2	2035398..2035739	-	113	118477560	-	BALH_1885	-	hypothetical protein
1783	 24.35	-2	2035856..2036356	-	166	118477561	-	BALH_1886	-	hypothetical protein
1784	 40.37	+1	2036826..2040518	+	1230	118477562	-	BALH_1887	-	respiratory nitrate reductase alpha subunit apoprotein
1785	 38.82	0	2040508..2041983	+	491	118477563	-	BALH_1889	-	respiratory nitrate reductase beta subunit
1786	 34.07	0	2042003..2042542	+	179	118477564	-	BALH_1890	-	respiratory nitrate reductase chaperone NarJ
1787	 36.08	0	2042521..2043249	+	242	118477565	-	BALH_1891	-	respiratory nitrate reductase gamma subunit
1788	 31.94	-1	2043343..2044062	-	239	118477566	-	BALH_1892	-	Crp/FNR family transcriptional regulator
1789	 36.00	0	2044314..2045327	+	337	118477567	moaA	BALH_1893	-	GTP cyclohydrolase subunit MoaA
1790	 38.07	0	2045345..2046358	+	337	118477568	moeB	BALH_1894	-	thiamine/molybdopterin biosynthesis MoeB-like protein
1791	 40.53	+1	2046401..2047123	+	240	118477569	moeA	BALH_1895	-	molybdopterin biosynthesis protein
1792	 38.27	0	2047205..2047690	+	161	118477570	moeA	BALH_1896	-	molybdenum cofactor biosynthesis protein, C-terminal region
1793	 40.34	+1	2047735..2048205	+	156	118477571	moaE	BALH_1898	-	molybdopterin converting factor, subunit 2
1794	 36.75	0	2048202..2048435	+	77	118477572	moaD	BALH_1899	-	molybdopterin synthase subunit MoaD
1795	 34.27	0	2048516..2049685	+	389	118477573	narK	BALH_1901	-	nitrite extrusion protein
1796	 30.72	-1	2050038..2050955	+	305	118477574	-	BALH_1902	-	hypothetical protein
1797	 36.04	0	2051176..2051655	-	159	118477575	-	BALH_1903	-	precorrin-2 dehydrogenase
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.