IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1179	 36.57	0	1399108..1400004	+	298	118476957	ilvE	BALH_1251	-	branched-chain amino acid aminotransferase
1180	 39.70	+1	1400417..1402174	+	585	118476958	alsS	BALH_1252	-	acetolactate synthase catalytic subunit
1181	 37.71	0	1402087..1402680	+	197	118476959	ilvH	BALH_1253	-	acetolactate synthase 3 regulatory subunit
1182	 40.81	+1	1402701..1403717	+	338	118476960	-	BALH_1254	-	ketol-acid reductoisomerase
1183	 38.07	0	1403719..1405239	+	506	118476961	-	BALH_1255	-	2-isopropylmalate synthase
1184	 41.64	+1	1405251..1406381	+	376	118476962	leuB	BALH_1256	-	3-isopropylmalate dehydrogenase
1185	 41.29	+1	1406381..1407775	+	464	118476963	-	BALH_1257	-	isopropylmalate isomerase large subunit
1186	 34.47	0	1407717..1408334	+	205	118476964	leuD	BALH_1258	-	isopropylmalate isomerase small subunit
1187	 35.00	0	1408645..1409907	+	420	118476965	hisZ	BALH_1259	-	ATP phosphoribosyltransferase regulatory subunit
1188	 33.48	0	1409841..1410518	+	225	118476966	hisG	BALH_1260	-	ATP phosphoribosyltransferase catalytic subunit
1189	 38.37	0	1410530..1411819	+	429	118476967	hisD	BALH_1261	-	histidinol dehydrogenase
1190	 38.46	0	1411819..1412403	+	194	118476968	hisB	BALH_1262	-	imidazoleglycerol-phosphate dehydratase
1191	 35.24	0	1412404..1413033	+	209	118476969	hisH	BALH_1263	-	imidazole glycerol phosphate synthase subunit HisH
1192	 38.19	0	1413006..1413725	+	239	118476970	-	BALH_1264	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1193	 40.71	+1	1413719..1414477	+	252	118476971	-	BALH_1265	-	imidazole glycerol phosphate synthase subunit HisF
1194	 34.64	0	1414474..1414779	+	101	118476972	hisI	BALH_1266	-	phosphoribosyl-AMP cyclohydrolase
1195	 32.82	0	1414724..1415113	+	129	118476973	hisE	BALH_1267	-	phosphoribosyl-ATP pyrophosphatase
1196	 34.81	0	1415125..1416141	+	338	118476974	-	BALH_1268	-	histidinol-phosphatase
1197	 31.37	-1	1416072..1416275	-	67	118476975	-	BALH_1269	-	hypothetical protein
1198	 36.20	0	1416600..1417646	+	348	118476976	serA	BALH_1270	-	2-hydroxyacid dehydrogenase family protein
1199	 35.75	0	1417679..1418380	-	233	118476977	-	BALH_1272	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
1200	 33.02	0	1418562..1420448	-	628	118476978	-	BALH_1273	-	sulfatase
1201	 34.00	0	1420649..1421098	+	149	118476979	-	BALH_1274	-	hypothetical protein
1202	 40.30	+1	1421517..1422866	+	449	118476980	-	BALH_1275	-	diaminopimelate decarboxylase
1203	 37.87	0	1423394..1424098	+	234	118476981	-	BALH_1276	-	phosphoadenylylsulfate reductase (thioredoxin)
1204	 38.08	0	1424137..1425273	+	378	118476982	sat	BALH_1277	-	sulfate adenylyltransferase
1205	 36.70	0	1425286..1425879	+	197	118476983	-	BALH_1278	-	adenylylsulfate kinase
1206	 36.91	0	1425891..1427513	+	540	118476984	-	BALH_1279	-	ferredoxin-nitrite reductase
1207	 33.83	0	1427524..1427724	+	66	118476985	-	BALH_1280	-	hypothetical protein
1208	 40.26	+1	1427808..1428587	+	259	118476986	-	BALH_1281	-	uroporphyrin-III C-methyltransferase
1209	 35.54	0	1428574..1429344	+	256	118476987	-	BALH_1282	-	cbiX protein
1210	 35.28	0	1429319..1429936	+	205	118476988	-	BALH_1283	-	precorrin-2 dehydrogenase
1211	 35.39	0	1430355..1431713	+	452	118476989	-	BALH_1285	-	sodium-dependent transporter
1212	 36.54	0	1431975..1433315	-	446	118476990	-	BALH_1286	-	M24/M37 family peptidase
1213	 35.38	0	1433740..1435011	+	423	118476991	gltT	BALH_1288	-	proton/sodium-glutamate symport protein
1214	 32.79	0	1435043..1435597	+	184	118476992	-	BALH_1289	-	hypothetical protein
1215	 36.89	0	1435859..1437235	+	458	118476993	-	BALH_1291	-	Na+/H+ antiporter
1216	 38.66	0	1437463..1437819	+	118	118476994	-	BALH_1292	-	hypothetical protein
1217	 33.88	0	1437795..1438532	+	245	118476995	-	BALH_1293	-	PspA/IM30 family protein
1218	 34.73	0	1438594..1439379	+	261	118476996	-	BALH_1294	-	hypothetical protein
1219	 37.12	0	1439379..1440434	+	351	118476997	-	BALH_1295	-	sensor histidine kinase
1220	 37.60	0	1440431..1441063	+	210	118476998	-	BALH_1296	-	response regulator
1221	 31.32	-1	1441112..1441459	+	115	118476999	-	BALH_1297	-	hypothetical protein
1222	 37.63	0	1441484..1442878	-	464	118477000	brnQ	BALH_1298	-	branched-chain amino acid transport protein
1223	 36.81	0	1443686..1444462	-	258	118477001	-	BALH_1299	-	methyltransferase
1224	 30.75	-1	1444572..1445423	+	283	118477002	-	BALH_1300	-	hypothetical protein
1225	 33.06	0	1445869..1446966	+	365	118477003	-	BALH_1302	-	membrane metalloprotease
1226	 30.91	-1	1446982..1447599	+	205	118477004	-	BALH_1303	-	hypothetical protein
1227	 34.41	0	1447759..1448967	+	402	118477005	-	BALH_1304	-	nitric oxide dioxygenase
1228	 35.09	0	1448998..1449510	-	170	118477006	-	BALH_1305	-	cAMP-dependent protein kinase, regulatory subunit
1229	 37.72	0	1449680..1449907	+	75	118477007	-	BALH_1306	-	hypothetical protein
1230	 36.41	0	1450201..1451046	-	281	118477008	-	BALH_1307	-	hypothetical protein
1231	 37.31	0	1451119..1452123	-	334	118477009	-	BALH_1308	-	phosphate transporter
1232	 33.33	0	1452129..1452749	-	206	118477010	-	BALH_1309	-	hypothetical protein
1233	 35.54	0	1453062..1455104	+	680	118477011	pbp2A	BALH_1310	-	penicillin-binding protein 2A
1234	 31.26	-1	1455223..1455657	-	144	118477012	-	BALH_1311	-	hypothetical protein
1235	 51.50	+2	1455847..1458075	-	742	118477013	-	BALH_1312	-	collagen-like protein
1236	 30.13	-1	1458265..1459545	-	426	118477014	-	BALH_1313	-	sensor histidine kinase
1237	 35.31	0	1459622..1460533	+	303	118477015	-	BALH_1314	-	hypothetical protein
1238	 30.77	-1	1460826..1461020	-	64	118477016	-	BALH_1315	-	hypothetical protein
1239	 32.22	-1	1461140..1461679	-	179	118477017	-	BALH_1316	-	phage integrase family site specific recombinase
1240	 31.68	-1	1461778..1463589	-	603	118477018	-	BALH_1317	-	sensor histidine kinase
1241	 36.86	0	1463746..1464453	-	235	118477019	deoD	BALH_1318	-	purine nucleoside phosphorylase
1242	 32.83	0	1464629..1465417	+	262	118477020	-	BALH_1319	-	hypothetical protein
1243	 35.87	0	1465422..1468067	-	881	118477021	-	BALH_1321	-	hypothetical protein
1244	 27.18	-2	1468195..1468584	+	129	118477022	-	BALH_1322	-	hypothetical protein
1245	 32.72	0	1468606..1469097	+	163	118477023	-	BALH_1323	-	hypothetical protein
1246	 36.90	0	1469164..1470117	+	317	118477024	sodF	BALH_1324	-	superoxide dismutase
1247	 36.69	0	1470193..1471353	+	386	118477025	dacB	BALH_1325	-	D-alanyl-D-alanine carboxypeptidase
1248	 39.41	+1	1471334..1471942	+	202	118477026	-	BALH_1327	-	spore maturation protein A
1249	 36.91	0	1471939..1472469	+	176	118477027	-	BALH_1328	-	spore maturation protein B
1250	 38.82	0	1472759..1473487	+	242	118477028	rluB	BALH_1329	-	ribosomal large subunit pseudouridine synthase B
1251	 33.91	0	1473582..1474103	+	173	118477029	resA	BALH_1330	-	thiol-disulfide oxidoreductase
1252	 34.47	0	1474177..1475850	+	557	118477030	-	BALH_1331	-	cytochrome c biogenesis protein
1253	 37.31	0	1475865..1477022	+	385	118477031	resC	BALH_1332	-	cytochrome c biogenesis protein
1254	 37.58	0	1477289..1478041	+	250	118477032	resD	BALH_1333	-	DNA-binding response regulator
1255	 37.22	0	1478041..1479816	+	591	118477033	resE	BALH_1334	-	sensor histidine kinase
1256	 37.80	0	1479954..1480535	+	193	118477034	-	BALH_1335	-	ATP:cob(I)alamin adenosyltransferase
1257	 35.97	0	1480590..1481234	+	214	118477035	-	BALH_1336	-	cell wall endopeptidase
1258	 32.17	-1	1481265..1481951	-	228	118477036	-	BALH_1337	-	hypothetical protein
1259	 36.14	0	1482472..1483077	+	201	118477037	-	BALH_1338	-	hypothetical protein
1260	 38.49	0	1483201..1483491	-	96	118477038	-	BALH_1339	-	ferredoxin
1261	 32.68	0	1483705..1484778	+	357	118477039	-	BALH_1340	-	hypothetical protein
1262	 35.29	0	1484768..1486297	+	509	118477040	recQ	BALH_1341	-	ATP-dependent DNA helicase RecQ
1263	 34.47	0	1486246..1486860	+	204	118477041	-	BALH_1342	-	CAAX amino terminal protease family protein
1264	 32.73	0	1486868..1487362	+	164	118477042	-	BALH_1343	-	peptidoglycan-binding protein
1265	 32.43	0	1487420..1488196	+	258	118477043	-	BALH_1344	-	phosphoesterase
1266	 34.23	0	1488181..1489071	+	296	118477044	-	BALH_1345	-	MerR family transcriptional regulator
1267	 35.47	0	1489149..1489757	+	202	118477045	-	BALH_1346	-	adaptor protein
1268	 37.68	0	1490025..1491311	+	428	118477046	gdhA	BALH_1347	-	glutamate dehydrogenase (NAD)
1269	 38.81	0	1491381..1491599	+	72	118477047	-	BALH_1348	-	hypothetical protein
1270	 37.59	0	1491999..1492538	+	179	118477048	-	BALH_1349	-	N-acetylmuramoyl-L-alanine amidase
1271	 38.23	0	1492648..1493628	+	326	118477049	trxB	BALH_1350	-	thioredoxin reductase
1272	 36.31	0	1493667..1494641	-	324	118477050	-	BALH_1351	-	asparaginase
1273	 37.17	0	1495123..1495800	+	225	118477051	cmk	BALH_1352	-	cytidylate kinase
1274	 36.29	0	1496134..1497282	+	382	118477052	rpsA	BALH_1353	-	30S ribosomal protein S1
1275	 38.57	0	1497295..1498344	+	349	118477053	-	BALH_1354	-	isopentenyl pyrophosphate isomerase
1276	 41.31	+1	1498661..1498873	-	70	118477054	-	BALH_1355	-	hypothetical protein
1277	 34.43	0	1498888..1499523	+	211	118477055	-	BALH_1356	-	hypothetical protein
1278	 41.16	+1	1499516..1500409	+	297	118477056	-	BALH_1357	-	hypothetical protein
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.