IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1467	 37.87	0	1696594..1697982	+	462	118477245	fumC	BALH_1553	-	fumarate hydratase
1468	 32.69	0	1699171..1699944	+	257	118477246	-	BALH_1554	-	hypothetical protein
1469	 36.17	0	1700043..1701452	+	469	118477247	-	BALH_1556	-	Na+ driven multidrug efflux pump
1470	 33.75	0	1701508..1702227	-	239	118477248	-	BALH_1557	-	peptidase E
1471	 31.00	-1	1702570..1702998	+	142	118477249	-	BALH_1558	-	hypothetical protein
1472	 33.09	0	1703106..1703519	+	137	118477250	-	BALH_1559	-	hypothetical protein
1473	 32.10	-1	1703524..1704336	+	270	118477251	-	BALH_1560	-	cell surface protein
1474	 36.13	0	1704390..1705103	+	237	118477252	-	BALH_1562	-	cytochrome c-type biogenesis protein
1475	 35.14	0	1705122..1705676	+	184	118477253	-	BALH_1563	-	thioredoxin family protein
1476	 34.21	0	1705691..1706374	+	227	118477254	-	BALH_1565	-	prolipoprotein diacylglyceryl transferase
1477	 31.87	-1	1706425..1706970	-	181	118477255	-	BALH_1566	-	MerR family transcriptional regulator
1478	 30.53	-1	1707205..1708773	+	522	118477256	-	BALH_1567	-	IS605 family transposase
1479	 36.60	0	1708955..1710361	+	468	118477257	-	BALH_1568	-	D-serine dehydratase
1480	 33.65	0	1710497..1711753	+	418	118477258	-	BALH_1569	-	hypothetical protein
1481	 33.54	0	1711784..1712740	-	318	118477259	-	BALH_1570	-	hypothetical protein
1482	 35.01	0	1712737..1713807	-	356	118477260	-	BALH_1571	-	hypothetical protein
1483	 32.47	0	1713800..1714264	-	154	118477261	-	BALH_1572	-	hypothetical protein
1484	 33.75	0	1714240..1714722	-	160	118477262	-	BALH_1573	-	RNA polymerase sigma factor SigW
1485	 33.76	0	1714943..1715644	+	233	118477263	-	BALH_1574	-	response regulator
1486	 32.16	-1	1715649..1716755	+	368	118477264	-	BALH_1575	-	sensor histidine kinase
1487	 34.29	0	1716870..1717811	+	313	118477265	-	BALH_1576	-	multidrug ABC transporter, ATP-binding protein
1488	 35.95	0	1717849..1718958	+	369	118477266	-	BALH_1577	-	multidrug ABC transporter, permease
1489	 32.07	-1	1718921..1720105	+	394	118477267	-	BALH_1578	-	multidrug ABC transporter, permease component
1490	 32.18	-1	1720211..1721428	+	405	118477268	cls	BALH_1579	-	cardiolipin synthetase
1491	 38.71	0	1721483..1722226	-	247	118477269	-	BALH_1580	-	uridylate kinase
1492	 37.34	0	1722604..1723875	+	423	118477270	gltT	BALH_1581	-	proton/sodium-glutamate symport protein
1493	 38.40	0	1723900..1725339	+	479	118477271	aspA	BALH_1582	-	aspartate ammonia-lyase
1494	 39.59	+1	1725384..1727126	+	580	118477272	ykwA	BALH_1583	-	malate dehydrogenase
1495	 34.10	0	1727192..1728490	+	432	118477273	-	BALH_1584	-	sensor histidine kinase
1496	 35.59	0	1728451..1729425	+	324	118477274	-	BALH_1585	-	response regulator
1497	 36.49	0	1729542..1732736	+	1064	118477275	-	BALH_1586	-	SWF/SNF family helicase
1498	 35.77	0	1733697..1734680	+	327	118477276	-	BALH_1587	-	asparagine synthetase AsnA
1499	 29.78	-1	1734822..1735271	+	149	118477277	-	BALH_1588	-	hypothetical protein
1500	 36.83	0	1735459..1736688	-	409	118477278	-	BALH_1589	-	aspartate kinase
1501	 33.99	0	1737266..1738174	+	302	118477279	-	BALH_1590	-	hypothetical protein
1502	 33.50	0	1738178..1738783	+	201	118477280	-	BALH_1591	-	hypothetical protein
1503	 33.89	0	1738789..1740414	+	541	118477281	-	BALH_1592	-	hypothetical protein
1504	 37.45	0	1740443..1740928	-	161	118477282	-	BALH_1593	-	MutT/NUDIX family protein
1505	 35.50	0	1741104..1742348	+	414	118477283	-	BALH_1594	-	N-acetylmuramoyl-L-alanine amidase
1506	 34.25	0	1742669..1744081	+	470	118477284	-	BALH_1595	-	N-acetylmuramoyl-L-alanine amidase
1507	 32.90	0	1744289..1744753	-	154	118477285	-	BALH_1596	-	hypothetical protein
1508	 31.94	-1	1744975..1745262	-	95	118477286	-	BALH_1597	-	hypothetical protein
1509	 33.97	0	1745531..1746943	+	470	118477287	cstA	BALH_1600	-	carbon starvation protein A
1510	 37.02	0	1747033..1747845	+	270	118477288	-	BALH_1601	-	polyphosphate:AMP phosphotransferase
1511	 41.69	+1	1748034..1749302	+	422	118477289	-	BALH_1602	-	tetracycline resistance protein
1512	 36.18	0	1749387..1750370	-	327	118477290	-	BALH_1603	-	3-oxoacyl-(acyl carrier protein) synthase III
1513	 35.99	0	1750536..1751099	+	187	118477291	-	BALH_1604	-	hypothetical protein
1514	 35.40	0	1751583..1752842	+	419	118477292	-	BALH_1605	-	GTP-binding protein
1515	 34.42	0	1752884..1754545	-	553	118477293	oppA	BALH_1606	-	oligopeptide transporter, periplasmic-binding protein
1516	 38.28	0	1754747..1755958	+	403	118477294	-	BALH_1607	-	fosmidomycin resistance protein
1517	 38.67	0	1755969..1756886	+	305	118477295	cysK	BALH_1608	-	cysteine synthase
1518	 34.50	0	1756964..1757476	+	170	118477296	-	BALH_1609	-	acetyltransferase
1519	 35.27	0	1757558..1758382	+	274	118477297	-	BALH_1610	-	hypothetical protein
1520	 36.70	0	1758421..1760055	-	544	118477298	-	BALH_1612	-	polysaccharide biosynthesis family protein
1521	 36.17	0	1760800..1762137	+	445	118477299	-	BALH_1614	-	SNF family sodium-dependent transporter
1522	 29.93	-1	1762177..1762881	-	234	118477300	-	BALH_1615	-	polysaccharide deacetylase, chitooligosaccharide deacetylase
1523	 32.58	0	1763212..1763475	+	87	118477301	-	BALH_1616	-	hypothetical protein
1524	 31.88	-1	1763658..1764344	+	228	118477302	-	BALH_1617	-	hypothetical protein
1525	 30.00	-1	1764437..1765096	+	219	118477303	-	BALH_1618	-	fibronectin-binding protein
1526	 54.28	+2	1765845..1766732	-	295	118477304	-	BALH_1619	-	dehydrogenase, 3-hydroxyisobutyrate dehydrogenase
1527	 47.28	+2	1767146..1767439	+	97	118477305	-	BALH_1620	-	hypothetical protein
1528	 35.67	0	1767995..1768594	-	199	118477306	-	BALH_1621	-	peptide methionine sulfoxide reductase
1529	 38.21	0	1768622..1769380	-	252	118477307	-	BALH_1622	-	short chain dehydrogenase
1530	 38.89	0	1770344..1771243	+	299	118477308	ilvE	BALH_1623	-	branched-chain amino acid aminotransferase
1531	 40.22	+1	1771266..1772978	+	570	118477309	ilvB	BALH_1624	-	acetolactate synthase 3 catalytic subunit
1532	 32.92	0	1772966..1773205	+	79	118477310	-	BALH_1625	-	acetolactate synthase 1 regulatory subunit
1533	 41.37	+1	1773220..1774227	+	335	118477311	-	BALH_1626	-	ketol-acid reductoisomerase
1534	 41.10	+1	1774274..1775947	+	557	118477312	-	BALH_1628	-	dihydroxy-acid dehydratase
1535	 35.71	0	1775979..1777241	+	420	118477313	-	BALH_1629	-	threonine dehydratase
1536	 35.14	0	1777602..1778705	-	367	118477314	-	BALH_1630	-	capsule biosynthesis protein
1537	 35.29	0	1778918..1779634	+	238	118477315	-	BALH_1631	-	hypothetical protein
1538	 33.80	0	1779638..1780501	+	287	118477316	-	BALH_1632	-	acetyltransferase
1539	 37.92	0	1780664..1781884	+	406	118477317	-	BALH_1634	-	multidrug resistance protein B
1540	 35.95	0	1781938..1782702	-	254	118477318	-	BALH_1635	-	oxidoreductase
1541	 34.93	0	1782889..1783827	+	312	118477319	-	BALH_1636	-	alpha/beta fold family hydrolase
1542	 33.00	0	1783883..1784488	+	201	118477320	-	BALH_1637	-	hypothetical protein
1543	 30.78	-1	1784542..1785522	-	326	118477321	-	BALH_1638	-	beta-lactamase
1544	 37.67	0	1785865..1786509	+	214	118477322	-	BALH_1639	-	transcriptional regulatory protein
1545	 38.61	0	1786637..1788151	+	504	118477323	-	BALH_1640	-	succinyl-CoA: coenzyme A transferase
1546	 31.53	-1	1788363..1788806	+	147	118477324	-	BALH_1641	-	acetyltransferase
1547	 33.89	0	1788834..1789193	+	119	118477325	-	BALH_1642	-	hypothetical protein
1548	 37.56	0	1789247..1790572	+	441	118477326	-	BALH_1643	-	chlorohydrolase
1549	 37.12	0	1791058..1791876	+	272	118477327	-	BALH_1644	-	hypothetical protein
1550	 33.33	0	1791880..1792341	+	153	118477328	-	BALH_1645	-	hypothetical protein
1551	 31.23	-1	1792380..1792760	-	126	118477329	-	BALH_1646	-	hypothetical protein
1552	 33.15	0	1792946..1794574	+	542	118477330	oppA	BALH_1647	-	oligopeptide ABC transporter, substrate-binding protein
1553	 29.26	-1	1794883..1795716	+	277	118477331	-	BALH_1648	-	hypothetical protein
1554	 33.60	0	1795840..1796220	+	126	118477332	-	BALH_1649	-	hypothetical protein
1555	 38.42	0	1796550..1798595	+	681	118477333	-	BALH_1650	-	hypothetical protein
1556	 36.21	0	1798803..1800017	+	404	118477334	-	BALH_1651	-	coenzyme PQQ synthesis protein
1557	 33.90	0	1800135..1800665	-	176	118477335	-	BALH_1652	-	ribosomal-protein-alanine acetyltransferase
1558	 30.51	-1	1800763..1801506	+	247	118477336	vanR	BALH_1653	-	two-component response regulator
1559	 31.56	-1	1801436..1802563	+	375	118477337	vanS	BALH_1654	-	sensor histidine kinase
1560	 37.75	0	1802646..1803506	+	286	118477338	-	BALH_1655	-	cell wall endopeptidase
1561	 34.75	0	1803519..1804367	+	282	118477339	pip	BALH_1656	-	proline iminopeptidase
1562	 37.35	0	1804436..1805731	-	431	118477340	-	BALH_1657	-	manganese transport protein MntH
1563	 38.23	0	1806207..1807166	+	319	118477341	-	BALH_1658	-	hypothetical protein
1564	 32.79	0	1807352..1808827	-	491	118477342	-	BALH_1659	-	hypothetical protein
1565	 35.58	0	1809002..1809934	+	310	118477343	panE	BALH_1660	-	2-dehydropantoate 2-reductase
1566	 35.08	0	1810551..1812377	+	608	118477344	-	BALH_1662	-	amino acid permease
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.