IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1259	 36.14	0	1482472..1483077	+	201	118477037	-	BALH_1338	-	hypothetical protein
1260	 38.49	0	1483201..1483491	-	96	118477038	-	BALH_1339	-	ferredoxin
1261	 32.68	0	1483705..1484778	+	357	118477039	-	BALH_1340	-	hypothetical protein
1262	 35.29	0	1484768..1486297	+	509	118477040	recQ	BALH_1341	-	ATP-dependent DNA helicase RecQ
1263	 34.47	0	1486246..1486860	+	204	118477041	-	BALH_1342	-	CAAX amino terminal protease family protein
1264	 32.73	0	1486868..1487362	+	164	118477042	-	BALH_1343	-	peptidoglycan-binding protein
1265	 32.43	0	1487420..1488196	+	258	118477043	-	BALH_1344	-	phosphoesterase
1266	 34.23	0	1488181..1489071	+	296	118477044	-	BALH_1345	-	MerR family transcriptional regulator
1267	 35.47	0	1489149..1489757	+	202	118477045	-	BALH_1346	-	adaptor protein
1268	 37.68	0	1490025..1491311	+	428	118477046	gdhA	BALH_1347	-	glutamate dehydrogenase (NAD)
1269	 38.81	0	1491381..1491599	+	72	118477047	-	BALH_1348	-	hypothetical protein
1270	 37.59	0	1491999..1492538	+	179	118477048	-	BALH_1349	-	N-acetylmuramoyl-L-alanine amidase
1271	 38.23	0	1492648..1493628	+	326	118477049	trxB	BALH_1350	-	thioredoxin reductase
1272	 36.31	0	1493667..1494641	-	324	118477050	-	BALH_1351	-	asparaginase
1273	 37.17	0	1495123..1495800	+	225	118477051	cmk	BALH_1352	-	cytidylate kinase
1274	 36.29	0	1496134..1497282	+	382	118477052	rpsA	BALH_1353	-	30S ribosomal protein S1
1275	 38.57	0	1497295..1498344	+	349	118477053	-	BALH_1354	-	isopentenyl pyrophosphate isomerase
1276	 41.31	+1	1498661..1498873	-	70	118477054	-	BALH_1355	-	hypothetical protein
1277	 34.43	0	1498888..1499523	+	211	118477055	-	BALH_1356	-	hypothetical protein
1278	 41.16	+1	1499516..1500409	+	297	118477056	-	BALH_1357	-	hypothetical protein
1279	 37.63	0	1500406..1500591	+	61	118477057	-	BALH_1358	-	hypothetical protein
1280	 38.29	0	1500716..1502026	+	436	118477058	engA	BALH_1359	-	GTP-binding protein EngA
1281	 41.06	+1	1502045..1503067	+	340	118477059	gpsA	BALH_1360	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
1282	 32.57	0	1503175..1503435	+	86	118477060	-	BALH_1361	-	hypothetical protein
1283	 33.61	0	1503970..1504683	+	237	118477061	-	BALH_1362	-	hypothetical protein
1284	 38.61	0	1504926..1506404	+	492	118477062	-	BALH_1363	-	stage IV sporulation protein A
1285	 38.98	0	1506622..1506975	+	117	118477063	-	BALH_1364	-	DNA-binding protein HU
1286	 39.82	+1	1507096..1507665	+	189	118477064	folE	BALH_1365	-	GTP cyclohydrolase I
1287	 33.99	0	1507871..1508629	+	252	118477065	-	BALH_1366	-	heptaprenyl diphosphate synthase component I
1288	 36.30	0	1508530..1509372	+	280	118477066	ubiE	BALH_1367	-	ubiquinone/menaquinone biosynthesis methyltransferase
1289	 36.42	0	1509395..1510366	+	323	118477067	hepT	BALH_1368	-	heptaprenyl diphosphate synthase, component II
1290	 37.88	0	1510410..1510937	+	175	118477068	ndk	BALH_1369	-	nucleoside diphosphate kinase
1291	 40.66	+1	1511208..1512380	+	390	118477069	-	BALH_1370	-	chorismate synthase
1292	 37.73	0	1512380..1513471	+	363	118477070	aroB	BALH_1371	-	3-dehydroquinate synthase
1293	 36.69	0	1513585..1514715	+	376	118477071	-	BALH_1372	-	histidinol-phosphate aminotransferase
1294	 34.18	0	1514986..1516290	+	434	118477072	-	BALH_1373	-	TPR repeat-containing protein
1295	 33.33	0	1516364..1516900	+	178	118477073	-	BALH_1374	-	hypothetical protein
1296	 34.81	0	1517037..1517510	+	157	118477074	-	BALH_1375	-	hypothetical protein
1297	 44.83	+2	1517654..1518166	+	170	118477075	-	BALH_1376	-	menaquinol-cytochrome c reductase, iron-sulfur subunit
1298	 37.93	0	1518167..1518841	+	224	118477076	-	BALH_1377	-	cytochrome b6
1299	 39.45	+1	1518885..1519652	+	255	118477077	qcrC	BALH_1378	-	menaquinol-cytochrome c reductase, cytochrome c subunit
1300	 32.83	0	1519763..1520353	+	196	118477078	-	BALH_1379	-	hypothetical protein
1301	 29.26	-1	1520379..1521065	+	228	118477079	-	BALH_1380	-	hypothetical protein
1302	 34.65	0	1521125..1521961	+	278	118477080	-	BALH_1381	-	hypothetical protein
1303	 36.46	0	1521891..1522754	+	287	118477081	-	BALH_1382	-	hypothetical protein
1304	 35.64	0	1522847..1523497	+	216	118477082	-	BALH_1383	-	uracil-DNA glycosylase family protein
1305	 34.47	0	1523526..1524407	-	293	118477083	-	BALH_1384	-	hypothetical protein
1306	 35.09	0	1524619..1525017	+	132	118477084	-	BALH_1385	-	hypothetical protein
1307	 38.58	0	1525017..1525817	+	266	118477085	-	BALH_1386	-	dihydrodipicolinate reductase
1308	 38.89	0	1525832..1526227	+	131	118477086	mgsA	BALH_1387	-	methylglyoxal synthase
1309	 37.50	0	1526224..1526943	+	239	118477087	-	BALH_1388	-	hypothetical protein
1310	 36.91	0	1526940..1528085	+	381	118477088	-	BALH_1389	-	glycosyltransferase, group 1 family protein
1311	 37.32	0	1528063..1529265	+	400	118477089	-	BALH_1390	-	tRNA CCA-pyrophosphorylase
1312	 39.00	0	1529226..1530230	+	334	118477090	-	BALH_1391	-	biotin operon repressor
1313	 41.07	+1	1531127..1531966	+	279	118477091	panB	BALH_1392	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
1314	 37.32	0	1531933..1532811	+	292	118477092	panC	BALH_1393	-	pantoate--beta-alanine ligase
1315	 33.59	0	1532824..1533207	+	127	118477093	-	BALH_1394	-	aspartate alpha-decarboxylase
1316	 35.61	0	1533336..1536140	+	934	118477094	-	BALH_1395	-	bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon
1317	 32.74	0	1536569..1537072	+	167	118477095	-	BALH_1396	-	hypothetical protein
1318	 37.88	0	1537091..1538278	+	395	118477096	aspB	BALH_1397	-	aspartate aminotransferase
1319	 34.59	0	1538394..1539107	+	237	118477097	-	BALH_1398	-	DNA replication protein DnaD
1320	 36.73	0	1539123..1539770	+	215	118477098	-	BALH_1399	-	endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
1321	 29.87	-1	1539774..1540292	+	172	118477099	-	BALH_1400	-	hypothetical protein
1322	 37.94	0	1540316..1543009	-	897	118477100	-	BALH_1401	-	penicillin-binding protein
1323	 32.67	0	1543075..1543677	-	200	118477101	recU	BALH_1402	-	Holliday junction-specific endonuclease
1324	 31.96	-1	1543718..1544806	+	362	118477102	-	BALH_1403	-	hypothetical protein
1325	 29.86	-1	1545593..1545937	+	114	118477103	-	BALH_1404	-	hypothetical protein
1326	 32.29	-1	1545963..1546154	-	63	118477104	-	BALH_1405	-	hypothetical protein
1327	 35.21	0	1546332..1546811	+	159	118477105	-	BALH_1406	-	hypothetical protein
1328	 42.22	+1	1546945..1547394	+	149	118477106	-	BALH_1407	-	spore coat protein D
1329	 32.61	0	1547451..1548005	+	184	118477107	-	BALH_1408	-	hypothetical protein
1330	 32.47	0	1548094..1548441	+	115	118477108	-	BALH_1409	-	cell division protein DivIVA
1331	 38.74	0	1549094..1550239	+	381	118477109	-	BALH_1410	-	methyltransferase
1332	 34.31	0	1550280..1550483	+	67	118477110	-	BALH_1411	-	hypothetical protein
1333	 36.74	0	1550621..1552558	+	645	118477111	-	BALH_1412	-	ATP-dependent helicase DinG
1334	 35.51	0	1552664..1554181	+	505	118477112	-	BALH_1413	-	thermostable carboxypeptidase 1
1335	 33.33	0	1554226..1554567	+	113	118477113	-	BALH_1414	-	ribosomal-protein-alanine acetyltransferase
1336	 34.43	0	1554753..1555664	-	303	118477114	-	BALH_1415	-	macrolide 2-phosphotransferase
1337	 36.95	0	1556184..1556930	+	248	118477115	map	BALH_1416	-	methionine aminopeptidase
1338	 36.27	0	1557169..1557849	+	226	118477116	-	BALH_1417	-	xanthine phosphoribosyltransferase
1339	 38.47	0	1557853..1559175	+	440	118477117	pbuX	BALH_1418	-	xanthine permease
1340	 34.48	0	1559248..1560555	-	435	118477118	-	BALH_1420	-	hypothetical protein
1341	 35.55	0	1560960..1564619	+	1219	118477119	-	BALH_1421	-	GTP1/OBG family GTPase
1342	 34.83	0	1564950..1565417	+	155	118477120	-	BALH_1422	-	acetyltransferase
1343	 35.90	0	1565439..1565711	+	90	118477121	-	BALH_1423	-	hypothetical protein
1344	 38.25	0	1565714..1566547	+	277	118477122	-	BALH_1424	-	thiosulfate sulfurtransferase
1345	 34.00	0	1567104..1567553	-	149	118477123	-	BALH_1425	-	hypothetical protein
1346	 35.67	0	1567952..1569190	+	412	118477124	-	BALH_1426	-	glutathionylspermidine synthase
1347	 34.37	0	1569183..1569569	+	128	118477125	-	BALH_1427	-	hypothetical protein
1348	 34.02	0	1570262..1570987	+	241	118477126	-	BALH_1428	-	cation transporter
1349	 36.53	0	1571079..1571984	+	301	118477127	-	BALH_1429	-	5'-3' exonuclease
1350	 37.72	0	1572383..1587415	-	5010	118477128	-	BALH_1430	-	hypothetical protein
1351	 30.78	-1	1587538..1588398	+	286	118477129	-	BALH_1431	-	acetyltransferase
1352	 34.40	0	1588439..1588999	-	186	118477130	-	BALH_1432	-	isochorismatase
1353	 35.63	0	1589181..1589441	+	86	118477131	-	BALH_1433	-	hypothetical protein
1354	 36.51	0	1589444..1590355	-	303	118477132	-	BALH_1435	-	DMT family permease
1355	 36.69	0	1590363..1590749	-	128	118477133	rnhA	BALH_1436	-	ribonuclease H
1356	 34.94	0	1590819..1591691	-	290	118477134	-	BALH_1437	-	lacX protein
1357	 31.89	-1	1591875..1592360	+	161	118477135	-	BALH_1438	-	hypothetical protein
1358	 34.70	0	1592513..1593172	+	219	118477136	-	BALH_1439	-	hypothetical protein
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.