IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1143	 34.89	0	1366783..1367616	+	277	118476921	-	BALH_1213	-	hypothetical protein
1144	 35.81	0	1368163..1369131	+	322	118476922	nrdF	BALH_1214	-	ribonucleotide-diphosphate reductase subunit beta
1145	 35.96	0	1369348..1369728	+	126	118476923	-	BALH_1215	-	GntR family transcriptional regulator
1146	 34.05	0	1369725..1370423	+	232	118476924	-	BALH_1216	-	multidrug ABC transporter, ATP-binding protein
1147	 28.10	-2	1370420..1371202	+	260	118476925	-	BALH_1217	-	ABC transporter, permease
1148	 37.65	0	1371217..1372119	+	300	118476926	bcrA	BALH_1218	-	bacitracin ABC transporter, ATP-binding protein
1149	 30.63	-1	1372119..1372895	+	258	118476927	bcrB	BALH_1219	-	bacitracin ABC transporter, permease component
1150	 34.21	0	1373083..1374111	+	342	118476928	-	BALH_1220	-	AbrB family transcriptional regulator
1151	 32.79	0	1374141..1374323	-	60	118476929	-	BALH_1221	-	hypothetical protein
1152	 32.17	-1	1374424..1374939	-	171	118476930	-	BALH_1222	-	AsnC family transcriptional regulator
1153	 33.54	0	1374940..1375431	+	163	118476931	-	BALH_1223	-	hypothetical protein
1154	 33.51	0	1375421..1375978	+	185	118476932	-	BALH_1224	-	isochorismatase family protein
1155	 37.34	0	1376065..1376463	+	132	118476933	-	BALH_1225	-	enhancer of serine sensitivity, N-terminal region
1156	 38.55	0	1376492..1377412	-	306	118476934	ldcA	BALH_1226	-	muramoyltetrapeptide carboxypeptidase
1157	 40.19	+1	1377486..1378622	+	378	118476935	-	BALH_1227	-	2-nitropropane dioxygenase (nitroalkane oxidase)
1158	 34.78	0	1378640..1379815	-	391	118476936	-	BALH_1228	-	undecaprenol-phosphate-poly(glycerophosphate subunit) D-alanine transfer protein
1159	 30.68	-1	1379812..1380075	-	87	118476937	-	BALH_1229	-	D-alanine--poly(phosphoribitol) ligase subunit 2
1160	 32.39	0	1380121..1381287	-	388	118476938	-	BALH_1230	-	D-alanyl transfer protein
1161	 37.16	0	1381284..1382798	-	504	118476939	dltA	BALH_1231	-	D-alanine--D-alanyl carrier protein ligase
1162	 38.16	0	1383223..1384464	+	413	118476940	-	BALH_1232	-	aminoacylase (N-acyl-L-amino acid amidohydrolase)
1163	 36.31	0	1384803..1385306	+	167	118476941	-	BALH_1233	-	flavodoxin
1164	 34.24	0	1385331..1386104	+	257	118476942	-	BALH_1234	-	hypothetical protein
1165	 33.94	0	1385959..1386285	-	108	118476943	-	BALH_1235	-	hypothetical protein
1166	 33.67	0	1386368..1387270	-	300	118476944	-	BALH_1236	-	aminoglycoside phophotransferase
1167	 30.64	-1	1387354..1387872	+	172	118476945	-	BALH_1237	-	transcriptional regulator
1168	 36.78	0	1388352..1389713	-	453	118476946	-	BALH_1238	-	multidrug efflux protein
1169	 36.94	0	1389856..1390686	+	276	118476947	-	BALH_1240	-	undecaprenyl pyrophosphate phosphatase
1170	 34.69	0	1390716..1391303	-	195	118476948	-	BALH_1241	-	thioredoxin
1171	 33.33	0	1391931..1392350	+	139	118476949	-	BALH_1242	-	MarR family transcriptional regulator
1172	 39.00	0	1392665..1393900	-	411	118476950	gltT	BALH_1243	-	proton/sodium-glutamate symport protein
1173	 33.85	0	1395088..1396437	+	449	118476951	-	BALH_1245	-	potassium/sodium uptake protein
1174	 38.33	0	1396471..1396890	-	139	118476952	-	BALH_1246	-	hypothetical protein
1175	 36.32	0	1397069..1397536	+	155	118476953	-	BALH_1247	-	hypothetical protein
1176	 40.96	+1	1398087..1398335	-	82	118476954	-	BALH_1248	-	hypothetical protein
1177	 33.33	0	1398453..1398710	-	85	118476955	-	BALH_1249	-	hypothetical protein
1178	 26.77	-2	1398752..1398949	+	65	118476956	-	BALH_1250	-	hypothetical protein
1179	 36.57	0	1399108..1400004	+	298	118476957	ilvE	BALH_1251	-	branched-chain amino acid aminotransferase
1180	 39.70	+1	1400417..1402174	+	585	118476958	alsS	BALH_1252	-	acetolactate synthase catalytic subunit
1181	 37.71	0	1402087..1402680	+	197	118476959	ilvH	BALH_1253	-	acetolactate synthase 3 regulatory subunit
1182	 40.81	+1	1402701..1403717	+	338	118476960	-	BALH_1254	-	ketol-acid reductoisomerase
1183	 38.07	0	1403719..1405239	+	506	118476961	-	BALH_1255	-	2-isopropylmalate synthase
1184	 41.64	+1	1405251..1406381	+	376	118476962	leuB	BALH_1256	-	3-isopropylmalate dehydrogenase
1185	 41.29	+1	1406381..1407775	+	464	118476963	-	BALH_1257	-	isopropylmalate isomerase large subunit
1186	 34.47	0	1407717..1408334	+	205	118476964	leuD	BALH_1258	-	isopropylmalate isomerase small subunit
1187	 35.00	0	1408645..1409907	+	420	118476965	hisZ	BALH_1259	-	ATP phosphoribosyltransferase regulatory subunit
1188	 33.48	0	1409841..1410518	+	225	118476966	hisG	BALH_1260	-	ATP phosphoribosyltransferase catalytic subunit
1189	 38.37	0	1410530..1411819	+	429	118476967	hisD	BALH_1261	-	histidinol dehydrogenase
1190	 38.46	0	1411819..1412403	+	194	118476968	hisB	BALH_1262	-	imidazoleglycerol-phosphate dehydratase
1191	 35.24	0	1412404..1413033	+	209	118476969	hisH	BALH_1263	-	imidazole glycerol phosphate synthase subunit HisH
1192	 38.19	0	1413006..1413725	+	239	118476970	-	BALH_1264	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1193	 40.71	+1	1413719..1414477	+	252	118476971	-	BALH_1265	-	imidazole glycerol phosphate synthase subunit HisF
1194	 34.64	0	1414474..1414779	+	101	118476972	hisI	BALH_1266	-	phosphoribosyl-AMP cyclohydrolase
1195	 32.82	0	1414724..1415113	+	129	118476973	hisE	BALH_1267	-	phosphoribosyl-ATP pyrophosphatase
1196	 34.81	0	1415125..1416141	+	338	118476974	-	BALH_1268	-	histidinol-phosphatase
1197	 31.37	-1	1416072..1416275	-	67	118476975	-	BALH_1269	-	hypothetical protein
1198	 36.20	0	1416600..1417646	+	348	118476976	serA	BALH_1270	-	2-hydroxyacid dehydrogenase family protein
1199	 35.75	0	1417679..1418380	-	233	118476977	-	BALH_1272	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
1200	 33.02	0	1418562..1420448	-	628	118476978	-	BALH_1273	-	sulfatase
1201	 34.00	0	1420649..1421098	+	149	118476979	-	BALH_1274	-	hypothetical protein
1202	 40.30	+1	1421517..1422866	+	449	118476980	-	BALH_1275	-	diaminopimelate decarboxylase
1203	 37.87	0	1423394..1424098	+	234	118476981	-	BALH_1276	-	phosphoadenylylsulfate reductase (thioredoxin)
1204	 38.08	0	1424137..1425273	+	378	118476982	sat	BALH_1277	-	sulfate adenylyltransferase
1205	 36.70	0	1425286..1425879	+	197	118476983	-	BALH_1278	-	adenylylsulfate kinase
1206	 36.91	0	1425891..1427513	+	540	118476984	-	BALH_1279	-	ferredoxin-nitrite reductase
1207	 33.83	0	1427524..1427724	+	66	118476985	-	BALH_1280	-	hypothetical protein
1208	 40.26	+1	1427808..1428587	+	259	118476986	-	BALH_1281	-	uroporphyrin-III C-methyltransferase
1209	 35.54	0	1428574..1429344	+	256	118476987	-	BALH_1282	-	cbiX protein
1210	 35.28	0	1429319..1429936	+	205	118476988	-	BALH_1283	-	precorrin-2 dehydrogenase
1211	 35.39	0	1430355..1431713	+	452	118476989	-	BALH_1285	-	sodium-dependent transporter
1212	 36.54	0	1431975..1433315	-	446	118476990	-	BALH_1286	-	M24/M37 family peptidase
1213	 35.38	0	1433740..1435011	+	423	118476991	gltT	BALH_1288	-	proton/sodium-glutamate symport protein
1214	 32.79	0	1435043..1435597	+	184	118476992	-	BALH_1289	-	hypothetical protein
1215	 36.89	0	1435859..1437235	+	458	118476993	-	BALH_1291	-	Na+/H+ antiporter
1216	 38.66	0	1437463..1437819	+	118	118476994	-	BALH_1292	-	hypothetical protein
1217	 33.88	0	1437795..1438532	+	245	118476995	-	BALH_1293	-	PspA/IM30 family protein
1218	 34.73	0	1438594..1439379	+	261	118476996	-	BALH_1294	-	hypothetical protein
1219	 37.12	0	1439379..1440434	+	351	118476997	-	BALH_1295	-	sensor histidine kinase
1220	 37.60	0	1440431..1441063	+	210	118476998	-	BALH_1296	-	response regulator
1221	 31.32	-1	1441112..1441459	+	115	118476999	-	BALH_1297	-	hypothetical protein
1222	 37.63	0	1441484..1442878	-	464	118477000	brnQ	BALH_1298	-	branched-chain amino acid transport protein
1223	 36.81	0	1443686..1444462	-	258	118477001	-	BALH_1299	-	methyltransferase
1224	 30.75	-1	1444572..1445423	+	283	118477002	-	BALH_1300	-	hypothetical protein
1225	 33.06	0	1445869..1446966	+	365	118477003	-	BALH_1302	-	membrane metalloprotease
1226	 30.91	-1	1446982..1447599	+	205	118477004	-	BALH_1303	-	hypothetical protein
1227	 34.41	0	1447759..1448967	+	402	118477005	-	BALH_1304	-	nitric oxide dioxygenase
1228	 35.09	0	1448998..1449510	-	170	118477006	-	BALH_1305	-	cAMP-dependent protein kinase, regulatory subunit
1229	 37.72	0	1449680..1449907	+	75	118477007	-	BALH_1306	-	hypothetical protein
1230	 36.41	0	1450201..1451046	-	281	118477008	-	BALH_1307	-	hypothetical protein
1231	 37.31	0	1451119..1452123	-	334	118477009	-	BALH_1308	-	phosphate transporter
1232	 33.33	0	1452129..1452749	-	206	118477010	-	BALH_1309	-	hypothetical protein
1233	 35.54	0	1453062..1455104	+	680	118477011	pbp2A	BALH_1310	-	penicillin-binding protein 2A
1234	 31.26	-1	1455223..1455657	-	144	118477012	-	BALH_1311	-	hypothetical protein
1235	 51.50	+2	1455847..1458075	-	742	118477013	-	BALH_1312	-	collagen-like protein
1236	 30.13	-1	1458265..1459545	-	426	118477014	-	BALH_1313	-	sensor histidine kinase
1237	 35.31	0	1459622..1460533	+	303	118477015	-	BALH_1314	-	hypothetical protein
1238	 30.77	-1	1460826..1461020	-	64	118477016	-	BALH_1315	-	hypothetical protein
1239	 32.22	-1	1461140..1461679	-	179	118477017	-	BALH_1316	-	phage integrase family site specific recombinase
1240	 31.68	-1	1461778..1463589	-	603	118477018	-	BALH_1317	-	sensor histidine kinase
1241	 36.86	0	1463746..1464453	-	235	118477019	deoD	BALH_1318	-	purine nucleoside phosphorylase
1242	 32.83	0	1464629..1465417	+	262	118477020	-	BALH_1319	-	hypothetical protein
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.