IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1657	 35.09	0	1914338..1915648	+	436	118477435	-	BALH_1755	-	acyl-CoA synthetase
1658	 33.70	0	1915645..1915920	+	91	118477436	-	BALH_1756	-	acyl carrier protein
1659	 33.33	0	1915932..1916927	+	331	118477437	-	BALH_1757	-	hypothetical protein
1660	 33.45	0	1916965..1917807	+	280	118477438	-	BALH_1758	-	hypothetical protein
1661	 41.78	+1	1917927..1918139	+	70	118477439	sspA	BALH_1759	-	small, acid-soluble spore protein
1662	 36.48	0	1918306..1919610	+	434	118477440	-	BALH_1760	-	multidrug resistance protein
1663	 35.60	0	1919664..1920281	-	205	118477441	-	BALH_1761	-	amino acid transporter LysE
1664	 33.82	0	1920394..1921839	+	481	118477442	-	BALH_1762	-	GntR family transcriptional regulator
1665	 36.22	0	1922128..1923096	-	322	118477443	-	BALH_1763	-	phospholipase
1666	 34.26	0	1923539..1924291	+	250	118477444	-	BALH_1764	-	hypothetical protein
1667	 34.88	0	1924438..1925598	+	386	118477445	-	BALH_1765	-	murein endopeptidase
1668	 37.74	0	1925872..1926393	+	173	118477446	-	BALH_1766	-	MutT/NUDIX family protein
1669	 39.07	+1	1926440..1927258	-	272	118477447	nadE	BALH_1767	-	NAD synthetase
1670	 32.54	0	1927530..1929410	+	626	118477448	-	BALH_1769	-	ABC transporter, permease component
1671	 29.94	-1	1929491..1929814	+	107	118477449	-	BALH_1770	-	AbrB family transcriptional regulator
1672	 38.38	0	1930089..1931039	+	316	118477450	-	BALH_1771	-	IspA peptidase
1673	 34.63	0	1931080..1931388	-	102	118477451	-	BALH_1772	-	ArsR family transcriptional regulator
1674	 34.29	0	1931496..1932431	+	311	118477452	-	BALH_1773	-	aldo/keto reductase family oxidoreductase
1675	 34.44	0	1932480..1933655	+	391	118477453	-	BALH_1774	-	multidrug resistance protein
1676	 31.65	-1	1933844..1934140	-	98	118477454	-	BALH_1775	-	hypothetical protein
1677	 38.38	0	1934153..1934509	-	118	118477455	-	BALH_1776	-	hypothetical protein
1678	 36.87	0	1934688..1935224	+	178	118477456	-	BALH_1777	-	hypothetical protein
1679	 37.17	0	1935359..1936453	+	364	118477457	-	BALH_1778	-	ribosome-associated GTPase
1680	 34.88	0	1936631..1938640	+	669	118477458	mcpA	BALH_1779	-	methyl-accepting chemotaxis protein
1681	 34.42	0	1939398..1939766	+	122	118477459	-	BALH_1780	-	hypothetical protein
1682	 35.54	0	1939801..1940841	-	346	118477460	-	BALH_1782	-	hypothetical protein
1683	 36.13	0	1941062..1941526	+	154	118477461	-	BALH_1783	-	non-specific DNA-binding protein, Dps-like
1684	 31.36	-1	1941633..1942088	+	151	118477462	-	BALH_1784	-	hypothetical protein
1685	 31.75	-1	1942313..1943257	+	314	118477463	-	BALH_1785	-	hypothetical protein
1686	 38.52	0	1943303..1944304	-	333	118477464	-	BALH_1786	-	luciferase-like monooxygenase
1687	 28.65	-2	1944410..1944601	-	63	118477465	-	BALH_1787	-	hypothetical protein
1688	 36.75	0	1944779..1946242	+	487	118477466	-	BALH_1788	-	amine oxidase, flavin-containing
1689	 37.54	0	1946318..1946911	+	197	118477467	-	BALH_1789	-	ribosomal-protein-serine acetyltransferase
1690	 38.43	0	1946936..1947838	-	300	118477468	-	BALH_1790	-	aldo/keto reductase family oxidoreductase
1691	 33.65	0	1947994..1948953	+	319	118477469	-	BALH_1791	-	cobalamin synthesis protein
1692	 36.52	0	1949050..1949520	-	156	118477470	bltD	BALH_1792	-	spermine/spermidine acetyltransferase
1693	 30.26	-1	1949975..1950364	-	129	118477471	-	BALH_1793	-	hypothetical protein
1694	 32.37	0	1950451..1950867	-	138	118477472	-	BALH_1794	-	hypothetical protein
1695	 37.09	0	1950878..1952419	-	513	118477473	-	BALH_1795	-	hypothetical protein
1696	 32.84	0	1952724..1953737	-	337	118477474	-	BALH_1796	-	high-affinity zinc uptake system periplasmic-binding protein
1697	 34.70	0	1954207..1954866	+	219	118477475	-	BALH_1797	-	oxidoreductase
1698	 39.21	+1	1954896..1955933	-	345	118477476	-	BALH_1798	-	NADPH dehydrogenase NamA
1699	 37.53	0	1956068..1956520	+	150	118477477	-	BALH_1799	-	methylated-DNA--[protein]-cysteine S-methyltransferase (6-O-methylguanine-DNA methyltransferase)
1700	 35.90	0	1956528..1957541	+	337	118477478	-	BALH_1800	-	hypothetical protein
1701	 34.53	0	1957603..1959279	+	558	118477479	oppA	BALH_1801	-	oligopeptide transporter, periplasmic-binding protein
1702	 31.41	-1	1959338..1959754	+	138	118477480	-	BALH_1802	-	fosfomycin resistance protein FosB
1703	 37.18	0	1959767..1960312	+	181	118477481	-	BALH_1803	-	short chain dehydrogenase
1704	 38.03	0	1960319..1960936	+	205	118477482	-	BALH_1804	-	phosphatase PhoE
1705	 37.38	0	1960982..1961524	-	180	118477483	-	BALH_1806	-	exosporium protein B
1706	 31.53	-1	1961676..1962782	+	368	118477484	-	BALH_1807	-	spore coat protein H
1707	 34.79	0	1962888..1963505	+	205	118477485	-	BALH_1808	-	MutT/NUDIX family hydrolase
1708	 35.82	0	1963610..1964212	+	200	118477486	-	BALH_1809	-	DedA family protein
1709	 36.01	0	1964307..1965689	+	460	118477487	-	BALH_1810	-	export protein for polysaccharides and teichoic acids
1710	 29.09	-1	1965874..1966815	+	313	118477488	-	BALH_1811	-	magnesium and cobalt transport protein
1711	 36.79	0	1967014..1967910	+	298	118477489	-	BALH_1813	-	permease
1712	 33.79	0	1967914..1968783	+	289	118477490	-	BALH_1814	-	hypothetical protein
1713	 39.15	+1	1968970..1969485	+	171	118477491	-	BALH_1815	-	cytosolic long-chain acyl-CoA thioester hydrolase family protein
1714	 34.18	0	1969859..1971043	+	394	118477492	cls	BALH_1816	-	cardiolipin synthetase
1715	 33.33	0	1971074..1971532	+	152	118477493	-	BALH_1817	-	spore coat-related protein
1716	 33.80	0	1971686..1971898	+	70	118477494	-	BALH_1818	-	hypothetical protein
1717	 34.83	0	1971953..1972621	+	222	118477495	-	BALH_1819	-	oxidoreductase
1718	 34.48	0	1973130..1974437	-	435	118477496	-	BALH_1820	-	hemolysin-like protein
1719	 32.18	-1	1974646..1975515	-	289	118477497	-	BALH_1821	-	hypothetical protein
1720	 30.56	-1	1975772..1976419	+	215	118477498	-	BALH_1822	-	hemolysin-like protein
1721	 34.96	0	1976843..1978195	+	450	118477499	brnQ	BALH_1824	-	branched-chain amino acid transport system carrier protein
1722	 36.06	0	1978262..1978591	+	109	118477500	-	BALH_1825	-	protein secretion chaperonin
1723	 33.90	0	1978609..1979136	+	175	118477501	-	BALH_1826	-	hypothetical protein
1724	 35.58	0	1979805..1980959	+	384	118477502	-	BALH_1827	-	stage II sporulation protein P
1725	 33.18	0	1981024..1981680	+	218	118477503	-	BALH_1828	-	acetyltransferase
1726	 39.27	+1	1981692..1982432	+	246	118477504	-	BALH_1829	-	M15B family D-Ala-D-Ala carboxypeptidase VanY
1727	 36.02	0	1982456..1982902	+	148	118477505	-	BALH_1830	-	MutT/NUDIX family protein
1728	 36.38	0	1983051..1984562	+	503	118477506	-	BALH_1831	-	amidase
1729	 34.80	0	1984613..1985842	-	409	118477507	-	BALH_1832	-	permease
1730	 35.17	0	1986100..1986534	+	144	118477508	-	BALH_1833	-	hypothetical protein
1731	 37.15	0	1986537..1987505	+	322	118477509	-	BALH_1834	-	SPFH domain-containing protein/band 7 family protein
1732	 37.22	0	1987672..1989216	+	514	118477510	-	BALH_1835	-	4-hydroxyphenylacetate-3-hydroxylase
1733	 36.91	0	1989331..1990113	+	260	118477511	-	BALH_1836	-	IclR family transcriptional regulator
1734	 33.68	0	1990094..1990678	+	194	118477512	-	BALH_1837	-	riboflavin biosynthesis protein
1735	 37.22	0	1990708..1991247	+	179	118477513	-	BALH_1838	-	3-hydroxyanthranilate 3,4-dioxygenase
1736	 38.34	0	1991232..1992269	+	345	118477514	-	BALH_1839	-	2-amino-3-carboxymuconate-6-semialdehyde decarboxylase
1737	 35.08	0	1992247..1992705	+	152	118477515	-	BALH_1840	-	endoribonuclease L-PSP
1738	 37.35	0	1992718..1994187	+	489	118477516	-	BALH_1841	-	aldehyde dehydrogenase
1739	 35.66	0	1994316..1995089	+	257	118477517	pheD	BALH_1842	-	2-hydroxypenta-2,4-dienoate hydratase
1740	 37.67	0	1995120..1996019	+	299	118477518	-	BALH_1843	-	acetaldehyde dehydrogenase
1741	 39.38	+1	1996006..1997031	+	341	118477519	-	BALH_1844	-	4-hydroxy-2-ketovalerate aldolase
1742	 35.87	0	1997035..1997823	+	262	118477520	-	BALH_1845	-	4-oxalocrotonate decarboxylase
1743	 34.87	0	1997845..1998039	+	64	118477521	-	BALH_1846	-	4-oxalocrotonate tautomerase
1744	 36.22	0	1998128..1998751	+	207	118477522	-	BALH_1847	-	phosphoglycerate mutase
1745	 35.91	0	1998758..1999534	+	258	118477523	-	BALH_1848	-	HAD superfamily hydrolase
1746	 33.12	0	1999542..2000003	-	153	118477524	-	BALH_1849	-	hypothetical protein
1747	 35.53	0	2000124..2001350	+	408	118477525	-	BALH_1850	-	alanine racemase
1748	 32.21	-1	2001371..2002084	-	237	118477526	-	BALH_1851	-	methyltransferase
1749	 34.29	0	2002077..2003015	-	312	118477527	-	BALH_1852	-	acetyltransferase
1750	 36.86	0	2002988..2003866	-	292	118477528	-	BALH_1853	-	hypothetical protein
1751	 34.98	0	2004250..2005461	+	403	118477529	-	BALH_1854	-	glycosyltransferase
1752	 34.40	0	2005629..2006474	+	281	118477530	-	BALH_1855	-	hypothetical protein
1753	 36.19	0	2006521..2007921	-	466	118477531	-	BALH_1856	-	GntR family transcriptional regulator
1754	 33.10	0	2008052..2008474	+	140	118477532	-	BALH_1857	-	acetyltransferase
1755	 30.58	-1	2008725..2009306	-	193	118477533	-	BALH_1858	-	hypothetical protein
1756	 37.39	0	2009443..2010009	+	188	118477534	-	BALH_1859	-	acetyltransferase
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.