IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1337	 36.95	0	1556184..1556930	+	248	118477115	map	BALH_1416	-	methionine aminopeptidase
1338	 36.27	0	1557169..1557849	+	226	118477116	-	BALH_1417	-	xanthine phosphoribosyltransferase
1339	 38.47	0	1557853..1559175	+	440	118477117	pbuX	BALH_1418	-	xanthine permease
1340	 34.48	0	1559248..1560555	-	435	118477118	-	BALH_1420	-	hypothetical protein
1341	 35.55	0	1560960..1564619	+	1219	118477119	-	BALH_1421	-	GTP1/OBG family GTPase
1342	 34.83	0	1564950..1565417	+	155	118477120	-	BALH_1422	-	acetyltransferase
1343	 35.90	0	1565439..1565711	+	90	118477121	-	BALH_1423	-	hypothetical protein
1344	 38.25	0	1565714..1566547	+	277	118477122	-	BALH_1424	-	thiosulfate sulfurtransferase
1345	 34.00	0	1567104..1567553	-	149	118477123	-	BALH_1425	-	hypothetical protein
1346	 35.67	0	1567952..1569190	+	412	118477124	-	BALH_1426	-	glutathionylspermidine synthase
1347	 34.37	0	1569183..1569569	+	128	118477125	-	BALH_1427	-	hypothetical protein
1348	 34.02	0	1570262..1570987	+	241	118477126	-	BALH_1428	-	cation transporter
1349	 36.53	0	1571079..1571984	+	301	118477127	-	BALH_1429	-	5'-3' exonuclease
1350	 37.72	0	1572383..1587415	-	5010	118477128	-	BALH_1430	-	hypothetical protein
1351	 30.78	-1	1587538..1588398	+	286	118477129	-	BALH_1431	-	acetyltransferase
1352	 34.40	0	1588439..1588999	-	186	118477130	-	BALH_1432	-	isochorismatase
1353	 35.63	0	1589181..1589441	+	86	118477131	-	BALH_1433	-	hypothetical protein
1354	 36.51	0	1589444..1590355	-	303	118477132	-	BALH_1435	-	DMT family permease
1355	 36.69	0	1590363..1590749	-	128	118477133	rnhA	BALH_1436	-	ribonuclease H
1356	 34.94	0	1590819..1591691	-	290	118477134	-	BALH_1437	-	lacX protein
1357	 31.89	-1	1591875..1592360	+	161	118477135	-	BALH_1438	-	hypothetical protein
1358	 34.70	0	1592513..1593172	+	219	118477136	-	BALH_1439	-	hypothetical protein
1359	 36.55	0	1593395..1593643	-	82	118477137	-	BALH_1440	-	hypothetical protein
1360	 37.18	0	1593763..1593996	-	77	118477138	cspB	BALH_1441	-	cold-shock DNA-binding protein family protein
1361	 36.21	0	1594224..1594952	+	242	118477139	-	BALH_1442	-	hypothetical protein
1362	 33.48	0	1595019..1595723	+	234	118477140	-	BALH_1444	-	amino acid transporter LysE
1363	 34.78	0	1595692..1596036	+	114	118477141	-	BALH_1445	-	hypothetical protein
1364	 28.73	-2	1596127..1596756	+	209	118477142	-	BALH_1446	-	fatty acid hydroxylase FAH1P
1365	 39.14	+1	1597324..1598874	+	516	118477143	-	BALH_1447	-	sodium/proline symporter
1366	 37.86	0	1598977..1600413	+	478	118477144	bioA	BALH_1448	-	aminotransferase
1367	 30.11	-1	1600496..1600774	+	92	118477145	-	BALH_1449	-	hypothetical protein
1368	 37.29	0	1600834..1601997	-	387	118477146	gerN	BALH_1450	-	Na+/H+ exchanger family protein
1369	 33.81	0	1602309..1604003	+	564	118477147	-	BALH_1451	-	Zn-dependent hydrolase
1370	 33.81	0	1604099..1604929	+	276	118477148	-	BALH_1452	-	MerR family transcriptional regulator
1371	 34.96	0	1605068..1606423	+	451	118477150	-	BALH_1454	-	Na+ driven multidrug efflux pump
1372	 40.32	+1	1605121..1605306	-	61	118477149	-	BALH_1453	-	hypothetical protein
1373	 32.75	0	1606459..1607145	-	228	118477151	-	BALH_1455	-	hypothetical protein
1374	 33.16	0	1607285..1607863	+	192	118477152	-	BALH_1456	-	hypothetical protein
1375	 36.96	0	1608612..1609355	+	247	118477153	-	BALH_1457	-	oxygen-insensitive NADPH nitroreductase
1376	 33.19	0	1609352..1610026	+	224	118477154	-	BALH_1458	-	thiJ/PfpI family protein
1377	 29.34	-1	1610139..1610864	-	241	118477155	-	BALH_1459	-	membrane protein
1378	 36.04	0	1610989..1612209	-	406	118477156	-	BALH_1461	-	permease
1379	 36.22	0	1612229..1612678	-	149	118477157	-	BALH_1462	-	ArsR family transcriptional regulator
1380	 32.62	0	1612807..1614075	-	422	118477158	-	BALH_1463	-	macrolide efflux protein
1381	 33.12	0	1614029..1614496	-	155	118477159	-	BALH_1464	-	fosfomycin resistance protein
1382	 25.57	-2	1615024..1615242	+	72	118477160	-	BALH_1465	-	stage 0 sporulation regulatory protein
1383	 27.69	-2	1615291..1615485	+	64	118477161	-	BALH_1466	-	host factor protein
1384	 34.95	0	1615513..1616130	-	205	118477162	-	BALH_1467	-	HAD superfamily hydrolase
1385	 34.04	0	1616266..1617120	+	284	118477163	motA	BALH_1468	-	flagellar motor protein MotP
1386	 35.67	0	1617137..1617820	+	227	118477164	motB	BALH_1469	-	flagellar motor protein MotS
1387	 33.33	0	1617970..1618338	+	122	118477165	cheY	BALH_1470	-	chemotaxis protein
1388	 34.83	0	1618468..1620471	+	667	118477166	-	BALH_1471	-	chemotaxis protein
1389	 36.01	0	1620645..1622288	+	547	118477167	-	BALH_1472	-	flagellar motor switch protein
1390	 34.99	0	1622318..1623706	+	462	118477168	-	BALH_1473	-	hypothetical protein
1391	 34.31	0	1623734..1624450	+	238	118477169	-	BALH_1474	-	hypothetical protein
1392	 32.83	0	1624484..1625281	-	265	118477170	-	BALH_1475	-	chemotaxis protein methyltransferase
1393	 31.17	-1	1625306..1625860	-	184	118477171	-	BALH_1476	-	hypothetical protein
1394	 32.91	0	1625938..1626411	+	157	118477172	-	BALH_1477	-	hypothetical protein
1395	 27.37	-2	1626428..1626880	+	150	118477173	-	BALH_1478	-	hypothetical protein
1396	 35.49	0	1626898..1628196	+	432	118477174	flgK	BALH_1479	-	flagellar hook-associated protein FlgK
1397	 34.95	0	1628402..1629265	+	287	118477175	flgL	BALH_1480	-	flagellar hook-associated protein FlgL
1398	 33.91	0	1629286..1630662	+	458	118477176	fliD	BALH_1481	-	flagellar capping protein
1399	 31.44	-1	1630685..1631053	+	122	118477177	-	BALH_1482	-	flagellar protein
1400	 37.28	0	1631037..1631315	+	92	118477178	-	BALH_1483	-	hypothetical protein
1401	 33.81	0	1631673..1632089	+	138	118477179	flgB	BALH_1484	-	flagellar basal body rod protein FlgB
1402	 36.23	0	1632110..1632523	+	137	118477180	flgC	BALH_1485	-	flagellar basal body rod protein FlgC
1403	 36.06	0	1632510..1632839	+	109	118477181	fliE	BALH_1486	-	flagellar hook-basal body protein FliE
1404	 37.08	0	1632862..1634436	+	524	118477182	fliF	BALH_1487	-	flagellar MS-ring protein
1405	 33.92	0	1634426..1635454	+	342	118477183	fliG	BALH_1488	-	flagellar motor switch protein G
1406	 35.20	0	1635432..1636127	+	231	118477184	fliH	BALH_1489	-	flagellar assembly protein H
1407	 36.78	0	1636124..1637428	+	434	118477185	fliI	BALH_1490	-	flagellum-specific ATP synthase
1408	 31.39	-1	1637545..1637955	+	136	118477186	-	BALH_1491	-	hypothetical protein
1409	 34.39	0	1637948..1639081	+	377	118477187	-	BALH_1492	-	hypothetical protein
1410	 38.05	0	1639085..1639657	+	190	118477188	flgD	BALH_1493	-	flagellar basal body rod modification protein
1411	 37.06	0	1639679..1640992	+	437	118477189	flgE	BALH_1494	-	flagellar hook protein FlgE
1412	 35.56	0	1641663..1642157	+	164	118477190	-	BALH_1495	-	hypothetical protein
1413	 33.77	0	1642286..1643194	+	302	118477191	-	BALH_1496	-	chemotaxis protein
1414	 31.56	-1	1643983..1644942	+	319	118477192	-	BALH_1497	-	hypothetical protein
1415	 38.27	0	1645038..1645847	-	269	118477193	-	BALH_1498	-	flagellin
1416	 37.02	0	1646077..1647432	-	451	162382783	-	BALH_1499	-	flagellin
1417	 38.30	0	1647690..1648475	+	261	118477195	-	BALH_1500	-	soluble lytic murein transglycosylase
1418	 32.44	0	1648538..1648762	+	74	118477196	-	BALH_1501	-	flagellar motor switch protein
1419	 38.10	0	1648777..1649763	+	328	118477197	fliM	BALH_1502	-	flagellar motor switch protein FliM
1420	 38.06	0	1649774..1650133	+	119	118477198	-	BALH_1503	-	flagellar motor switch protein
1421	 34.91	0	1650463..1651221	+	252	118477199	fliP	BALH_1504	-	flagellar biosynthesis protein FliP
1422	 34.78	0	1651546..1652307	+	253	118477200	fliR	BALH_1505	-	flagellar biosynthesis protein FliR
1423	 34.77	0	1652318..1653364	+	348	118477201	flhB	BALH_1506	-	flagellar biosynthesis protein FlhB
1424	 36.57	0	1653388..1655454	+	688	162382782	flhA	BALH_1507	-	flagellar biosynthesis protein FlhA
1425	 35.85	0	1655469..1656779	+	436	118477203	flhF	BALH_1508	-	flagellar biosynthesis regulator FlhF
1426	 36.82	0	1656822..1657595	+	257	118477204	flgG	BALH_1509	-	flagellar basal body rod protein FlgG
1427	 35.02	0	1657713..1658423	+	236	118477205	-	BALH_1510	-	metal-dependent hydrolases related to alanyl-tRNA synthetase
1428	 36.92	0	1658441..1659277	+	278	118477206	-	BALH_1511	-	transcriptional regulator
1429	 38.64	0	1659261..1659995	+	244	118477207	-	BALH_1512	-	branched-chain amino acid transport protein
1430	 34.19	0	1660618..1661202	+	194	118477208	-	BALH_1513	-	TetR family transcriptional regulator
1431	 31.40	-1	1661173..1661379	-	68	118477209	-	BALH_1514	-	hypothetical protein
1432	 27.03	-2	1661687..1662289	-	200	118477210	-	BALH_1515	-	VanZ family protein
1433	 33.65	0	1662348..1662662	-	104	118477211	-	BALH_1516	-	hypothetical protein
1434	 32.67	0	1663512..1664117	-	201	118477212	-	BALH_1517	-	hypothetical protein
1435	 36.01	0	1664120..1664455	-	111	118477213	-	BALH_1518	-	hypothetical protein
1436	 30.45	-1	1664889..1666100	-	403	118477214	-	BALH_1519	-	transcriptional regulator
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.