IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1420	 38.06	0	1649774..1650133	+	119	118477198	-	BALH_1503	-	flagellar motor switch protein
1421	 34.91	0	1650463..1651221	+	252	118477199	fliP	BALH_1504	-	flagellar biosynthesis protein FliP
1422	 34.78	0	1651546..1652307	+	253	118477200	fliR	BALH_1505	-	flagellar biosynthesis protein FliR
1423	 34.77	0	1652318..1653364	+	348	118477201	flhB	BALH_1506	-	flagellar biosynthesis protein FlhB
1424	 36.57	0	1653388..1655454	+	688	162382782	flhA	BALH_1507	-	flagellar biosynthesis protein FlhA
1425	 35.85	0	1655469..1656779	+	436	118477203	flhF	BALH_1508	-	flagellar biosynthesis regulator FlhF
1426	 36.82	0	1656822..1657595	+	257	118477204	flgG	BALH_1509	-	flagellar basal body rod protein FlgG
1427	 35.02	0	1657713..1658423	+	236	118477205	-	BALH_1510	-	metal-dependent hydrolases related to alanyl-tRNA synthetase
1428	 36.92	0	1658441..1659277	+	278	118477206	-	BALH_1511	-	transcriptional regulator
1429	 38.64	0	1659261..1659995	+	244	118477207	-	BALH_1512	-	branched-chain amino acid transport protein
1430	 34.19	0	1660618..1661202	+	194	118477208	-	BALH_1513	-	TetR family transcriptional regulator
1431	 31.40	-1	1661173..1661379	-	68	118477209	-	BALH_1514	-	hypothetical protein
1432	 27.03	-2	1661687..1662289	-	200	118477210	-	BALH_1515	-	VanZ family protein
1433	 33.65	0	1662348..1662662	-	104	118477211	-	BALH_1516	-	hypothetical protein
1434	 32.67	0	1663512..1664117	-	201	118477212	-	BALH_1517	-	hypothetical protein
1435	 36.01	0	1664120..1664455	-	111	118477213	-	BALH_1518	-	hypothetical protein
1436	 30.45	-1	1664889..1666100	-	403	118477214	-	BALH_1519	-	transcriptional regulator
1437	 35.38	0	1666219..1667487	+	422	118477215	-	BALH_1520	-	multidrug resistance protein
1438	 33.51	0	1667563..1668117	+	184	118477216	-	BALH_1521	-	hypothetical protein
1439	 32.66	0	1668158..1669051	-	297	118477217	-	BALH_1522	-	LysR family transcriptional regulator
1440	 38.47	0	1669214..1670206	+	330	118477218	-	BALH_1523	-	ABC transporter, ATP-binding protein
1441	 34.99	0	1670184..1671209	+	341	118477219	-	BALH_1524	-	ABC transporter, substrate-binding protein
1442	 36.21	0	1671222..1672892	+	556	118477220	-	BALH_1526	-	iron/thiamine ABC transporter, permease
1443	 35.77	0	1672841..1674151	+	436	118477221	-	BALH_1527	-	Zn-dependent hydrolase
1444	 31.41	-1	1674172..1675005	+	277	118477222	-	BALH_1528	-	hypothetical protein
1445	 32.86	0	1675059..1675481	-	140	118477223	-	BALH_1529	-	hypothetical protein
1446	 38.52	0	1675988..1676662	+	224	118477224	-	BALH_1530	-	hypothetical protein
1447	 31.34	-1	1676760..1677161	+	133	118477225	-	BALH_1531	-	hypothetical protein
1448	 31.22	-1	1677189..1677851	+	220	118477226	-	BALH_1532	-	D-alanyl-D-alanine carboxypeptidase
1449	 29.44	-1	1677902..1678543	+	213	118477227	-	BALH_1533	-	hypothetical protein
1450	 31.25	-1	1678702..1679277	+	191	118477228	gpm	BALH_1534	-	phosphoglycerate mutase family protein
1451	 39.19	+1	1679346..1679738	+	130	118477229	-	BALH_1535	-	hypothetical protein
1452	 35.60	0	1679778..1680617	-	279	118477230	-	BALH_1536	-	alpha/beta fold family hydrolase
1453	 32.60	0	1680967..1681377	-	136	118477231	-	BALH_1537	-	MarR family transcriptional regulator
1454	 33.45	0	1681503..1682330	+	275	118477232	-	BALH_1538	-	hypothetical protein
1455	 36.01	0	1682373..1684202	-	609	118477233	-	BALH_1539	-	asparagine synthetase, glutamine-hydrolyzing
1456	 32.63	0	1684461..1685027	+	188	118477234	-	BALH_1540	-	RNA polymerase factor sigma-70
1457	 35.32	0	1685024..1686130	+	368	118477235	-	BALH_1541	-	ECF-type sigma factor negative effector
1458	 40.25	+1	1686171..1687283	-	370	118477236	-	BALH_1542	-	glycosyl hydrolase
1459	 35.89	0	1687435..1688334	+	299	118477237	czcD	BALH_1543	-	cobalt-zinc-cadmium resistance protein
1460	 32.92	0	1688755..1689474	-	239	118477238	gntR	BALH_1544	-	GntR family transcriptional regulator
1461	 32.87	0	1689443..1690519	-	358	118477239	-	BALH_1546	-	drug/metabolite exporter family protein
1462	 32.32	0	1690594..1692177	-	527	118477240	-	BALH_1547	-	cobalamin synthesis protein
1463	 32.94	0	1692182..1692946	+	254	118477241	-	BALH_1548	-	permease
1464	 34.14	0	1692960..1693832	+	290	118477242	-	BALH_1549	-	permease
1465	 35.68	0	1693924..1694604	+	226	118477243	-	BALH_1550	-	hypothetical protein
1466	 36.04	0	1694937..1696340	+	467	118477244	-	BALH_1552	-	Na+/H+ antiporter
1467	 37.87	0	1696594..1697982	+	462	118477245	fumC	BALH_1553	-	fumarate hydratase
1468	 32.69	0	1699171..1699944	+	257	118477246	-	BALH_1554	-	hypothetical protein
1469	 36.17	0	1700043..1701452	+	469	118477247	-	BALH_1556	-	Na+ driven multidrug efflux pump
1470	 33.75	0	1701508..1702227	-	239	118477248	-	BALH_1557	-	peptidase E
1471	 31.00	-1	1702570..1702998	+	142	118477249	-	BALH_1558	-	hypothetical protein
1472	 33.09	0	1703106..1703519	+	137	118477250	-	BALH_1559	-	hypothetical protein
1473	 32.10	-1	1703524..1704336	+	270	118477251	-	BALH_1560	-	cell surface protein
1474	 36.13	0	1704390..1705103	+	237	118477252	-	BALH_1562	-	cytochrome c-type biogenesis protein
1475	 35.14	0	1705122..1705676	+	184	118477253	-	BALH_1563	-	thioredoxin family protein
1476	 34.21	0	1705691..1706374	+	227	118477254	-	BALH_1565	-	prolipoprotein diacylglyceryl transferase
1477	 31.87	-1	1706425..1706970	-	181	118477255	-	BALH_1566	-	MerR family transcriptional regulator
1478	 30.53	-1	1707205..1708773	+	522	118477256	-	BALH_1567	-	IS605 family transposase
1479	 36.60	0	1708955..1710361	+	468	118477257	-	BALH_1568	-	D-serine dehydratase
1480	 33.65	0	1710497..1711753	+	418	118477258	-	BALH_1569	-	hypothetical protein
1481	 33.54	0	1711784..1712740	-	318	118477259	-	BALH_1570	-	hypothetical protein
1482	 35.01	0	1712737..1713807	-	356	118477260	-	BALH_1571	-	hypothetical protein
1483	 32.47	0	1713800..1714264	-	154	118477261	-	BALH_1572	-	hypothetical protein
1484	 33.75	0	1714240..1714722	-	160	118477262	-	BALH_1573	-	RNA polymerase sigma factor SigW
1485	 33.76	0	1714943..1715644	+	233	118477263	-	BALH_1574	-	response regulator
1486	 32.16	-1	1715649..1716755	+	368	118477264	-	BALH_1575	-	sensor histidine kinase
1487	 34.29	0	1716870..1717811	+	313	118477265	-	BALH_1576	-	multidrug ABC transporter, ATP-binding protein
1488	 35.95	0	1717849..1718958	+	369	118477266	-	BALH_1577	-	multidrug ABC transporter, permease
1489	 32.07	-1	1718921..1720105	+	394	118477267	-	BALH_1578	-	multidrug ABC transporter, permease component
1490	 32.18	-1	1720211..1721428	+	405	118477268	cls	BALH_1579	-	cardiolipin synthetase
1491	 38.71	0	1721483..1722226	-	247	118477269	-	BALH_1580	-	uridylate kinase
1492	 37.34	0	1722604..1723875	+	423	118477270	gltT	BALH_1581	-	proton/sodium-glutamate symport protein
1493	 38.40	0	1723900..1725339	+	479	118477271	aspA	BALH_1582	-	aspartate ammonia-lyase
1494	 39.59	+1	1725384..1727126	+	580	118477272	ykwA	BALH_1583	-	malate dehydrogenase
1495	 34.10	0	1727192..1728490	+	432	118477273	-	BALH_1584	-	sensor histidine kinase
1496	 35.59	0	1728451..1729425	+	324	118477274	-	BALH_1585	-	response regulator
1497	 36.49	0	1729542..1732736	+	1064	118477275	-	BALH_1586	-	SWF/SNF family helicase
1498	 35.77	0	1733697..1734680	+	327	118477276	-	BALH_1587	-	asparagine synthetase AsnA
1499	 29.78	-1	1734822..1735271	+	149	118477277	-	BALH_1588	-	hypothetical protein
1500	 36.83	0	1735459..1736688	-	409	118477278	-	BALH_1589	-	aspartate kinase
1501	 33.99	0	1737266..1738174	+	302	118477279	-	BALH_1590	-	hypothetical protein
1502	 33.50	0	1738178..1738783	+	201	118477280	-	BALH_1591	-	hypothetical protein
1503	 33.89	0	1738789..1740414	+	541	118477281	-	BALH_1592	-	hypothetical protein
1504	 37.45	0	1740443..1740928	-	161	118477282	-	BALH_1593	-	MutT/NUDIX family protein
1505	 35.50	0	1741104..1742348	+	414	118477283	-	BALH_1594	-	N-acetylmuramoyl-L-alanine amidase
1506	 34.25	0	1742669..1744081	+	470	118477284	-	BALH_1595	-	N-acetylmuramoyl-L-alanine amidase
1507	 32.90	0	1744289..1744753	-	154	118477285	-	BALH_1596	-	hypothetical protein
1508	 31.94	-1	1744975..1745262	-	95	118477286	-	BALH_1597	-	hypothetical protein
1509	 33.97	0	1745531..1746943	+	470	118477287	cstA	BALH_1600	-	carbon starvation protein A
1510	 37.02	0	1747033..1747845	+	270	118477288	-	BALH_1601	-	polyphosphate:AMP phosphotransferase
1511	 41.69	+1	1748034..1749302	+	422	118477289	-	BALH_1602	-	tetracycline resistance protein
1512	 36.18	0	1749387..1750370	-	327	118477290	-	BALH_1603	-	3-oxoacyl-(acyl carrier protein) synthase III
1513	 35.99	0	1750536..1751099	+	187	118477291	-	BALH_1604	-	hypothetical protein
1514	 35.40	0	1751583..1752842	+	419	118477292	-	BALH_1605	-	GTP-binding protein
1515	 34.42	0	1752884..1754545	-	553	118477293	oppA	BALH_1606	-	oligopeptide transporter, periplasmic-binding protein
1516	 38.28	0	1754747..1755958	+	403	118477294	-	BALH_1607	-	fosmidomycin resistance protein
1517	 38.67	0	1755969..1756886	+	305	118477295	cysK	BALH_1608	-	cysteine synthase
1518	 34.50	0	1756964..1757476	+	170	118477296	-	BALH_1609	-	acetyltransferase
1519	 35.27	0	1757558..1758382	+	274	118477297	-	BALH_1610	-	hypothetical protein
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.